Array 1 289707-292369 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSV01000001.1 Pasteurella multocida subsp. septica strain NCTC11995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 289707 28 100.0 33 ............................ AGCTATTCGAATTGTGGCGGGGAAAGTCAGTCC 289768 28 100.0 32 ............................ ATTGGAGCGCATACATAGCTGTTGTATTAGCA 289828 28 100.0 32 ............................ AGAAATCAACGAATTTTACTAATCGCGAAACT 289888 28 100.0 32 ............................ TTATTCTAAAAATTGGCGTATTTCTGGTGAGT 289948 28 100.0 32 ............................ ATCTACATTCTCAAACACTGGATGGTCAGTAT 290008 28 100.0 32 ............................ AAATCTATTTTGGGCTTTTTCAAACGCGCATA 290068 28 100.0 32 ............................ GTGCTTTATTTTAGTTATGGAATGCTTTATGA 290128 28 100.0 32 ............................ TATTCTAAAGAAAAATATAAGTCTATTAATTT 290188 28 100.0 32 ............................ TCTACGCTTAAAACATAATCAGACATACTAAA 290248 28 100.0 32 ............................ GATGAACGGCATTGTTCGCACGCTGACTTTGT 290308 28 100.0 32 ............................ TTTCTCATTTTTGCTGTTGGCGTAGCAAGCTG 290368 28 100.0 32 ............................ TACAAATCGCATAACATTGTTAAATGGCTGTG 290428 28 100.0 32 ............................ TTGCGGCAAATTCTTCCCGTTTGCCCAGTCAT 290488 28 100.0 32 ............................ ACATACCAACTATCTCGAAACACTCCTCTACA 290548 28 100.0 32 ............................ CCGATTGGTACACGTATTCAGCGCAGAGATTA 290608 28 100.0 32 ............................ GCACAACAAGCAAGTGCGGCAGAAGATGAGCA 290668 28 100.0 32 ............................ CGAACAATCTGCTGGCGAGTTCTCGATGCTCA 290728 28 100.0 32 ............................ TTCTTCACCACCACTATCCACCGCCATTGCTA 290788 28 100.0 32 ............................ GTCTAAAGTCATTACAAATGGAGCTGTTAAAA 290848 28 100.0 32 ............................ ATCTCAATCAAAGCATCAATATGGTTTCTTGC 290908 28 100.0 32 ............................ ATCTCAATCAAAGCATCAATATGGTTTCTTGC 290968 28 100.0 32 ............................ TGCACTGTCCGCCAAATTCACAAGCCTAGTCT 291028 28 100.0 32 ............................ ACCAGCCATCTTGATAACTTGAATACGCAATC 291088 28 96.4 25 ........................A... ATAGCCAAGGCATTTCACCTTGGCT Deletion [291141] 291141 28 100.0 32 ............................ AGTAAGCCCAAGAACGTTGGGTAACTCCACCA 291201 28 100.0 32 ............................ TTGCGGTTGTGTTTGAAACCATTCTTTCAATT 291261 28 100.0 32 ............................ TACCAGTGATCTAGAAGTGATTGGTTATTCCC 291321 28 100.0 32 ............................ TTTATTTTTTAAGGGTAAACACTAATAATTTC 291381 28 100.0 32 ............................ GGAAGAAATCAAAAAAGGCGATCGCATTGCAC 291441 28 100.0 33 ............................ CGTAGTTGCAGGAGCTCATCGTCGGGAAATCAT 291502 28 100.0 32 ............................ TGTTGTGGCGATTTCTCTATTTACTTCAGGTT 291562 28 100.0 32 ............................ TTTCTTACTTCTCTTTTTTATTAAAATCATCA 291622 28 100.0 32 ............................ ACCATGGGAACGCTACATTTACCCAACAGAAC 291682 28 100.0 32 ............................ TCTAAGTAAGCACCTTCCCAAATCCAGCGATA 291742 28 100.0 32 ............................ TAAGCGTAAACAAATGCGTTGATAAAGCCCAT 291802 28 100.0 32 ............................ ATTCGGCAACGTGATCCGCGCTTGAAGGTTTA 291862 28 100.0 32 ............................ GCTAAGAATGTTTTAGTTTCTGTGTCGTCGCC 291922 28 100.0 32 ............................ TTCAAGGGTTGCATCGCACAGCAGAAAGTTTA 291982 28 100.0 32 ............................ GACTACAACGCCGAACATATCGCCAAGAGGTT 292042 28 100.0 32 ............................ GCGAATCACTCCACCCTCAAACGTGTTACCTT 292102 28 100.0 33 ............................ CAATGCTCCTAGAGTTGATGTTAAAACTAAAAT 292163 28 100.0 32 ............................ TTTATATAATGCTAAGTAGATTTTAGTGCCTA 292223 28 100.0 32 ............................ AAAAATACTGGGCGTTACCATTGAGTGCCGTA 292283 28 100.0 32 ............................ ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 292343 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================= ================== 45 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTAGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGTCACAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTGTTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGTGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 745929-746250 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSV01000001.1 Pasteurella multocida subsp. septica strain NCTC11995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 745929 37 100.0 33 ..................................... TCAATTTTTGTGCTATGCGAGATATTAGTAATA 745999 37 100.0 35 ..................................... TGCGTCTAACACTTCTTGTTGTGCGATTTCCACGT 746071 37 100.0 35 ..................................... AACGGTACAACTCAGCGTTGAAGAAGGCTCGCACC 746143 37 97.3 34 ....................................T TAATCAATTTAGATACAATTTTTTCTTCCTTTCT 746214 37 75.7 0 ...........T.A........C...A.A...T.TTT | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 94.6 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : TATGTAGCGTGGGCATACTTGTCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCCTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1515473-1514662 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSV01000001.1 Pasteurella multocida subsp. septica strain NCTC11995, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1515472 28 100.0 32 ............................ ATGCTTTACCTAGCACTTTATGCGAACCTTTA 1515412 28 100.0 32 ............................ ACAGAAGAAGATGCATTAGAAGAATATTATTG 1515352 28 100.0 33 ............................ CGCCAGGCGTTTCATTGGGTCGTCTTCTTCTTT 1515291 28 100.0 32 ............................ ATATATCACCTCTAATTAGTTAATTAACATTT 1515231 28 100.0 32 ............................ AATTTTTTGTTGCGTTAGAAATTGAGCGTCAA 1515171 28 100.0 32 ............................ TGCAATTGCAATTCTAGCTTGTCCATTTTCTG 1515111 28 100.0 32 ............................ TTCACACTCTTTACATTTCGGCATAGGCACAA 1515051 28 100.0 33 ............................ AGTGATTTGCGGGCGTGAGGTGTATGTTTGTTC 1514990 28 100.0 33 ............................ TTTTGGTGAAAACTTAAATCATCACAAAACTGG 1514929 28 100.0 32 ............................ TTGTAACTGATGTCACTGTGAAAAGTGGTGAT 1514869 28 100.0 32 ............................ TTTTTAGCGTTTTTTTGAAGGGTTAGTGAGCG 1514809 28 100.0 32 ............................ TTTTTCTTATAAGGAATCGGCACTATAGGTAA 1514749 28 100.0 32 ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 1514689 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCATTGCCATGTAAGCAGTTTCAATTGACTATTGGTATATTACCTAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCTGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTGTCGGCACGCTGTTTCTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCTTGTACGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //