Array 1 340722-341847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIV01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_26 contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340722 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340783 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340844 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340905 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340966 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 341027 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 341088 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 341149 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 341210 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 341271 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 341332 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 341393 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 341454 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 341515 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 341576 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 341637 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 341698 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 341759 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 341820 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 358471-361002 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIV01000002.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_26 contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 358471 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 358532 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 358593 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 358654 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 358715 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 358776 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 358837 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 358898 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 358959 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 359020 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 359081 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 359142 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 359203 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 359264 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 359325 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 359386 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 359447 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 359508 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 359569 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 359630 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 359691 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 359752 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 359813 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 359874 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 359935 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 359996 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 360057 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 360118 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 360179 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 360240 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 360301 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 360362 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 360423 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 360484 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 360545 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 360606 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 360667 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 360728 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 360789 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 360850 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 360912 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 360973 29 96.6 0 ............T................ | A [361000] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //