Array 1 136371-136536 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 136371 33 100.0 32 ................................. TCGGAGCTATACCGACATGGTTAAAGCGGTCA 136436 33 97.0 35 ................................A TACTGGAGGTCACCTGCTTCGTCAAGGATGATCAG 136504 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 97.0 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACT # Left flank : TAAGCGCCTCCGCCAAGTAGCCCGCATCTGCAAGAATTACGGGCAACGTGTCCAAGCCTCGGTCTTCGAATGCCTCGTCGATCCAGCACAGCTCGTAAACCTTCGTCATGAACTCCTCTCCGTGATCGATGATCAAGAGGATAGTCTTCGGATCTACCAGCTAGACAAGCACTACCAACGGCAGATCCACGTCTACGGCAAGGTCACCTCCTTCGAGATCGAAGGGGAGCTAATCGTGTAGCCCAACCTCAGCAAGCCCTACCTAAGCATTCCAGCGACCTCCCCAAAAGCACCTTCTCAGTAAGTTCCCGAGCGCATCCACACAAGCCTCCAGCGAACCCCAAGCGAACAGCTATTCCCTGCACCATCCGCAGGTGCTAGTTATCAAGCACATAGACAAGACCAAAGCAATAAGCGTAGCCCCGACCTTCAGAGCAACACCTCCAGTCGCAGATTACGCTTGTTTATCCGCCCCATAATACGCAACTTTGCACCATACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGAATGTACAGGCGGTACGTAATATCATCGATCGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCCTGACTAAGTTGCAGGAGAAGATCCAGCAATGGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTCAGAGTCGCTCTAAGCAAAGATAAGGGGGAGGCAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTATAAGTGAGTGAAGCATAGTAGCACTCATTATAGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 136634-136933 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 136634 33 93.9 33 N...............................A GAATGTACAGGCGGTACGTAATATCATCGATCG 136700 33 100.0 33 ................................. CTGACTAAGTTGCAGGAGAAGATCCAGCAATGG 136766 33 100.0 36 ................................. TCAGAGTCGCTCTAAGCAAAGATAAGGGGGAGGCAA 136835 33 97.0 33 ................................T ATAAGTGAGTGAAGCATAGTAGCACTCATTATA 136901 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 97.0 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACC # Left flank : TAAGCATTCCAGCGACCTCCCCAAAAGCACCTTCTCAGTAAGTTCCCGAGCGCATCCACACAAGCCTCCAGCGAACCCCAAGCGAACAGCTATTCCCTGCACCATCCGCAGGTGCTAGTTATCAAGCACATAGACAAGACCAAAGCAATAAGCGTAGCCCCGACCTTCAGAGCAACACCTCCAGTCGCAGATTACGCTTGTTTATCCGCCCCATAATACGCAACTTTGCACCATACTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTTCGGAGCTATACCGACATGGTTAAAGCGGTCAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACATACTGGAGGTCACCTGCTTCGTCAAGGATGATCAGGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACATTAGACACAGTAGCACCAACAGCTGGTGCAGGTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTCGTAATATCTCCGGTATCGAGAGCCTTGAATACGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGGAGGGCGAATAGACAGGTAACCCATTATTACTATGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACTGGGAGCGAGGGTAAGAAGTCGAGATCTTTAAGGAGTCGCA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 137031-137262 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 137031 33 93.9 33 N...............................A TTAGACACAGTAGCACCAACAGCTGGTGCAGGT 137097 33 97.0 33 ................................T CGTAATATCTCCGGTATCGAGAGCCTTGAATAC 137163 33 100.0 34 ................................. GAGGGCGAATAGACAGGTAACCCATTATTACTAT 137230 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACG # Left flank : GAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGAATGTACAGGCGGTACGTAATATCATCGATCGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCCTGACTAAGTTGCAGGAGAAGATCCAGCAATGGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTCAGAGTCGCTCTAAGCAAAGATAAGGGGGAGGCAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTATAAGTGAGTGAAGCATAGTAGCACTCATTATAGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACTGGGAGCGAGGGTAAGAAGTCGAGATCTTTAAGGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTGTTTATCAGTACAATGGACGAGCCCGCAGATGGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGAGCCTGTGCCAAATTGTCGGGATGGTCATTGCACCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTACTGAAGGGCAAGATCTGAGTCTCCAGATAAGGGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTGGACCTGCTCCTGTAACTTAGTAAGCGAAGTGTTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 137360-137733 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 137360 33 93.9 34 N...............................T GGGAGCGAGGGTAAGAAGTCGAGATCTTTAAGGA 137427 33 100.0 35 ................................. TGTTTATCAGTACAATGGACGAGCCCGCAGATGGC 137495 33 97.0 36 ................................A GAGCCTGTGCCAAATTGTCGGGATGGTCATTGCACC 137564 33 97.0 35 ................................T ACTGAAGGGCAAGATCTGAGTCTCCAGATAAGGGA 137632 33 100.0 36 ................................. TGGACCTGCTCCTGTAACTTAGTAAGCGAAGTGTTA 137701 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 97.0 35 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACC # Left flank : TTGAAACTATAAGTGAGTGAAGCATAGTAGCACTCATTATAGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACATTAGACACAGTAGCACCAACAGCTGGTGCAGGTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTCGTAATATCTCCGGTATCGAGAGCCTTGAATACGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGGAGGGCGAATAGACAGGTAACCCATTATTACTATGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACCAAGCTCAAAAAAGGACTCTCCTTTGATGATTATGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTTGCCCCACTCAGACACTCTTGGTACTGCAGATCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTTTAGGACGGCTAAGGAGGTCGTCAGAAGTGAAGTGTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTGCTTACTCCACATTTCGCGAGTAAAATCATTTTGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACATCTAAACGGGCTGCCCCTGCTTTTGGCTTTCGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTCCACCTCTCCTCGGAGGATAGACTTATAGGCAGTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACC # Alternate repeat : CGTCGCACCCCTCCCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 137897-138331 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 137897 33 100.0 33 ................................. TGCCCCACTCAGACACTCTTGGTACTGCAGATC 137963 33 100.0 36 ................................. TTAGGACGGCTAAGGAGGTCGTCAGAAGTGAAGTGT 138032 33 100.0 34 ................................. GCTTACTCCACATTTCGCGAGTAAAATCATTTTG 138099 33 97.0 32 ................................A TCTAAACGGGCTGCCCCTGCTTTTGGCTTTCG 138164 33 100.0 32 ................................. CCACCTCTCCTCGGAGGATAGACTTATAGGCA 138229 33 97.0 37 ................................G ACGTACTGACGACAAAACAAAAAGGCGACCGCCTGCA 138299 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ===================================== ================== 7 33 98.7 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACT # Left flank : GCGAGGGTAAGAAGTCGAGATCTTTAAGGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTGTTTATCAGTACAATGGACGAGCCCGCAGATGGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGAGCCTGTGCCAAATTGTCGGGATGGTCATTGCACCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTACTGAAGGGCAAGATCTGAGTCTCCAGATAAGGGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCTGGACCTGCTCCTGTAACTTAGTAAGCGAAGTGTTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACCAAGCTCAAAAAAGGACTCTCCTTTGATGATTAT # Right flank : AACCCCTGCAACCTTAGAGCGCTTTGTAAGGCCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGGTGCGTGAATTGAAACATTTCTCACAAGCTCCTACTATCGGTTTGCTCCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCGGCTATGAGTTAGATGAGATACCCGATATTGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAAACAGGCTATGACTAATACCAATGGCTCCGCTAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGATGTGCAGATGTCGGGCAATGATGCCCACGATAGTCGCACCCCTCCCGGGTGCGTGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 138551-138782 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 138551 33 97.0 32 ................................C GGCTATGAGTTAGATGAGATACCCGATATTGA 138616 33 100.0 34 ................................. AACAGGCTATGACTAATACCAATGGCTCCGCTAA 138683 33 100.0 34 ................................. GATGTGCAGATGTCGGGCAATGATGCCCACGATA 138750 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Left flank : CGTGAATTGAAACTGCTTACTCCACATTTCGCGAGTAAAATCATTTTGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACATCTAAACGGGCTGCCCCTGCTTTTGGCTTTCGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTCCACCTCTCCTCGGAGGATAGACTTATAGGCAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGACGTACTGACGACAAAACAAAAAGGCGACCGCCTGCAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAACCCCTGCAACCTTAGAGCGCTTTGTAAGGCCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGGTGCGTGAATTGAAACATTTCTCACAAGCTCCTACTATCGGTTTGCTCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCCCGGGTGCGTGAATTGAAACACGCTCTCTGCACTCGCTACGACAATAGCCCTTTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAAAGTATCGGTAAGCGTAGCCATACACGTAAACGTCGCACCCCTCCCGGGTGCGTGAATTGAAACACTACCCTCAAGGGGACGAGAGTGTACCAACCCTGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGCGCATTTATGCTACCCAGATGTTCAAAAGTACCTGTCGCA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 138880-139044 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 138880 33 100.0 34 ................................. CGCTCTCTGCACTCGCTACGACAATAGCCCTTTA 138947 33 100.0 32 ................................. AAGTATCGGTAAGCGTAGCCATACACGTAAAC 139012 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Left flank : GTGCGTGAATTGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGGTGCGTGAATTGAAACATTTCTCACAAGCTCCTACTATCGGTTTGCTCCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCGGCTATGAGTTAGATGAGATACCCGATATTGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAAACAGGCTATGACTAATACCAATGGCTCCGCTAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGATGTGCAGATGTCGGGCAATGATGCCCACGATAGTCGCACCCCTCCCGGGTGCGTGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTACCCTCAAGGGGACGAGAGTGTACCAACCCTGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGCGCATTTATGCTACCCAGATGTTCAAAAGTACCTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTCGTGCTGGCTCTTATGGTCTTAAAGGCGGTGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTTAGCTCGCTTAGCCTGCGAATAGAGCAGTCCAGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCCCCTAACGGCCACGCCACGCGAACACCTCGAGAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGAACGAAGCAGAAGATCCAGTCGAGCCTCGCGCGCGTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 139209-139840 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 139209 33 100.0 34 ................................. CGCATTTATGCTACCCAGATGTTCAAAAGTACCT 139276 33 97.0 32 ................................T CGTGCTGGCTCTTATGGTCTTAAAGGCGGTGC 139341 33 97.0 33 ................................T TAGCTCGCTTAGCCTGCGAATAGAGCAGTCCAG 139407 33 97.0 33 ................................C CCCTAACGGCCACGCCACGCGAACACCTCGAGA 139473 33 100.0 34 ................................. AACGAAGCAGAAGATCCAGTCGAGCCTCGCGCGC 139540 33 97.0 36 ................................C GTGGAGAGTGTGAAGTCCACGACATGCTTTATGAAA 139609 33 97.0 34 ................................T TCCACCCGTAGAACTGAGCGGGTTTAACGATCAA 139676 33 100.0 33 ................................. TTGCTCGCGTCGTGTGGCGTCTGTGGCAACGCA 139742 33 100.0 33 ................................. TAGCGCCATCACCTCGTCGCGCGTCTCGGCGTA 139808 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.5 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACG # Left flank : TGAAACAGATGTGCAGATGTCGGGCAATGATGCCCACGATAGTCGCACCCCTCCCGGGTGCGTGAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCCCGGGTGCGTGAATTGAAACACGCTCTCTGCACTCGCTACGACAATAGCCCTTTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACAAAGTATCGGTAAGCGTAGCCATACACGTAAACGTCGCACCCCTCCCGGGTGCGTGAATTGAAACACTACCCTCAAGGGGACGAGAGTGTACCAACCCTGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTCATTCAAGACAAAACGAGGAGGTACAAGAGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGATAAAAGACAGCATCGACACAAGCACCGCAGGGGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTGTAGCTCACTCCACACTCTACAAGCAAGCTCTCCTGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCAACAAGGCGCGACTGCACTCTGTCGCCGTAGTCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACATGTCTGTATCTGTTTAGTTGAGTTGATTTGCGTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACACAGCAGGGGCGGTGCGCCTCGAGGACGTATTCGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 140005-140371 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ960466.1 Porphyromonas somerae strain KA00683 Scaffold927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 140005 33 97.0 33 ................................G ATAAAAGACAGCATCGACACAAGCACCGCAGGG 140071 33 97.0 35 ................................T GTAGCTCACTCCACACTCTACAAGCAAGCTCTCCT 140139 33 97.0 33 ................................C AACAAGGCGCGACTGCACTCTGTCGCCGTAGTC 140205 33 100.0 34 ................................. TGTCTGTATCTGTTTAGTTGAGTTGATTTGCGTA 140272 33 100.0 34 ................................. CAGCAGGGGCGGTGCGCCTCGAGGACGTATTCGG 140339 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 98.5 34 GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Left flank : GAACGAAGCAGAAGATCCAGTCGAGCCTCGCGCGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAACCGTGGAGAGTGTGAAGTCCACGACATGCTTTATGAAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACTTCCACCCGTAGAACTGAGCGGGTTTAACGATCAAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGTTGCTCGCGTCGTGTGGCGTCTGTGGCAACGCAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGTAGCGCCATCACCTCGTCGCGCGTCTCGGCGTAGTCGCACCCCTCCCGGGTGCGTGAATTGAAACGGTCATTCAAGACAAAACGAGGAGGTACAAGAGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AATGTTTGACTTGAACGCAAAGGAAGCAGACGGCGTCGCACCCCTCCCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCACCCCTCCCGGGTGCGTGAATTGAAACAGCCATAGAGGTATAAATACATCCATGTGGGTACTGTCGCACCCCTCTCGGGGTGCGTGAATTAAATCATTGACGTTATCCCTCAGACCTTTTTCGATATGCCTCTAATCACACGTCTATGTTCCAAGGCCATAGGAGTTATTCTCTTAAAGCTTTCCCAAGATAATATCACAACAAGCTTTATTGCTCCTCGACTAAAGGATTAAGGACTAGACTTGTTGATAAGCACTTCTGCTCAACCTACCCATAGGTGAATCGGTAACCTATCATAGATAGGAGATGATAGAAAAAAGCAATAAAAGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGTGCGTGAATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //