Array 1 1050125-1048718 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB233222.1 Providencia burhodogranariea DSM 19968 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1050124 32 100.0 34 ................................ ATCTAAAGCTATAAACATAAAACCATTTTTGTAA 1050058 32 100.0 33 ................................ TGCGCTGATCCATTTGAGCAAGTTTGATGGCTT 1049993 32 100.0 33 ................................ TGAATCGCACTACTTGATACTTTGTAGTGATTC 1049928 32 100.0 34 ................................ CCTGCATTAGATGCCTCCCGTTGGCTTTTTGCTG 1049862 32 100.0 32 ................................ CAGTACCAAAAGCGTATCAGAAAAAATATGGA 1049798 32 100.0 33 ................................ TTCATAAAGCTAGCTGGTGGCTCAGGATCTACG 1049733 32 100.0 35 ................................ CAGTTTACACCGAATCGTAGTTTAACTCCTAATTC 1049666 32 100.0 34 ................................ ATTTTAAAGCCCTCTCGTTTGGTGTATGCGTATA 1049600 32 100.0 33 ................................ GTAAAAGACGTGTTTCCTAAATTTGCATCAACA 1049535 32 100.0 33 ................................ GCAATACCTCTGACATGTATGATAATGATGTAT 1049470 32 100.0 34 ................................ GAGTTAGCTATCTAATGAAAAGGACTCGTTAATG 1049404 32 100.0 33 ................................ AATCAAAGATGAAGTTATACATGAGTTATTGCC 1049339 32 100.0 33 ................................ TCTCGCCACTCGCTCAGCCTCTTCTTTTGCATG 1049274 32 100.0 33 ................................ GGCTGAAAGTAATACATCTGAAGCTGAAGAGGC 1049209 32 100.0 34 ................................ TAGACTTGCAGTTTCAATGATGGATCATGAAAAG 1049143 32 100.0 34 ................................ TGCGTACATCTATCAAGCCAATGGTACGAGCGCA 1049077 32 100.0 35 ................................ AATTCCATTGAATAACATGCAATATGGCGCGGCAT 1049010 32 100.0 33 ................................ GCTTACTGGGAAAATGCTTGAGCTAATCGGTAT 1048945 32 100.0 34 ................................ TCAGTAAGTATCTAGATAGATTTACTCTCGCTCT 1048879 32 100.0 33 ................................ AAGAAAGATTGGTACAACGCCATTGTGCGTGAT 1048814 32 100.0 33 ................................ TTTTATATTGAGCATCATCATCTCCGCAATCTT 1048749 32 71.9 0 ..................AT..A.G..ACTGG | ========== ====== ====== ====== ================================ =================================== ================== 22 32 98.7 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAC # Left flank : AATTACCCCCCTTTTTATTTGAGAAAGTAATCATGATGATATTAGTTGCTTATGATGTTTCATTCGATTCTGAAGATGGCCCTAAGAGACTCAGGCAATTAGCAAATGTTTGTTTAGATTATGGAGTAAGAGTGCAATACTCTATTTTTGAATGTGAAATCGACCCTACTCAATGGATTAGTTTTAAATCAAGATTATTATCCATATTCGATTCAGAAGTAGATAGCTTACGTTTTTATAAGCTTGGTAAAAATTGGCAAAGTAAAGTGGAACATCACGGAGCAAAAGCAGCAATTGATATTTTTCGTGATCCATTAATATTATAGCGCTAATCTGTTGTTCTCATGATTTTCCCGCTAGGTTAGCGCGTTCTTAACTAATTAAAATATAATACTAAATTTTTTAGCATTTATTATTAGCTATAACATATTCCGTGTTATAAACCGATTAGCGATTTGAGGTAAATATTGCTAAGCTGTATGCGCCTGTACAAGCAGGCA # Right flank : CATAGATTACAGAATGCATGAATTCAGGCTCAGCTTATTTGCTGAGCCTGTTAATTTTACTGATACCCTGAAAAATTAGGCTAAAATTGCAATTGTTGTTGGTAAAGATGATAGTTTTCGTCATCAAAGCAGACAAAAATCACTGTCTTGGGTAGTGCATTATCAGCTAAATAATGCATCACAGTTTCACATGCAACTTGTGCGGCCAACGCTTTTGGAAAATGATAAATGCCAGTACTAATATTAGGAAATGCGATAGTTTCAACTTGATTCTGACTGGCTAACTTTAAACTAGACAAATAGGCTTTCTTTAGTATTTCTGTTTCATTATGAGCACCATCCTGCCAAACAGGCCCCACTGTATGAATCACATATTTTGCAGGCAATTTTCCACCCGTGGTAATAACCGCATCACCCGGATGGCAACCACCCTGCCTTGCTCTAATTTGGCGGCATTCATCAAGAATTGCAGCCCCACCAGATCGGTGGATTGCCCCATC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1897566-1897057 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB233222.1 Providencia burhodogranariea DSM 19968 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1897565 28 96.4 32 ........A................... TCTTGAGCGGTTTTGGCTGCTTAGCAGAAACA 1897505 28 96.4 32 ........A................... TTTTCATCGTGCCTTACACCGTCCGCAACAAA 1897445 28 100.0 32 ............................ TACAACTGGAGCGTAGCTAAGATTGCTGAAGC 1897385 28 100.0 32 ............................ CGTTTTTATTTGTAGCGCACGGGCAGTTAAAA 1897325 28 100.0 33 ............................ TGATCCAGTCGACATAAATGGCGATAAATTTGT 1897264 28 100.0 32 ............................ ATTTGCTGAGGATGGACAAAAAGACGAAATAC 1897204 28 100.0 32 ............................ GCCACAGAATCACTATCATCACTCACTTTCAC 1897144 28 100.0 32 ............................ TTGCCCTCAACCCCCCACGCATCACTAAACTC 1897084 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACGTTTAATGTGCATAATGTCCTATTATTTGAGTGAGGGTAGTGGTGTTCTGCTAATGCTTTATCATTAAGTAAAGTTACTGGTCGCTTGAGTTATCTTGGATATTTGATTGGTTATTTTTTGATATGCGCGCTACTCTTTTTTTACTTAGGATAAAAGAATTCTTTATTTGAAGTTAGGCTATTTTTTGTTATTTGTCGCTTTACTTCTAATACGTTTCGACTGGATGTTAGAAGGTTCTTTAAAAATTTGATGCTGATTAATGATGATATTGATCGCTGAAATTTGTTGTCATTCATTAAAGGTATATTCATATTGATGGCGACAAATTGGTGTGTTTGCTACGAGCGATGTTTTACCTTAATTTTACCCTTTGTTTTTAAAATTAAAATTAAACACTTTTAAAACAATAAGTTAAGATGCTCGATAAAAAAGAAGGTATTTTAAAGGAATTAGGCCTAAATTATTGTTGTCTGGGATTTTTTTCCTGATAATTTATA # Right flank : TCAAATAAAAATAGTGTATTAGCTAAGCAGTAATAATTTATTCCCTGCATAAATATAATCATAATCCAGAGCGTGACATGTCACGTTAAATGATTTGATCATCAAATGATCTTTTAATATAGCCTCGATTGGGGTCGTTAAATAAACAATCCAAACATCAACGATAATTGTTCGAAAGCTTGGTTAATCAGGCGCTCAGTGTAACGGGGTAGGATAGAGATTATCAATCCTAACATACTGATGCCGATGGTTAATGTCAGCGGAAATCCGACGACAAAAACAGATAGCTGAGGGGTCATGCGGTTAAGAATACCGAGTGCGAGGTTGAGGATCAAAAATAAGGTAATAAAAGGCAGAGCAAGCATTAACCCATTAATAAAAATAGAATTTGCAAATTGCACTAATGACCAAAAACCATCACGATTGATGGGAGAAACTTGAATTGGAATGAGATCGAATGAATTAATTAAAATATAAATTAACCACAAATGTCCATCGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGACGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1904779-1904031 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB233222.1 Providencia burhodogranariea DSM 19968 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1904778 28 100.0 32 ............................ CAGCAACATTGCTTTTGCTTCATCCCTGATAC 1904718 28 100.0 32 ............................ GCAGGGTGATCGACTGATAGAGCCGTTTGTGG 1904658 28 100.0 32 ............................ TTATGTGCGTATTCCTCACTATTAATAGCGAT 1904598 28 100.0 32 ............................ ATTTAAAGACGAGCCCGTGGACTGCGTTATAT 1904538 28 100.0 32 ............................ GTGCCGCCGTCTAAATTGTTATCACTCACTGT 1904478 28 100.0 32 ............................ TCATGCAGTGTACCAAACTCAAAACAACAAAA 1904418 28 100.0 32 ............................ AAATTGCAAAGGTGGGTAAATGAACATTAGAG 1904358 28 100.0 32 ............................ GTGATGCCGAGTACAAACGCAAGTATTTTGAG 1904298 28 92.9 32 ...........T.....T.......... GGTCAGCGTTATGCAGATGATCGAGACAAATA 1904238 28 96.4 32 ...........T................ TGATAAGTATTGCTAATTTGCTATAACATGTC 1904178 28 96.4 32 ...........T................ AACAGTTTATTGAAAACCTGCGTGACCAAAGT 1904118 28 100.0 32 ............................ CCTCCAGATTTTCTGAATATTAAGTTTTTCCT 1904058 28 89.3 0 .........T..........T...C... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTCGATTCAATCTGTACCTGAACATACAAGAGCTGTGAGTTATGTCCGCCAACATGTTAAGGGGGAGCGACGAATCGAATCTGATATGCACAAAAAAGCCCAGCTATGGGCGGAGAAGACAGGGCAATCGAAGGACGTTTGTTTAGCGGTATTGAAAAAAAATCGGCCTGAGGCGCATAACCGTCTGCCTTTTTTATGGATGGAAAGTCAGCAAACTAAAGCTCAAAGTGGAGAGGGTGTTCATCGCCCATTTCCTTTATTTATTAAACGGATATCAGCAGAGCAAGCCCAAGTAGGATTATTTAATTGTTATGGGTTAAGCCAAATAACAGGCGGTGAGGCTAACTTGGCAACTGTTCCTCATTTTTAACCTTTATTTTTAGCTCCTTAAAAATAAAATTATAAAACAATAGGTTACAATAAGTGATGAAAAAGAAGGTATTTTGGTAAGAATTACCTTAACTATTTGTTGTAACTTATTTTTTGTTAAATGTGGTCTA # Right flank : GCTACATTCGATGTTTGCAGGGGACGCCAAGAGTACACTGGCTCACAGGCCTTACTGGTAATCAACATTTGATGATTTTGATCATTATTTTGACCGTCTACAGCCCCACAGGCAGGTGCTATTTTCAGTAATATCGTGTTAGTATTTACCTTAATTAGTTGAAATAAAACAAATATTGGTATGATAACCTAAAACACTAAATTATATTTCGGATACACTCTTAGGTTTAATTGAATATGGATAACAAGCATGCCAATAAGTACTATAAATATAAATTCTCCACGTCAAAATACTCGAGAAAATAATACAGGTATTAGCGACAACATAAAGCTGGAATTCTCATCAAATATTGTCGCTATTAAGCCAGTTAACAAAGCTACTAAATTGAGAAAAGTTTCAAATAATTTTTTGGAAAGAATTTTTAATAATTTAAATACTAATGCAATAAATATTCAAAAAGAAATACATACAGTTTGGCTAGGTAATACAAAAATATCCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1917331-1916341 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB233222.1 Providencia burhodogranariea DSM 19968 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1917330 28 100.0 32 ............................ TCTGGATGTGCGAAACCCTCACTTATCGATTG 1917270 28 100.0 32 ............................ TCTTATTAGTTGACGCTCACAGTCAAGGTTAT 1917210 28 100.0 32 ............................ GCTAACGCCACTGGTGCGCAGCAGACAGAGTC 1917150 28 100.0 33 ............................ TGTGTGCACATCGATGCACTTGCGCTTACATCG 1917089 28 100.0 32 ............................ GCATTACGCTCACCATTATTCAAAAAGCAGTA 1917029 28 100.0 32 ............................ GGATAACTCATTGGCAGGACGAGCGGCGGACG 1916969 28 100.0 32 ............................ TGTATCTGAGCAAATATACACACAGCAAGAAT 1916909 28 100.0 32 ............................ ACTTTAAAACCTGAGTCCTTCGGGTCCCATTT 1916849 28 100.0 33 ............................ TCGCCAGTTCTGGCGTGATTATTTCAATTTCCG 1916788 28 100.0 32 ............................ AAGCTCAATCATTTCTTTAGTTGAAAAAAATA 1916728 28 100.0 32 ............................ ATCAGCAAAAGACGCCCCCTGTAAAAAATCAT 1916668 28 100.0 32 ............................ ATCCCAATCGCCTTTCACGTAACCAACATAAT 1916608 28 100.0 32 ............................ TGCACCAGTAGCCCCCAATATGAGCGCGTGAC 1916548 28 100.0 32 ............................ TCGAACATCAATAATGCCGTCGGAGGGGTAGA 1916488 28 100.0 32 ............................ CGAAATGAAATTACTCGAACTGTCTATACAAA 1916428 28 100.0 32 ............................ AAAATAAACGGGGCAAGTTCTATCATGCGCGG 1916368 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : ACAAACTGGATTGGCGCGACAACGGATTATTATAAAGAGAAGGCGATGTTCCAAGCATCGCAAGATATTTTCAAAGATCTCAATAGTATGTCGCTATTTGGTGGACGGTAAGTTTTCACCCGCTAACTTAGCGAGATCATTCGAGATGTTTATAGCGAGTCAGTGATACCACCTTGATAAGAAAACCCGATGAACAGAGATAAACACTGTGATTCGGGTTGTTATTCGAGGTAATTACCCGTGCTATATTCCTGTATTTTCCTGCATACTGAAGTGCCAAAATGAACATTTTAAATTAATTATGTTTCTTCTCTCTTTTGTTTTTCTTGTTGAGTTGCATTTTCCCACCGGTGTTTTAACCTTATTTTACCCTTCTATTTTTGCTCTTTAAAAATTTACCATAAAAACAATAGATTAGAGATGCCGCGAAAAAACAAGGTATTTTTATAAAAATCATCGTAATTTATTGTTGTGTTAAGCGTTTTATTTGATAATTTATA # Right flank : AATGAAGAGTTATTTAGCTTACGAGCGAACAATAACTAGTTTCCATCAGCAATAATAATTCGTCTCACTCCCATTATCTATACAAAATAACCCCTTATTTGGGGTTTATTTGTATAGATATTAAGTCTATTATATATCTGTACAAAACCACCCCACAGAAAGGGTGATTTAGTGGAGATAATATAATGGATCAAATTACAGCTATTCACACACTGGATGACTTTAGTAAAAAGGGAAAAAATATTTTCTTGACCCAAGATTTGGCGACCATTTTCCCTAATGAATCTCCGAAAACATTACAAAAATCAGTTGATCGCTTAGTTGCTGCGGGTATTTTGAAGCGAGCAGCGAAAGGAGTTTATGTCAATGCCAGAGCTTCGTTAGGTGTATATCCATTGGATAGCCTTGCGGTTAATATTCGACGGGGTGAATACAACTACATCAGCTTAGAATCAGCTTTATCTCAGTATGGAGTGATTTCACAGATACTCATCGATAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //