Array 1 346563-345858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJH010000001.1 Megasphaera elsdenii strain WCA-386-APC-2A Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 346562 32 100.0 35 ................................ AGGCCCAGGCGGACACGGAACAGGGCTGGAATATG 346495 32 100.0 37 ................................ CTGGACACGAATGAAGTGGCCGATTTGCTGAGGGTAA 346426 32 100.0 36 ................................ GTAAGAATTCGTCGTGAAGCGGCCCATCACTACTAC 346358 32 100.0 35 ................................ ACCATAGGCCGGAAAACGGCACACACGGACGAATA 346291 32 100.0 35 ................................ CCGTCCGGGCGCAGACGACAACGCGCCACCTCGAC 346224 32 100.0 35 ................................ ATACGCAGGATAAACCGCCGCCGGAAAAAACTCGG 346157 32 100.0 35 ................................ GTGTACGCGGCGAATTTCCGGCTACATCGGAAAAT 346090 32 100.0 36 ................................ CATACATGGCAAGGTTTGGACTTTTTAGGCTATCGC 346022 32 100.0 34 ................................ CGTTTGATACGGAGGAAAACGTTGTAGACCGTGA 345956 32 100.0 35 ................................ CAGACAAATAACGCCATGAGTAACGCCGGCAGTGG 345889 32 96.9 0 .......T........................ | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 99.7 35 GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Left flank : GTTCACACGACAACTAAGTCGCGTCGATACTGGATTTTATGGTATAATATAATTGTCGTTTTTGTGGATTCCACAAGGACGTGGATTGAAATTGTAACGTTGAATAGTAAGTGAGGTGGAAACCTGCCGTATGCTAACCCTGCGGCAGGTTTTTTCTATAGATATTAAATTACTAATCAACATTACAGAATTATATATTGATTTTCTATGGTGAAAGAGGTATACTAACCATATAAAATAGATTACCGAATTAAGACAGGGCATCTTGGCTATCCGTATATGTAACCCGGTCATACCGAACTCTGTCAAGACTGATTTATAGAGAGAAAGTGGTGCGAAGCGGCATCACACATAAAATATATCGGGGTTCCGCGCAGGCCTTACTTTCTATAAAATTAAGCAATATCCAGATAATTAACTCAAAAAATTAGATTGGTTTTCTCTCAGTTCGCAATATAGATGATAGAAAAGCAGGCGATGACTGAGTTAATTTGAAGACT # Right flank : CACATGGAGGCTCCGCCTTGTACGGATACTTACAAGTCTCACCTTTCATGGGAAAAAAAGAATGTTAACTTGCTTTAGATTGTTCGGGCAAAATTACTGCGGAAGAGAATCTTCAATGGTGAGAATCCGTATTGGGATGGGGAAATGTTTTTATGGATCAGCAGTCGAATTTTACAATATAATGAGGGGGTGTCTGTTATGGAATACGATGAAAATGATTTTTTGATGATTTCAGGGATACAACATTTTTCATTTTGTCCTCGACAATGGGCCTTGATTCACATCGACCAGGTTTGGGATGAAAACATGAAGACGATGGAAGGCAATATTATCCATGAAAATTGCCATAATCCAGATTTTATAGAGAAGCGTGGTGAAATTCTTATTTCTCGCGGGATTCGGATTGCTTCAAGGACTTTAGGTGTAACTGGACAATGTGATGTGGTGGAATTTCACCGGGATGATGGTGGAGGTCGTTTATATGGACATAATGGCTTATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 106695-109665 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJH010000010.1 Megasphaera elsdenii strain WCA-386-APC-2A Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106695 28 100.0 32 ............................ TGTGCATAAGGCGTCGGCTGGAAGGCTGCAGA 106755 28 100.0 32 ............................ ATCGAACAGGATAATCAAATCAAGAACGGTGA 106815 28 100.0 32 ............................ TCCTTGGGGAACCTCCAGAGCTTCGCCGCGAC 106875 28 100.0 32 ............................ GCCATCACGCCCGGAGCATCGGCGAATACAAG 106935 28 100.0 32 ............................ AACAGTCTTCACAGGTCTGGCCGTCTTCGTTG 106995 28 100.0 32 ............................ GTGAACGTTTCCCGGAACTTCTTTTCATAGAA 107055 28 100.0 33 ............................ CCATAGCTGCACGACCTTTCCATCAGAGCAGGC 107116 28 100.0 32 ............................ CGCAGCAGGAATCGAACGTCGGATTGGCACCA 107176 28 100.0 32 ............................ AGCAAGGCTTCGACCTGGGCCTTGAGTGTTTC 107236 28 100.0 32 ............................ TGCCTTGAGGTCGTCGCGGTCGAGTTCCCATT 107296 28 100.0 32 ............................ TTGAGGGCCGTGTTGGCCGTCGAGACGATGCT 107356 28 100.0 32 ............................ TCACGGTCAACGGCCAGGCTAACCTGAAAGAC 107416 28 100.0 32 ............................ ATCAACTGTGAGGTCTTTGCCAACATGGTTGT 107476 28 100.0 32 ............................ GCTGTGCTTGCCTGCGATATTCCAAAGCGTAT 107536 28 100.0 32 ............................ AAAAGGCTCGTCTTTAATTCGACGGCCAGGTT 107596 28 100.0 32 ............................ AAGGACTTCTCCGTCAGCGGCAACACCAGCCT 107656 28 100.0 32 ............................ ACTAAGCTCTACATATTTTATAGAGCCGTTTT 107716 28 100.0 32 ............................ AATGGAGCATATGACATGCGCCATTTCGATGG 107776 28 100.0 32 ............................ GTTGACTAAGCCCGTTACGACAAGGTTGATAT 107836 28 100.0 33 ............................ AAGGTAAAGACATGCCCGCAAATCATACATTTT 107897 28 100.0 32 ............................ ATTGCTAAAGTCGATAGGAATATCGACAGAGG 107957 28 100.0 32 ............................ TGAATAGCAACTGTTTTATCTTGTTTGCTCAA 108017 28 100.0 32 ............................ TCGACGGCGTATCGCTCGAAGCCGGAATATGG 108077 28 100.0 32 ............................ TTGATGATCCAGCCGAGCATCGTGATGCTTGC 108137 28 100.0 32 ............................ AGTAGATGGCGTCATCATGGTCACGGCCGTAA 108197 28 100.0 32 ............................ ATACATAGGTCTTCTTATTTTTGGTAATGACG 108257 28 100.0 32 ............................ AACGTATCCTGGCCTTGAACTTCATTCTTGAT 108317 28 100.0 32 ............................ ACCAGATGCCACCCGGCATGATTATGTGCGAT 108377 28 100.0 32 ............................ TTCTGTTCGCCTGAGCATGTTCCTCAGTGCAT 108437 28 100.0 32 ............................ GTTGGATCTGACGACGACCGTAAACTGCTGTC 108497 28 100.0 32 ............................ GTAAAGGTCATCGACCGCCAAAACCGAAAACC 108557 28 100.0 32 ............................ AGACGGATTCCACGGCAACGTGATAGGTAATT 108617 28 100.0 33 ............................ TGTTTGAAAAGATGGCGCCATCAGATTTCCTGT 108678 28 100.0 32 ............................ ATAAGCACGACGGCGACATCGGAGCCATTGAC 108738 28 100.0 32 ............................ TTAGAGGTTAAAGACAGATCAGCCATGACGGC 108798 28 100.0 32 ............................ TTTCGTGTAGCTGTTGCCTTCGGTCGTCTGGT 108858 28 100.0 32 ............................ TCGATGAGATGATCAAAGCTGAAATGGAAGGC 108918 28 100.0 32 ............................ AGCAACTCCAATGTCATTGCCGATGGTAATGT 108978 28 100.0 32 ............................ ACGGTAACGGGCAATTCCGAAACGAAAGGCAA 109038 28 100.0 32 ............................ GTTTCGAGGAACCCCGTAAAGCCCATACCGTT 109098 28 100.0 32 ............................ ATCGTGTCCTTGTACTACTCGAATCCCTTGAA 109158 28 100.0 32 ............................ AGAGCGTTTCCCCCTCTTCCACATAGTGGACT 109218 28 100.0 32 ............................ TTTCGTTGAGTTTGACCTGGACATGATTCTTA 109278 28 100.0 32 ............................ TTCGCGGCCCGCAGGATGGAGACGGTCTCGAG 109338 28 100.0 32 ............................ ATGGACGCCTCATCGACGACGATGAGCTTGTA 109398 28 100.0 32 ............................ ATACTACTCAGCTTACGAGGCAGTAATGAGGC 109458 28 100.0 32 ............................ GGGAAGGGTTGCTCACGGAGGGCGAGAAAATC 109518 28 100.0 32 ............................ AGGATGGGAATCTGGAAGCTCAGCAGGTCTTT 109578 28 96.4 32 ...........T................ GAAACGATGACGGCGCAGGAAGCGGAATCTCT 109638 28 96.4 0 ........................T... | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.9 32 GTTAACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATCTGCAGCGTTTGAATCTGCCTGATGCACTGAAGCGTCTCACACCAGATTATGTGAAAATCAAAGCCATTCGTCCAGTCCCCGTCAGATTGTGCAAAGGCTTCGTGATATATAGCCGCTACCAGCCGGAGGCTACAACGATGCGGAAAGCTAGACGATATGCAAAACGACACGATATGTCGATAGAAGAAGCCCAAAAGCTTTTCCCGGCATCTAGCAATAAGATTCGATATCCGTATATCCAATTGGAGAGTATGACCAATCACCATCATTTCAGCCTGTTCATCAAAAAAAAAGAAGCGGTTGAGCAGCCTTGTAAAGGATTCTCTGCATATGGGTTCAGTACTGAAACATCTGTCCCTGATTTTTAACCAAAAAATTTTCCTTTGCTCGCAGGCCTTGTAAATCAAGGGTTTTGACAAGAGTCTAAAATTTTGGTTAAATAAGAGTAAACCGCTGCGAGCTTAAGCAGCATAAGGATATTTGCGCAAAAGACTACT # Right flank : ATCTTCCATTTTTTCATTTTAGTTGTGCTGGTCATGTATTTTGCAGAAAATCTACCGACTGCTATCACGGCAAGAAACATGGTATAATGAAAGAAAAATGTCAGAAAGAAGTGGAATCTATGATTAAACGTTGTAATCATGACTGTGATTTTTCTTGTCAGCAGTCAGAAGATCAGAAGATGCGTGTCATTGTTGAAGAGCATGAGAAATTGTCACCGAATCTTATTTTTGAAATCATCCGCCACGATGGCGAGATGGAATTGGAACGGCCGGCCTGGCCTTTGATTTTGTCAGCCTTGGCGGCAGGCTTGATGATTTCGTTTTCGTTTTATTTCCGCTCTATCATCCATGTCTATGTCGGCCAGGCTCCCTGGACGGGGGCGATTACGGGCTTCGGCTATACGACGGGGTTCTTGATTGTCATCCTCGGGCGCTTGCAGCTTTTTACGGAAAATACGATTACGACGGTCATTCCTGTCTTCCGCGTACCTTGCTGGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 103094-98945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBJH010000008.1 Megasphaera elsdenii strain WCA-386-APC-2A Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 103093 32 100.0 34 ................................ TTTTGGTGGCGATGCCAGCCGTGACATTGTAGAT 103027 32 100.0 36 ................................ CCAAGTCGTCGGCATTTCCAATAATGCTAATGGCCG 102959 32 100.0 36 ................................ GTGGATTGCACTTTGCATCTAATTTTTAGACGCCGA 102891 32 100.0 36 ................................ TCCTTTTTTGTCGCTGCGTTTTTTATATTCCCGCCA 102823 32 100.0 36 ................................ CAGCACCCAGTCCTGGAAGGCGGCTGTGGTCAGCTC 102755 32 100.0 35 ................................ TACTCGTACTGCAACACTGTCATGAACGCTCTCAT 102688 32 100.0 34 ................................ TATAAAAGATGGTACACTTTGAGTGAGAAAGGGA 102622 32 100.0 36 ................................ AATTATCAGCGGACACCGGCGCTGCCAGGCAGTCAA 102554 32 100.0 33 ................................ ATATCCAGACAGCCGCAGGGAACCGAACGTTGC 102489 32 100.0 33 ................................ ACTGCGATAACATCCGCTGCAAGTACAACCGCA 102424 32 100.0 36 ................................ TGTTCGGTCCGGAACACGCAGCGGAACGGGGATACA 102356 32 100.0 36 ................................ AACGAGAATGGCACCTGGGGGCTGAATGACATGCAG 102288 32 100.0 36 ................................ ACTGTATGTGTATCAAGGACACCAAAGAGAATAAAA 102220 32 100.0 35 ................................ AGCGGTCAACGCTATCCAAGCGACAGCCTATAGGA 102153 32 96.9 34 ......T......................... CTCTGGAAGACCGTGTAGCATGGGTAGAGGAAAA 102087 32 100.0 34 ................................ CTAGTACGGCTTCACCTGCTCCCGAAGCTCCTGT 102021 32 100.0 37 ................................ GCTTTTAGTGTAGTAATTCGACAGGTCTACGGTTCCC 101952 32 100.0 36 ................................ TTAAATATAGACTCCGTGCAGGTCATAAAGGAACTA 101884 32 100.0 36 ................................ TTCCCGCCACAAGCTTTCAAATCGTTCCGGAACTGT 101816 32 100.0 35 ................................ ACAGCCAGCCGCTTCAAGATATTTTTGCACAGCAG 101749 32 100.0 35 ................................ GAACATACATTGTGTCTCCTCCTTTACAACAAAGA 101682 32 100.0 36 ................................ ACATAGTGGACTTTGGAGATTTCCGCCGCCTTCTGC 101614 32 100.0 33 ................................ GCCTCCGGCACGTCGCGGACGATTTTGACCATG 101549 32 100.0 36 ................................ GACTGATTGAAATAAAAAATATGCCAGCAACTCTAG 101481 32 100.0 36 ................................ TACGCTATGCACCATGACGACATGCGTCTGCCAGTT 101413 32 100.0 36 ................................ TATTTTTTGGTTCCAGCATTTACCGTCATATACTGC 101345 32 100.0 36 ................................ ACTAGAATTGCGATACCAATACATCGCTGCATTGAC 101277 32 100.0 35 ................................ ATCGTGGGAAAAGGATATGACTGCAATGATAATGA 101210 32 100.0 34 ................................ CTGGCCTTTGCATCCGGGTCCTGTTTCTCCCACT 101144 32 100.0 36 ................................ TTGAAAATGCTGATGGCATGATTTTAATTACTCGTG 101076 32 100.0 35 ................................ CGTATGGTAATGGGCAGGATGCAAGCTCTTTCGGT 101009 32 100.0 36 ................................ ATTAAAGATTTTAAACATCTCTGTACAACTTTTCCC 100941 32 100.0 36 ................................ ACTTTTTAATGCCGTAAATGTTTTGATATCATCACT 100873 32 100.0 40 ................................ TACTGATTCTGGCTTTTAGCTGTCCACGGTCCATAGGCCA 100801 32 100.0 34 ................................ ATGGACTATTACGAAAGCAACGGTTGGAAGGTGG 100735 32 100.0 35 ................................ TCAGCCCTGTGAGAAAGGAGGGGATACCGTGGCGG 100668 32 100.0 35 ................................ CCCAGGTGAACACTCCTATATACTTTTCGTTTCTC 100601 32 100.0 35 ................................ TCTACGGCAGTAGCAACTAAGACGGATGATTCCGT 100534 32 100.0 35 ................................ AAGAACTCAATTACATCGGAAAATACATTGATGGC 100467 32 100.0 35 ................................ TCCATTGGCCCCTTTATGGTCATTTCCGTCTCCAT 100400 32 100.0 37 ................................ GTATACTACGATACTGATGAAACAGGCGGAGTGACTG 100331 32 100.0 37 ................................ TCGACGAGATCGGCTTTGATGTCACGAATGGCGGCGG 100262 32 100.0 36 ................................ AACATTTGTGTTGAAAGCGTTTTTCGAGGCCGCAAA 100194 32 100.0 37 ................................ CTCGTTCCCGCATATCAGGAACTTCAAACAAATCCGT 100125 32 100.0 36 ................................ TCTGCCGCTTCTCTTCGACACCATAAAGGTAATCGC 100057 32 100.0 36 ................................ AGCGATTTAATGCGCCCGACGTGAGTAATCTGCGGG 99989 32 100.0 34 ................................ CGTTAAATACCAAATATTTCCGCTGCCCGGCTCC 99923 32 100.0 34 ................................ AGCTTGTTGTTTGGCAAGTTGTGGACCGTCGTCA 99857 32 100.0 35 ................................ AACGTTGACCCAGTTGTCGCGGCTTTTCGGCGGAT 99790 32 100.0 33 ................................ TTCTCGATGGTTTTGGCCTCCATCTCCAGCTCA 99725 32 100.0 36 ................................ ATTCGGTTCGCGCACTTCTTTGGTGAGATACTGGGC 99657 32 100.0 36 ................................ ATCTTATCAACCAGCTCCTGCAGGTAGTCCAACTGC 99589 32 100.0 35 ................................ GTATACGACGCCAGCTTGCGGCTGTACAGTCCCTG 99522 32 100.0 36 ................................ AACGAGGAAGTGTAAATACCTGCGCTGTATCCTGCT 99454 32 100.0 37 ................................ CTCTGCGAAGAAAGCCTTGGTCAACGTAGCTCTGTAT 99385 32 100.0 35 ................................ AAGCGGGATGGCCTGCTTAAATCGGAAACGGCTAT 99318 32 100.0 36 ................................ GCTCCACACATTTACGACGCAGAACTTAAGCGCTGG 99250 32 100.0 39 ................................ TGACCATACCGTTACCAATGTAGATACCGACATGACCTG 99179 32 100.0 36 ................................ ACAACTACACATTAACGGTAGCAAGGCAAATCAAGC 99111 32 96.9 35 ...A............................ TAGGGATTATGACGTAAATCCTCCTGAACCAAAGA 99044 32 84.4 35 ..T........AGAA................. GGCGATGGCGTACCGGTTAGGCCGACGATACGGCA A [99034] 98976 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 62 32 99.6 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAGACGGCTATGTATCAGCCAACCTGGCACGGAAAGTGACCGGTTTCAGTGAAGACGATTTACAGTATTTATGGAAAGCCATCATTAATATGTTCGAATACGACCATTCCGCTGCCAGAGGGAATATGGCTGTGCGCGAACTCATCGTATTCAAACACGATAGTGAATTGGGAAATGCTCCAGCATATAAACTTTTTGATACTGTTCACGTCCAGAAAAAAGAAGGCGTCGTCGCGCCCAGAAACTATACGGACTATGACGTAACCGTAGATGAAAGCAAAATCCCGGAACACGTTACGTGTACCCGGATGATTTAAACGTAGGAAAGAGGGGGTGCGAAGCCGTATCACACATAAAATATATCAGAGCTTCGCACCCGGCTTGATTTCTATAAAAATAAGCAATACCCGGAGAATTGACTCAAAAATTGAACTGCTATTCAATCAGTTCGCAATATGATTGATGAGAGAGCAGATAGTGACTGAGCCAATTTGAAGGCT # Right flank : TTTTGGTTTCTTGAAAGCCAGCGGTCAACTGCGTCATCATTTTTAAATTGAAGGTATTGACATCCATTTTATCCTCCCCAAAAATAAGCAACAAAAAAGCAGGGTCATTTCTGACTCTGCTTCAGCAAGTTGCCCGGATTTGAACCGTGATCTTCCTCAATCAAGGCGTGCGCCCCGTACACTACTACTTGCTATTTAAATTATACCAAATTTTTGTAACGCGTGCTACCATCCTTCTTTCTTTTGTCGTTAGGCGATGCGTTCCATTTTCGTCATGTAAATATCCTTCATGAGTATGTGCGCCCTTGATATTTTTATGTCCATGTAATAAATTAATTGATTTCTTGCGTTTTAAATTTTCGTTGAAATAAATGATGGAATTCAGCCGGTCCCCGGTCGCACCCTTCACGGGTGCGTGGATTGAAATTCGAATAGAATAGTGAGTTGGATTGTCTTTTTTTAATTTGCCTAAATCGGTTTCGTCTGCTATAATATTAGAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //