Array 1 44513-43264 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOW01000039.1 Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15 strain BCW_1534 NODE_39_length_47013_cov_0.139404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44512 29 100.0 32 ............................. GCAGTTCGATAAAGTAGGTCGGCTCCGGATTG 44451 29 100.0 32 ............................. GCCTGTTGCTGACCAGTAACCCGCTACTCCCG 44390 29 100.0 32 ............................. GAACACAATCGGCCAGTGAAAGTAACACATGT 44329 29 100.0 32 ............................. CACCAGTAGAGCAAATCGCTGTTGCGGCCAAC 44268 29 100.0 32 ............................. AATCCAGTCAAACATAACCATATCCTTATCAA 44207 29 100.0 32 ............................. CAGATTAACCCTGTGGTCACAACACCCCTGAT 44146 29 100.0 32 ............................. ACACGCTGGCGGCTAACTTCAACAGGCTGACC 44085 29 100.0 32 ............................. GTGACATTTGTTACCGACACGGAAGAACAGGA 44024 29 100.0 32 ............................. GATTTCCGCGACGTGCTGCCGACGCGTCTGGA 43963 29 100.0 32 ............................. AGTGACGTTATCCAGCAGTACAAACGCTGGGG 43902 29 100.0 32 ............................. CCGGATGAATCGTGGATGAGCGCACAACAGGA 43841 29 100.0 32 ............................. AACACATTGGCGTAAAAGACGACGTCACAAAC 43780 29 100.0 32 ............................. GGGCTATTTGGAGGGGGCGGCGACGCCTCCAG 43719 29 100.0 32 ............................. GCTGGAGTGCAGCGTCAGCAGAACAGCGGAAA 43658 29 100.0 32 ............................. ACTACCCGGAGCAATGACCCGCAGTACTGCGA 43597 29 100.0 32 ............................. GCGACTATCGATTTAACAGGTAGATCGTCAAG 43536 29 100.0 32 ............................. AGGGTACACCGTTCCGTTACAGCTTCAGTGCG 43475 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 43414 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 43353 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 43292 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //