Array 1 8728-9305 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGI01000008.1 Escherichia coli strain BE2925 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8728 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8789 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8850 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 8911 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 8972 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 9033 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 9094 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 9155 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 9216 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 9277 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94692-96367 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGI01000010.1 Escherichia coli strain BE2925 sequence10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94692 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 94753 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 94814 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 94875 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 94936 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 94997 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 95058 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 95119 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 95180 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 95241 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 95302 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 95363 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 95424 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 95485 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 95546 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 95607 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 95668 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 95729 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 95790 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 95851 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 95912 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 95973 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 96034 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 96095 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 96156 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 96217 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 96278 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 96339 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //