Array 1 520377-520737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016607.1 Mannheimia varigena strain F222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 520377 33 97.0 32 .A............................... ACAGAAAGTCGGGATTGGTCGCACGTTATGCG 520442 33 93.9 30 A...............................T AGTTTTTCTAATTTATAAAATTGTTCCGGC 520505 33 93.9 35 .T..............................T AGTCCTTTTCCTAAGTCGTGGCACAGGGCAGAGAA 520573 33 100.0 32 ................................. ATCGAGAGTACGAAAGGCGGGTAGAAGAGAGC 520638 33 90.9 34 ..A.............G..T............. ACCCTTTTTTCTCTATCTGTTAAAGACATAAAAA 520705 33 78.8 0 ....T.....T.A.......A.A........TC | ========== ====== ====== ====== ================================= =================================== ================== 6 33 92.4 33 GCGGCTACCTCCGCGTAGCCGTGAGTTGAAACA # Left flank : GGAGCAAGGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGACCCCGAAGGGCAGAAACGTCTTCGCCACATTGCCAAACATTGCCTCGACTACGGCGTGCGAGCCCAATATTCCGTATTCGAATGCGATGTCACCCCCGACCAGTGGGTTAAACTTAAACAAAAACTGCTGGCGACTTATAACCCTGAGCTTGACAGCCTCCGCTTTTATCATCTCGGTAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACGCTGATTTTGTAATATTTAGTACATCGCTAACCTGTTGTTCTCACCAAAACAGGGGGAGGTTAGCGATCATCAAAGTTCTTTAATAATCAATAAGTTATAAAAAGTATTGGCTCAATTTGAATTGTGCTATACTAAAAATACTTCCTATACAGGCGTTTAGCGAAAAGGCGGTAACAAAGCCTTGCAGCACAATGCTTTTCATATAGG # Right flank : CTTGGCATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTTATATTATTGAACCGTTGCTTTAGCACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCTATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTTTCTACGGCGTGAATACTTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCAAGGTCTTTTTCATTCTCTTTTGGAATAATAACTGTGGTAATGCCACCACGGTGGGCCGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATCGCTACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAATTAAAGCCGTACACATTGCGATACCCGCACTAGGGCCATCTTTCGGCGTTGCACCGTCTGGAACGTGG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCTACCTCCGCGTAGCCGTGAGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGGCTACCTACGCGTAGCCGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 687397-687692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016607.1 Mannheimia varigena strain F222 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 687397 32 100.0 34 ................................ AATGCACTTGCAGAACCTACAAACACAAGCACAG 687463 32 100.0 34 ................................ TTAGCGAACGTTGAAATTTCTAAATCGCTTGGTC 687529 32 100.0 33 ................................ ACGCAATATACAGGCAGTTTTTACGCCTACCGG 687594 32 100.0 35 ................................ ATTTTTTGTCCCTATTTATAAGCAAAATAGCAGTA 687661 32 87.5 0 ......................A.C..A...T | ========== ====== ====== ====== ================================ =================================== ================== 5 32 97.5 34 GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Left flank : CTCGCAAAGGCTTAACCATTCAACGTTATAAAGGATTAGGCGAGATGAACCCAGAGCAATTATGGGAAACCACAATGGATCCGGTCGCTCGCAAAATGTTGCAAGTAAACATTACCGATGCTATCGCCGCCGACAAACTTTTCAGCACCTTAATGGGCGATGAAGTTGAACCACGCCGTGATTTCATTGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTGAGATCCTCTATTGAGAAATAGAGGATTTTTTATGAAAATTACCTAAGTATCCTACAAACACTATTGTAATATATGAGTTCGCTAACCTATAGTTCTCATTAAAATTGTAGTAGGTTAGCGATTTTACTTATTTTTTTATAATCAATATGTTATAAATTTCACCTTAAATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGTACTAATAGGCCTTGTAGCACAATGATTTCTTATATAGGGA # Right flank : TTTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGTTACACTTCATTGAAATGAATCACTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACCCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTGGATATTGGTTTAGAAAAAGCGGCTTTTTTGCACGCCTCCGATATTGTTTCTCATACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCAAGACTAACTACTGATATCACCTTGCCTTCTCGTTATTTGGTTTTTATGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //