Array 1 112371-116362 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSF01000002.1 Bifidobacterium dentium strain BRDF 5 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 112371 36 100.0 34 .................................... TCGTCCTCTTCGGCCGACGTGTAGGGGATGGCGA 112441 36 100.0 36 .................................... GCGTTGTACCGGTCGCTCATGTTGGCCCGCTGGCTG 112513 36 100.0 34 .................................... CTCGCCATCGGCCAGGCATTCGTCAGCGGATTGC 112583 36 100.0 39 .................................... AAGGGCATCAGCCCCTACGTCGAAGCGCTGTACGACGCG 112658 36 100.0 35 .................................... TACATCACTCACCATCCTCTCGATCGGGGTTCAGG 112729 36 100.0 34 .................................... TTGCATGAGACGGACAACCACGGTTCCTCGACAA 112799 36 100.0 35 .................................... GGCGCAAATCAATACGATAGGCTCCGGCGTGGCGA 112870 36 100.0 35 .................................... CTTGACGTTTCCACCCCACAACCCTTACCCGCACC 112941 36 100.0 35 .................................... GAGTTCGCCGGATTCGACCGCACCACGAACAAGGA 113012 36 100.0 34 .................................... AGCACGATAAGCATACACAATACATCGGTGCACG 113082 36 100.0 35 .................................... GCGGCTCCCGCATGCACCTCGTACTCGCCATGGAA 113153 36 100.0 34 .................................... CAACTTATGGTGGCCGCACAATCCTCGACCAATA 113223 36 100.0 37 .................................... CCGTCAGAATCATCGGGGAACAGTAGCGCCCATGCGG 113296 36 100.0 35 .................................... TGGTACCAACCGTCTCCTGATAGTCATCGATTCGA 113367 36 100.0 35 .................................... TCCAGATTTTCATACTCTCCGGCATGTCCATATAC 113438 36 100.0 34 .................................... GTTTCGGATACCGTGGTCTTGAAGCCGTTCAGAC 113508 36 100.0 35 .................................... CAGAAGAACGACCCTGCGGTGAAGGCGAATCGTGC 113579 36 100.0 37 .................................... GCGAGCCAACATTCGTATCAACGGCGCCTATGCGGGC 113652 36 100.0 38 .................................... GAGGCCATCAAGGACAATCCGGGCTTCATCTTCGCCGA 113726 36 100.0 38 .................................... TCCACCGAACGGCAGGAAGCAATCTGGAAAATCTACGG 113800 36 100.0 36 .................................... GAGGAAGGCGAACATGCGGAGTGGAATCCATACGAG 113872 36 100.0 35 .................................... GCGGATAAACCGTCTCCCGCATTGAATGCGATGCC 113943 36 100.0 35 .................................... ACTGGGATGTGTATTCCGCGGAGCAAAGGATGAAG 114014 36 100.0 36 .................................... CCGACGGCAGCGGATACGTCGAACCGGACAACGCAC 114086 36 100.0 36 .................................... ACCGGCAACCTGTCGAGCAATCTCGTGGCGCGCGGG 114158 36 100.0 36 .................................... TCGTACGGGCACACCATCTTCGACGACGAAAGCCTC 114230 36 100.0 35 .................................... AGGCTTGGAGGCCTGCCATGAGCCTGCTTGACGAA 114301 36 100.0 37 .................................... GCCGCATCATCTCAGGCCACCAGATTGGCGAGGGTAG 114374 36 100.0 36 .................................... GACGTCGCGGCCTGCTTGGGCGCTATCATGAATGCG 114446 36 100.0 36 .................................... GAGAAGCGGGTCACGCCGTCGGCGAGGGTGATGGTG 114518 36 100.0 41 .................................... TCTGCAAGTACATGCCACACCACGCCGAGATCGGCGGAACC 114595 36 100.0 35 .................................... GAGGGTGAGAAGATCGCCAAGGCTTAGGTAGCCGC 114666 36 100.0 35 .................................... CCACATGGTCCATGCCGCGCAGTGCGCGCGAGACG 114737 36 100.0 36 .................................... ACGTTCGGGGGGCTCCCGTATGCCATTTGCGTGCCA 114809 36 100.0 36 .................................... ACGTTCGGGGGGCTCCCGTATGCCATTTGCGTGCCA 114881 36 100.0 38 .................................... AATTCAAACCGGCAAGTCCGAAAATCCTGAACGTGTAT 114955 36 100.0 36 .................................... TTCAGCAAGTTCGCGAACAAGGGCATTCCTTTCATG 115027 36 100.0 35 .................................... TCGAACATCGAACAGTCCTGGATCGAGTTCGCCGA 115098 36 100.0 39 .................................... GATACCAGACCCACACCACGACACACGCGAAAACACCAC 115173 36 100.0 34 .................................... ATGTGGCTGGGAAGTAAAGGCCTGAAGATCCTTA 115243 36 100.0 37 .................................... GTCCGCCCGCAGTTCGTCCGGCAGATGCGGTTTCGGG 115316 36 100.0 36 .................................... AAGAAAAACGGCTGGAACTCCGCATGCCGGTAGCCG 115388 36 100.0 36 .................................... AAGGAAATCGCAGAAGAAACCGGCACCGGCATCGAA 115460 36 100.0 36 .................................... GATACGATTCGTGCCGCCGATGGAAAGATTGTTGAA 115532 36 100.0 35 .................................... TGCTGATGACAGTAGGTAAGATTCACCCGCATTCC 115603 36 100.0 38 .................................... CTGGCGCAGACCGGCAAGGACGCCGAGAAACATTTCAA 115677 36 100.0 35 .................................... AAGGACTAGGCATGAAGGACGTGCTTGACCCTCAG 115748 36 100.0 39 .................................... TGCGTCCTGTGCGAACCATGCGGCCTTTTTTAGGTCTTC 115823 36 100.0 39 .................................... TGATCGGCACATGCCCACACTGCGCACGCCAGTTGCAAG 115898 36 100.0 35 .................................... GTGAAATATGTGTGGCGACATTACGTCACCCGCGA 115969 36 100.0 37 .................................... ACGCCGGAACAGTTCATGAAAGACAATGGCATCTCTC 116042 36 100.0 38 .................................... CGGCCCGTCTTCAATGACACCGTGCGGACAGGGATCTA 116116 36 94.4 35 ........................A..........C AAACTGCATACCAGCTGCATATGAAGTGCGTATAG 116187 36 80.6 103 ....T..GA..A.....T.....CT........... ACGTATTTCCTGTTCATGGGCACCCTGAACTAGATGTTTCTGAACGGCAATGCTCAGGTTTTCTGGGACCGACCGGCGTGCAGATTGCGTGCGTCGTGGTCAA 116326 36 83.3 0 ...........T.GT........CT.........A. | C [116328] ========== ====== ====== ====== ==================================== ======================================================================================================= ================== 55 36 99.2 37 ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Left flank : CGCTTATGATATCAACGATGATCGCCGGCGTAGTCATGTGGCAAAAATACTGCAACGCTGCGGTGAACGATTGCAATACAGTGTGTTTTTGCTAAGAGTGCGTCCATCAAAGATGCTTCAGATTCAGAATCTGCTTGAGTGTGAAATTGATGGATCCTGTGATTCCGTGGTTGTTTGTTTCCTTGGGAAAGAGGAACAAGCGAAAGATGGGATGAACTTTCTTGGCAGGCGTGGGTATAACGATTTGGATATTCCTACTGTCATTTAGCGGTTTTATCACATATGGAAATGTTGTTTGAAAACTAAAGAGTGTGTCATGCTGATTCTTGATATGCGAGAGCTGAATCGGTGGAAATGTAAAGTGGTAGCGCTCGCACCATATAGGATAACGACTCATATGTGTTTGCATCGTAAATGATGGTTGTTCAAGTGTGTGACTACAGCGAGTTCTCGCAAACCTCTTGATTGAGCTAATCGATAGGCTGAGTTAGAATGAGGCC # Right flank : ACGAGGCCACAGTTGATGAGGATGCTTCACATTCGGATTCAGTGGGCTCGTCATGCTGTGCTAGCACTGGATGCATCCCATAAATTGGAGTGCCTCATCCAGTTGAGCGGTTAAATCTCCGTCCAGCTCAGCAAAGAGACAAACCTCGATAAAGGCTGCAGGGCGATTAACGCGGCGTACTCTTCGTGGAGTGCATCAATGCGGCAGACAGGCATTTTCATGCCTCGAGGTTGTTCATTTAACCAATTCAGCCAGAATTACACAAACGCAGAGCTCACCCATGCCTCGTCTTGAAACACTCTTCGTCACCATTAATACCTAGAAAAGGAAATGGTCGGGATATGGAACCCGATCCAGACAAATACCATTCCTCAACGAATAGGCTCATACGTGGCGTGGCGTAACCGCATCCTGCGGGCTGCGCTACACTGGGGTGCGGCTCGTCATCTCGATGAGAGGACGAGCACGGTGATGGCGAGTATGAGCATAGTCGCATGCGT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCAGTAATGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 68350-68061 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSF01000004.1 Bifidobacterium dentium strain BRDF 5 sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================= ================== 68349 24 100.0 29 ........................ GTTCAAACCCTTCCCAGCGTCCCAATCCA 68296 24 83.3 29 ........T....AG....C.... ATTCAAACCCTATTCAGCGTCCCAATCCA 68243 24 100.0 29 ........................ GCCTAAACGCACCTCAAAGGGATAAAACC 68190 24 83.3 29 .............AG...T.C... GCTGAAACCCCATTCAGCATCCCAATCCA 68137 24 100.0 29 ........................ TATTGAAGCTCTTCTGGAGTCCTGATTCG 68084 24 83.3 0 C............AG....C.... | ========== ====== ====== ====== ======================== ============================= ================== 6 24 91.6 29 TCCAGCCACTGGAGAAATCATCCC # Left flank : CCGCGGACACCCAGGAGGACTGGCAGTCCGAGGCCGCGGAAAGCACGGAAGAGACCACCGACAACGACGCTGTTGCCGAGTCCGCCGAAGATGACGACGATCTTGACATCCCGATGGACCGCGTCGAAGCGGTGCTGAACGCCACCGTCGACAAGGACTCACTGACTCCTCAGATGCAGCGCATGATGAATCGTCAGGCTGAGAACACCCGCCGTGTCGAAGAGACCATCAAGGGCACCAAGTCCAACCCGCGTTGGTTCGTGCCACTGTTCTGCGCACTGATGATCATCGGTCTGATCTGGGCCGTGACCTACTACCTGAGCGGTAGTTATCCGATTCCGAACATCGGCGCATGGAATCTGGCCATCGCCGTTGCCATTATCATGGTCGGATTCCTTATGACCATGTGGTGGCGCTGATCATATCCGCCACGAGAGGGCGTCTGGGCGAGTCCAGACGCCCTTTTGTTATGTCCGGTCACCCTTAGCCGTCCCAAAACC # Right flank : ACTACGCGATCACACCTTAACGGTACGTAGCAGAATATGCCCACCGCCTTGGATGGTGGTGCCGAACAAGTAGGTATCGCCTCCATCGGCAAGCTTGAGCTTCTTACGCAACTGCGGCGCTGTGAGCGGAAAATTGCGTACGGCGACATTCGCCCTCCCGACCCCGCTCAGCAACCTCCTCACATCCTTCTTGCCCATGCCTCCAACCGCTTCGATGGCAAACCCGCGCCCTGGAAAATCCGTCACGGGCTCAGCGGCCACAAACAGGTGACTATTCGGTCCGATCTGCGTCACACCATACCGTTCCTCCAGCAGGTCGAAACAGCCGGCTTTCATAATCGATGCATTCGGCTCATACAGATATTCCATCTCCGGCAATGGCGCCGTGCCGATGTGCAACCCACGCGCATACACCGCGGAATCGTAATCAATCCGCTGACCGTCGTTCACGCAATACACATGTGGCGCACGTACGTCATCCGTCGGATGCCTCGTTTCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCACTGGAGAAATCATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //