Array 1 251802-249331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000049.1 Streptomyces antioxidans strain MUSC 164 49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 251801 29 100.0 32 ............................. GTCATGGAATCCGCAGATGAACCCGGCCAGCG 251740 29 100.0 32 ............................. ACGCTCGATAGCGCGGACCATGGTGGTGACCC 251679 29 100.0 32 ............................. CCTGCTGCCCCCACCGAACGGGCTGACTGCCC 251618 29 100.0 32 ............................. CACGTCCACGCTGACCTCCGGCTCCTCCAGGA 251557 29 100.0 32 ............................. GCTCGCTTCCCCCTCATTCACGGACAGGCCGT 251496 29 100.0 32 ............................. TCGTGCCGGATCACCACCCCGGTGAGCCTCGG 251435 29 100.0 32 ............................. GAGTGGTGCCATTCGAGGTCATGCGAGAGCCC 251374 29 96.6 32 ............................T TAGATTTCGAATTGGATGGAATGCCGGGCCGA 251313 29 100.0 32 ............................. GCGAACAGCCCGCCGAACGCGGGGACGAACGC 251252 29 100.0 32 ............................. GATGATCGTCCTCGGGCCTGCGCCTAGGCACA 251191 29 100.0 32 ............................. TCCCCGCTGCCCGCATCCACAACGAGAACTGA 251130 29 100.0 32 ............................. TCGGCGGTGCTGCCCAGTGGGCCGAGGACGGC 251069 29 100.0 32 ............................. CCGTACCAGCTGCTGCAGTACGGCCGGATCCT 251008 29 100.0 32 ............................. GCCGACCGTCCATGCCCGCGCACGCCCTGTCC 250947 29 100.0 32 ............................. GCGAGGCTGTATTTCCGGGAAACAGTGCCTGT 250886 29 100.0 32 ............................. CCGGACTCCAGTCGAACAGCGTGGACGCCGTC 250825 29 100.0 32 ............................. TTGTACAGGGGACCGGTAAGGCGCGGGTAGGC 250764 29 100.0 32 ............................. GTTGGCGACAAGGTGACGCACCGGGTGTTCGG 250703 29 100.0 32 ............................. CGGTTGGTGCGACGACCACCGGTCTCACGGGC 250642 29 100.0 32 ............................. ACCCTTACGGGCCCCTCCGTCTCGCGGGGTGG 250581 29 100.0 32 ............................. TTGGGGCAGTCCGCGGTGTGGCACATGACGGT 250520 29 100.0 32 ............................. GCGGTGCGGCCAGCGCGCGTGGCATGGAACTT 250459 29 100.0 32 ............................. CGTGCCACCCGTATCCGTACCGAACTCCGGGC 250398 29 100.0 32 ............................. GCGTCCGGCAAGCAGGACCGCCGCCGGATCCT 250337 29 100.0 32 ............................. GTGCGCGTACGACAGCCAGAACGCTCCGGCGG 250276 29 96.6 32 ................A............ CAACTCCCGGCGATCCTCGCGCCGATCCTGGC 250215 29 100.0 32 ............................. ACACTCACCGCGAAGCAGCGGGAGGCTTTCCG 250154 29 100.0 32 ............................. CGACCAGACCATCCAGCGCGAGACGAGGGGGC 250093 29 100.0 32 ............................. CAGCTGGCTTTCGACCACGCCGAAATCCTCAG 250032 29 100.0 32 ............................. TCGGCCGATCCCGCGTGGAAGTCGGACGCCCC 249971 29 96.6 32 ...............A............. TTCTGGTCGTCATGGTCGGCTCCATGCACAGA 249910 29 100.0 32 ............................. TTGCTGCCCGGTCGGTACGCCTCGCCCGTGGT 249849 29 100.0 32 ............................. CCGGAACCCCCGGGCACGGGTCAGCCTCGCAC 249788 29 93.1 32 T..............A............. AGTTCACTCTCCCTGATGAACCGGGCCAAGCC 249727 29 96.6 32 ...................C......... CCTGCCCGCGGTGGCGGCTTCGACCTTCCGCC 249666 28 96.6 32 .....................-....... AAGTTCGAGAAGTTCTGGGACGACCAGCACGA 249606 29 100.0 32 ............................. CCCTCCATGACGGTCTCGGTCTCCTCCGTCTC 249545 29 100.0 32 ............................. GAGCGCAAACGCGAATGGGCGGGCACCGTCTA 249484 29 86.2 32 .........G..G...C.......C.... CCGTGCCAGAACAGAGCACCCATAGTCGCGGG GGG [249463] 249420 29 93.1 32 .C..........................A CTCGGACGGGATCTGACGCTGACACGGCTACG 249359 29 89.7 0 .........G..G...C............ | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.7 32 GTCCTCCCCACCAACGTGGGGGTGTTCCG # Left flank : GCAGAACCTGCTGGCCCCCGACCACACCAACACCCTCAACGCCGAGGCGGGAGAGGGCGACGAGGAGGAACGGCCCGAACGCCGCGACGCCCAGATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTGCCCGCAGGCGTCAACTACGCGTCCGGAGGCGACTGATGGCCTCGATGCTCGTGATCGCCACCACCGCCGTCCCCGACCACCTCCGAGGCGCCCTCAGCCGCTGGACCAGCGAAGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTCTGGCAGGCCGTCACCCAAACCGTCGGCGACGGCGCTGCCGTCCTCGTCCACCCGGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCGGGCACCCGCCGCCGCGTCCCCGAGGACTTCGACGGGCTCACCCTGATCCGCATGACCGCACCACCAAAAGTCAAGGAAATGCAAAGCCCCTCTTAAGGTGCAGGTCAGGAAGA # Right flank : CGGGTCCTCATACCGCCTCCTCCCCACCAACTTACAAAGGCGATGCGAAGAGCGGGTACGAGCCATCGGCCTAACCGGTGATCAGCACCTCACCGTTGAGGATCTATGCGCCCGGCTCGGTCGCTTGTACGGCCGTCCGATCCATGTCATTCCCCTCACGCTCCCCCGCGGCAGCCCCGACGGCCTGTTGGTATCTGCCGATGACCGAGACTTCATCGTGGTTGAGGATCGTCTCGCCCCAGTGCATCAGCACCAGGTGATGCTCCATGAGTTGGGGCACTTTATATGCGATCACGAGACTACGCCCGTGATGACCCCTGAAGCCTCCCGGCTTCTCCTGCCCTCGCTCGACCCGGATCTGGTCCGACGCGTACTCGGCCGCGACCATTCAAACTCAGAGGCCGAGCAGGAAGCCGAATACGTCGGGTCGATCATCGGTCGACGTATCAGCACCTGGGCCGTCGAGAGCACGTGGGACATCCCTCCAGAGGCAGAAGAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCAACGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCAACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261702-262583 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000049.1 Streptomyces antioxidans strain MUSC 164 49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261702 29 100.0 32 ............................. TCGCCGAAGCCCTCCGTGTCGTGGACAGCCTC 261763 29 100.0 32 ............................. CCGGTGACCACCCCTGAGCCGCCCACCGTGCC 261824 29 100.0 32 ............................. CGCCACCCCCACTCCCGGGCCGAACCCGTCGG 261885 29 100.0 32 ............................. TTCGAGCAGCTGGTGCGGGCAGTGGAGGCGGA 261946 29 100.0 32 ............................. CCGCTGGTGAAGGTGCTTTCGGGATTGCGTGC 262007 29 100.0 32 ............................. TGCCGGGCCGGGGCTGGCAGGCGCTCAGGGGG 262068 29 100.0 32 ............................. CCGGGAGTTGGGAGCTGGCGAGGGCATCTGCC 262129 29 100.0 31 ............................. CGAGTACTACGGGGAGGACAGCGCGATCGTC 262189 29 100.0 32 ............................. CACCTTCCGTGGTTTCGCGACGGCCCAGACGA 262250 29 100.0 32 ............................. GCACCCACGACTGCCCCAAGTGCGGAGGCGGC 262311 29 100.0 32 ............................. GTGCCGATGGCTGCGCCCGTCCAATAGCGGGG 262372 29 100.0 32 ............................. TGCCCCGGTGTGGTGGTGCTGCAGCTCTACGA 262433 29 100.0 32 ............................. ACGAGCTACCAGGCCCACATGTTCGAAAGGGA 262494 29 100.0 32 ............................. CATCACCCGGTCGGGGTCGGAGGTCTTGTGGC 262555 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Left flank : AGAGCTTGCCGATGTCGTGCAACCCGGCACACAGTCCGACCAGAGCCCGGGCCCGCTGCAGTTGGCCCCCAAGTCCCATCCCCTCGGCAATGCGGACTCGCTGGTTCTCCGACAGATAGACGTCCCACAGATGCAACGCCATCGCCGCCGCATCAAGAAGGTGCCTCACCAGCGGATACGGCGGCCGCTCCGGATCCAGGCCCCGCGACTTCCCCCACACAGACTCATCCGGCACATCTTGCTTGCCCATTATGACGTCCCCTCCCACTTCAACCTGGCTCGCGTCCGCCGTATGTGTGAGGCCGCTCCGCTGACTGATCCAAGCACCCACCACTGACACCTTGGCCCGACTGCTGTCATCCGACGGTTTTGCCACCGAGCGTCGCCCTTCCCGAACGTGCCCCGGATAAAGTGGGCATCGTGCAGACCCTGGAGCGTTTCACCTCATCCGACATGGCAAAGAACAAGCAAAGCCGTTCCTAAGCCGCAGGTCAGAAAGA # Right flank : CCCATACCGGGCCCGGACCACGTCGACCTCGGGTTGCGTCCTGGGAAGTGGTGTACGGGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.30,-12.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11472-12353 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000057.1 Streptomyces antioxidans strain MUSC 164 57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11472 29 100.0 32 ............................. GAGACGCAGTACAAGGAGATGCGGCAGCAGGA 11533 29 100.0 32 ............................. GCGCGGCGGGTGCGCGGGACGTAGGTGGGCTC 11594 29 100.0 32 ............................. GACCGGCGCGAGCGATGCCGCGACTGTGGCGT 11655 29 100.0 32 ............................. AGCAAGACGAGGACACGCGCGTCACCGCGGCT 11716 29 100.0 32 ............................. AACATCTCGCGCATCTGGGAGACCGACCCTGG 11777 29 100.0 32 ............................. ACCCGCCTGCGCCGCACGATCCAAGACTTGGA 11838 29 100.0 32 ............................. CACCTCGCCTACATGGGAATCACCGCCGTGCT 11899 29 100.0 32 ............................. CCGGCAAGCCCCGACGGCGCCGCCCCAACGAA 11960 29 100.0 32 ............................. GTCATTATGGCTGGTCAGAGCGCTGTAGCCCT 12021 29 100.0 32 ............................. CCGATCCTTGTGACCGTGAGGGATGGATGCGG 12082 29 100.0 32 ............................. GATGAGCTGATGGCCGGGCACAAGCGGTGGTG 12143 29 96.6 32 ...........A................. TACGAGAAGGCGTACGAGAAGCGGCTGGAGAG 12204 29 93.1 32 ..............T..........C... AAGGCCATGGGCCTGATCCTCCAGGCGCTCAT 12265 29 75.9 32 ...T......AA.A..G....C......T CGTCCCAGCTACCGCCTCACTGCGGTGGACTG 12326 28 82.8 0 ............T.T......-.C.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.6 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ATCAGCGTAGTCAGCTTGGAGCTGACGAAGATGACCTTCTGGAGCGTGCCTTGGCGGAAGACGCGTGGCATTGGGAGACGTATCAGCGGTCGATTTCGGCTGAGACGCTACGAAAGCGACTGCATGTTGGCGCGGCCAGGTCCCGGACGTTGGTGTCCATGGTGCGCTAGATGAGGGCTGGGGGAGGCGACGAGGGGGGGCATCGTCTGGCGAGGGTGGTCCTTCACCTTCTCTGCCTTGTGGTCAGGCCGCGGCGCGGGCGAGGAAGGCCCGAGGTGAGCCCCTCTATAGTGCCCCTCGATGCGGCGGCATCCATAAGTGGCGGTATGGCGGGGAAGCGGTAGGAGGCTGTGCTGACGACCGTTCATGTTCGGGAAGATGGTATGAACTGCGTGGAAGCGTGCGCCGTGGACCACGCATTGCATATGCCTGGAATGCCGGATTTGGTGAAAGTGCTCTTCCGGGAACCGACTCCCAGATAAACGTGCAGGTCACGGAGT # Right flank : CGGGCCCGCCTCTGGCGGATCGGATCATGCCGTTGGCGCGGGCTCCATATAGCGCACGACGGATGCGGCGCCTGGGAAATACTCCGCTGGTCGCAGGGCCAGCCGCCTCTCAGGTTGACGCCGGCCTGCGGGTAAGCGTTGTACCGAGGGCGGGCGCGGGCCTCACCCGAGCTCACCCCCGGTGATCCCCGCGCTCGCGGGGCCAACCCGCTGTGAAGACGTAGGAACGGAACATCCCCGACCCGCGATGGTGCGTTGGCGAGTAAGACTGGGGCAGGTGGATTCTGGCATTCATCATGCGGAGCCGTGGGCTGGTGTGCAAGGCTGACGCCACGTCGTTAGACGGAGGAAATTGGGAGGGGAGCCCAATTTTGTTCAGTTTGCTGGATGAGCCGTGGCTGTCTGCGAGGACTGTCGGCACAATTGCAGGAGGAGAGCCGCAGGGCGGGCTTGGTCCGGTCGAGAAGGCTGGCGTTCGGCGTCTCCTTCTGAACGCAGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27283-28406 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000057.1 Streptomyces antioxidans strain MUSC 164 57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 27283 29 93.1 32 T............T............... CCGGACACGGTCATCGTCGGGCAGCGGGTGTG 27344 29 96.6 32 ...........A................. GACCAGGGATTCTGACCATGGGAGAGCCCCCT 27405 29 96.6 32 .........A................... TCGTCGGCCATCATCAGGGCCGGGATACTGTC 27466 29 93.1 32 ..............T.........A.... GTTCTACGCTGGCAGGAAGGTCGCTCGGCGTT 27527 29 96.6 32 ..........T.................. GCCAGGCCATGTACATGCAGATGCAGCGGATG 27588 29 89.7 32 ...........A.TG.............. GGTCCGGGCACCGCGCCGAGATCGATCGGCTG 27649 29 100.0 32 ............................. ACGGCCAGCCACCCGAGTAAGCGGGCGATAGT 27710 29 79.3 92 ...........CGA.......G..T...G CTCGCGCCGGTCACCTTCGCGAGCGTCTTCTCGTGCTCCCCACCGACGTGGGGTGCTCCGCTGCCATCCGGATGGCCCGAGCGGAGAAGACC 27831 29 82.8 32 G.C........CGA............... CCTCTCTACGGAGCGGCAACGGTCATCACCTT 27892 29 86.2 32 ...A.....A.A.........G....... TGGGGCGGTGGGCTTCGTCATGCCTGGGTGCA 27953 28 89.7 32 ........T..A.....-........... GTCTGAATTCAGCGCACACCGAAATCGGAAGG 28013 29 93.1 33 ...T.......A................. GAGACGCTGCTGCGTCCCGGTCAGGTGGAGGCG 28075 29 89.7 32 ...........A..T.............A GCGGCCAGCGGCCGGGTACGGTGGCGGGCCTG 28136 29 89.7 32 ...T.......A....T............ TCGGTGACGCCGCGGCCGGCGAGCATGTCGTC 28197 29 96.6 32 ...........A................. GGGCCTCAGTTCCGGGGGTGCCACGGCCGCGT 28258 29 100.0 32 ............................. GACAGGATGCGGACGAGGGCCGGTGCTAGAAG 28319 29 100.0 30 ............................. GCCATGGCGCGCACACGGTGCCTAGGCGGC 28378 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 18 29 92.7 36 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCAGATTTGGTTTGGCCGCACAGCGCTCCTCATCTCACAGAAATCACTACCGACATCACCTGATGCGTGGCAAGGTTGGCTGCGCCCCAAGCGAGAACAGTCACTTGCCCGCTTCGTCCGAGTAGATAGTGTATGGCCGTTGGGCGGCGAACAGGTCTGCGGTAGTGATTACCCCTCTACGGCGGAGCGGCGGTCCGAGCGATCCGTATCCTTCCGGCGTTGGCGGTTGTCGATCAAGGGGGTGCCCTTGTCGTGGGGGCATATATTCTGTCGAATGCTGTAGAAGCGTGCAGGGTCGCCGATCCGGACACGGATCGTGTCGTTCTCCACAACGACGGCGGACGCCGGGTGTCCGCCGGGCGCAACTACGCCGAACACGAAGGCCCGGACATCGAGGAAGCGCTCTGGTGGCCGTCATCGTCCTGACCAACTGTCCGCCAAGTCTTCGAGGCTACCTCACCCGCTGGCTGGCGAACCGCACTCATCATGGGGGACTGGAA # Right flank : CAACAAGGGCGGGGCCAAGAGGTCCGCCCCGGTGAGAACGGCGGGGACTTCCTGCGTGACCAACCCCTCAGCTACGCGGCCGAGTCCCGCCGTCATGCCCTGCGCCCCGTGGTCACCGAGACCGTGGAAGTACCCCACCCCGACGTCCAGGCCGCCGCGATGGCCACGATGCGCGTGCCTGAGCACGACCCTCTCGCCGCTCTGGAGGAGAGCAACTGATGTACCTGTCCCGCTTCCGGTTCAACACCGCGCGCCCAGAGGGCCGGCGTCTGCTCTCCTCCCCGCAATCGCTGCACGCGGCGGTAATGTCCTCGTTCCCCCATCTGCTGCCCACCGGCACAGGCACCGGCACCGGTAGCGGCGCAGCCGACGGGGCGCGGGTGCTGTGGAGGCTGGATCGCAACGCGACCGCCGAGGTCCTGCTATATGTCGTCAGCCCCGACCGGCCCGACATGACCCACCTCGTGGAACAGGCCGGCTGGCCAGCGGCAGCCACTGCC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 30840-32230 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000057.1 Streptomyces antioxidans strain MUSC 164 57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 30840 29 100.0 32 ............................. GCCCGCGGCTCGGGGAGACACCCGCACGCCAC 30901 29 100.0 32 ............................. GCTGCTGGCCCTCGGCCTTACGACGCAGGTCA 30962 29 100.0 32 ............................. GGTGATCGCGCTCGGCGTCTCGATCTACATCA 31023 29 100.0 32 ............................. AGGGCCTGAGACCGGACCTACCTGCGGAAATA 31084 29 100.0 32 ............................. ATGATCCATAACGCGCGAAAGCCCCATCCGGT 31145 29 100.0 32 ............................. CACGCCCGCGTGGCGGCCGACGCAGCCGCGCG 31206 29 100.0 32 ............................. GAGCCGTCAACCCACTGGGCAGCCAGCAGGCC 31267 29 100.0 32 ............................. CGGTTCCTCCTGGTCGTGATCGACGAGGGTGC 31328 29 100.0 32 ............................. GGCCCGAGCCGTCCGGCCCGGCGACCCTCCTT 31389 29 100.0 32 ............................. GACGTCGCCCCCGCCCACGCCGCGGACCACGA 31450 29 100.0 32 ............................. TCGACCTCGCTCAACGGCAGGGTGGGGTGCAG 31511 29 100.0 32 ............................. TTTGGCTACGTGACCAGTCTCGGACTGAGAGA 31572 29 100.0 32 ............................. TCGCCACGGCGGTAAAGAATCTGGCCGCCCGA 31633 29 100.0 32 ............................. CAGTTGGTTCGCACGCGGGCCCTTGGTGGGTG 31694 29 100.0 32 ............................. GGCACCCGCGCTGAGGTGGGAAGGCAGACCGC 31755 29 100.0 32 ............................. ACGCCGCCGCCATCCCAGGTCATCCCCAGTGC 31816 29 100.0 32 ............................. TGGTACTGGGGGCCGTTTCGAATCGTACTGCC 31877 29 82.8 52 .................A..TT..A..G. CGTGTTCCATAGCCAGACCTGCTCCCCGCTGCGTGGGCACACCGTGTCTCCG 31958 29 100.0 32 ............................. GTGGGCACGTCGACCTCGGCGAGCCGGGTGTC 32019 29 100.0 32 ............................. GTGGGCACGTCGACCTCGGCGAGCCGGGTGTC 32080 29 100.0 32 ............................. ACCGCCAGCTCAAGAGGCAGGGAGTCCACGTC 32141 29 100.0 32 ............................. GGGTAGAGGCCCGCGACCTGGCTGGTGTCCGC 32202 29 96.6 0 ...G......................... | ========== ====== ====== ====== ============================= ==================================================== ================== 23 29 99.1 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGTGCACGCTGGCCGAAACTACGCCGAGGGCGACGGCCCGGACAGCGACAAGGTGTTCTGGTGACCGTCATCGTCTTGACCAACTGCCCGCCCGGCCTTCGCGGCTTCCTCACCCGCTGGCTCCTGGAAATCTCCGCTGGGGTCTTCATCGGCAACCCCTCGGCCCGCGTCCGCGACGCCCTCTGGGACGAGGTTCGCCAATACGCGGGCCAGGGCCGTTCGCTACTCGCCCACACCATCAACAACGAGCAAGGTTTCACCTTCCGCACCCATGACCACGCGTGGCGCCCCATCGATCACGAGGGCCTGCCCCTCATCCGACGCCCCCACTCCAAAGCACAGCAGACCACCGGCGTACCGAAACCGGGCTGGAGTAAGGCATCCCAACGCCGGCGCTTTGGCAGGCGGGCCCAATGATGAGCCAAATGACCGAACTGTCGGAATCAGTAAAAGTATGGGAAACGGGCCTCCCCCCGCGTTGAACCCGCAGGTCACGCAGT # Right flank : CGACAGGGACTCGGGGAAATCCCTTCGTCGCCGTCGGCGAACTCCAGCACGAGCTGACCTATGACGGGACGCGCGCCCGCCGAGGCCAAGGGCGACAAGAGTGGCTGCTCCGCCGTCCTGGTCGGCGTCAGCGGGGATGGTCCCCAGATCGCGCAGGCCTTGCCCGCTTGGTATGGGCTGTCCGGCCAGGTCTCTCAAGCGGATCGCGGACCATGGTCGCGAACACCGAGGAGTTCGAGAAGGGCTGCTGCTTGCTGATGTCCTGGTATCCCCAGGACTCGTATGCCGCCTTCAGCCGTCCGTCGGAGCGAGTGGGATCGACCAAGAGCGTCGCCCGCTTCTCTGCGCGCTCGGCTAGAAGCTTCTCGTGCAGTATGCGGGAGGTGCCTGCCCCCGCTGGGCCCCGCCACCGCTTGCGGACGAGGATCTCGTTGACGGCGAATGTGCGGCTGCCCGTCTCCCGGATGAAGTCCTCTGGTAACGGCTGCCGCATGCTGGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23227-22771 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000134.1 Streptomyces antioxidans strain MUSC 164 134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23226 29 100.0 32 ............................. GCAGAGCGGCTGCGCTGACCCATCTGGGCAGG 23165 29 100.0 32 ............................. CTGAGCCGCCAACCGGAAACGGTTGACCTCCT 23104 29 100.0 32 ............................. AAGGCGAAGAGGAATCGCGAATGCTTTTGCGG 23043 29 100.0 32 ............................. GTAGACCGGGGGAGCGAGACACGGCGCTCGCT 22982 29 100.0 32 ............................. ATCGAGGGTGTCCTGTCGCAGGCCCTGACCCG 22921 29 100.0 32 ............................. TCTGAGGAGACGACCCTCGTGGCCATCAGCGG 22860 29 100.0 32 ............................. CAGCGCGAACACGATCACTTGGGACCACCTCG 22799 29 82.8 0 ......TT................GA.T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Left flank : TGGCCGTCGATACACCACTCCAGCGGACGTGACCGTCTTTGGAGGCGGACTGCCGGGAGGTGTAGC # Right flank : GCCTTCGGTGCGCCAGGTGAGGAACACGCTTCCATATATAGATGACATCCTTGATAGATGTTGTGCGCTGTCGTTCCTCTTATCGCAGTACCCAGGAGGCAAGAGATGTTCCAGGGCACCATCCCGGGCCCGATGCGCGCCATCGTTCGTGAGACCGCCGGAAGGTGGCCGCGCGGAGAGGTCTACGTCCCGTGCTGCGGAAACTTCACGATCGAGCGCAGTGTGGCTGGCATGGGCTTCGCGCTCCACTCCTCGGACGTCTCGATCTACACGACGGCCATCGGCCGGTGGCTCACCCGCCAGCCCGTAGGCATCCGGCTGCGCGAGGAGAGCAGAGACCACCTCGGCTGGCTGGCTTACTCCCTGGATGACGGGGTGGGAACGGTCGCCACACTCATGCTCGGTACCCGCTTCCTCGCCAGTGTGGGCCGCGAAGGACTCTGGCACGAGCGGGTGGTGCGCTCGTACCGGGAGCAATGGGAGGCCAAGCACACGGAGAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.20,-12.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5-2134 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000176.1 Streptomyces antioxidans strain MUSC 164 176, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 5 29 100.0 37 ............................. CGCTGCTGTCGGCGCACGCCACGCCCCGACGACACTC 71 29 100.0 36 ............................. CTACGTCGCCGACCTCCTCACCGCCCACGAGTGCCC 136 29 100.0 36 ............................. GTCAGGGTGCGAGCGCCGTTGCGGGTTGGTTCAAGT 201 29 100.0 36 ............................. CCCCGGCCCCGCCCGCCGCGTACTGGCCCAGGTCAT 266 29 100.0 36 ............................. ATCGGCCAGCTCCAGCAGCGCGTCAGTCGGGGTGCG 331 29 100.0 36 ............................. CACGGCCGGGGCGGCGGGCGGTGTTCTTCAACTGGT 396 29 100.0 35 ............................. CTCATCATCGCCGCCCGCATCGGCTACCAGCTCGC 460 29 100.0 37 ............................. GGGAGAACCCCCAGCCCCAGAAGCCCTCCGGGCACCT 526 29 100.0 36 ............................. GCATGACGCTGGTGCCGTGTGCTCGGCGCGGCTGTT 591 29 100.0 37 ............................. ACGGCCTTGCGGGGCTGGTATCGCTTGCACTGGATGA 657 29 100.0 36 ............................. CCTCGGTCCGGCGGACCCACACCTGGCCGAGTTCGG 722 29 100.0 40 ............................. CTCCCTCGGGATCGGAACGCCCCGCTGCTCGGCGTCACGA 791 29 100.0 36 ............................. CTCACCATCGCCGCCCGGTTCGGCGTGGAGGCCCGC 856 29 100.0 36 ............................. CTGCTGCACGAGGCAGCCCACGCGTTGGCCCATGTT 921 29 100.0 36 ............................. GCGGGTGACGAACTCCCGTCGGCGGCGGGCGCCGGT 986 29 100.0 36 ............................. CCGGCTCTGCCGCCGGGAGGATGACACAGGGCTTGT 1051 29 100.0 38 ............................. ACGGACGCGGGTTGCGTCCGCTGGGATGTTGCTGACGT 1118 29 100.0 36 ............................. GCATGACGCTGGTGCCGTGTGCTCGGCGCGGCTGTT 1183 29 100.0 37 ............................. GCGCCGCCCTCACCCTCGCCCTCTACCTCCTGGCCCG 1249 29 100.0 37 ............................. CCGAGGTTGGTGGTGTGAGTGGCGTCGGGCCGGAACC 1315 29 100.0 36 ............................. GGAGCAGGGCTACAACCCCGCCCGTCACATCAAGGG 1380 29 100.0 36 ............................. CCGCGACCCGTGCCCTGTGCTCCCAGTTGATCGCCT 1445 29 100.0 38 ............................. GGGAGCACGTCGCGGCCCCCACACCAGCCCCCACTCGG 1512 29 100.0 36 ............................. CCGCGCGGGCCAGCTCGGCGCCGGGCGCCCAGCGCT 1577 29 100.0 38 ............................. GTGGATACGCAGGGCGAGACGGTCGCGGTGCAGGACGT 1644 29 100.0 42 ............................. CTGGGAGGGCCAGCCGTCCCTTGTAGGGCGGCCAGCCTCGTT 1715 29 100.0 39 ............................. CGGCCTCCGGTCGCGCTCAGAACAGGGCGGTGATCCGGT 1783 29 100.0 36 ............................. CTCGGCCCTGCTGGACGCAGTGGACAGCGCGTTCGT 1848 29 100.0 36 ............................. GCCCGCCCGGCGCAGCCGGGCCCACGGGCCGCGAAG 1913 29 100.0 35 ............................. CTCGGAGACGTACAGCGCCGGCCGATGACGTACGC 1977 29 100.0 35 ............................. CCTCATGGCCTACGCGGCATCCGTGGCCGCGCCAC 2041 29 100.0 36 ............................. CCGCGCCACGGCCCGCATGGCGATGGCCGAGCAGTA 2106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 33 29 100.0 37 GTTGCGAGCCCTCCAGGGCTGATGAGGAC # Left flank : TCCCG # Right flank : CCCGACGGTAAAGTCGCAGGTCAGAGAGAGAAACCATCGCATCTGTGAGTGTCGTTTTGCAGCGATCCGGCGGTAGTGCATCTGTGCAGGTCAGCGCGGTTTACAGGATGTCGCCGGGGCCGCCCAGGGTGATTCCGAGGGTACTGGACTCGATCATGTCCGGGGACCTGGCTGTGTAGGTCACGATGCTGTCGTACTCGGGGTCGATGGTGGTGTTCAACGTGGTCATGAGGGCGCGGTACTGGGCAGTGGAGAGTTCGCCCTGGAAGACGCTGCGTTGTGTCCAGTGGAGGTACTTGCGGCAGGTCTTGAGCACCTTGGGGTTGCGTTCGACGGCGGTGTCGTAGACGAGGATCACGAAGATGCTGATCACCACCAGGGGCGGAAGGGCTTGTACGGCTTGTCTTCGAGGCACAGGCGGACGATCTTGAGGGCTTCGAGGTGGATGAGTTCCTCGTAGCTGACTTTGCGTTTGAGTGTGCGGTGGTAGACGGTCGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAGCCCTCCAGGGCTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 11510-10627 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAKD02000176.1 Streptomyces antioxidans strain MUSC 164 176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 11509 29 100.0 38 ............................. CTCGAAGTGGCCCACCCCCGCAGCGGATCCGTCCACTT 11442 29 100.0 37 ............................. CCTCACCAGGCCAGCAGGCGGGAACGGGCCCTCGATG 11376 29 100.0 36 ............................. GTCAGGGTGCGAGCGCCGTTGCGGGTTGGTTCAAGT 11311 29 100.0 37 ............................. AGGACGCCGGGATGGGCGACACCGCCTCGTACACCGC 11245 29 100.0 36 ............................. CGGGGGTGCCGTCGGGGCGGTAGCGCTCGGGGTTGT 11180 29 96.6 37 .............T............... CGTAGGAAGACAAGCGGCCTCCGCTCTGGACATCGAG 11114 29 100.0 35 ............................. GGTGCCCGGCCTGCCGGTCCTTGCCGCGCGAGGAC 11050 29 100.0 35 ............................. CAGCCCATCGCCATCGCTGTCTGGATCCAGATCGG 10986 29 93.1 37 ..................G......C... TGGCGATCGTGTGCCACCGCCCCCACGACCACATGGT 10920 29 89.7 41 .......C..........G......C... ACGGGCGGCGGCGTCGCTCCACTGGGCCAGGACCAGACGCG 10850 29 89.7 34 .......C..........G......C... CGGCCATGACTCCCACACGGCCGCACCGCAGCAG 10787 29 89.7 37 .......C..........G......C... GGGACACATGGTCCGATGGTTCAACCGGAAGGCGCTG 10721 29 89.7 37 .......C..........G......C... CGGCGACAGTGACCCTGTCGGATCACACCGGGTCGGT 10655 29 89.7 0 .......C..........G......C... | ========== ====== ====== ====== ============================= ========================================= ================== 14 29 95.6 37 GTTGCGAGCCCTCCAGGGCTGATGAGGAC # Left flank : TCC # Right flank : CGAGGGTAAAGCCACAGGCCGGATCGATCTTCCTGCGGCGTTCCGGGGCGGATTTTGCAGCGACCCGGCAGTAGTGCATCAGAGCAGGTCAGAGCGTTGAGTCTTGGGAGTACAACATGCCGTGTGGGATTGCTGTCAGTGGTGCCCGTTAGTTTGCGGGTTCGGTTCCACTCGCGGCAACACGCCGGTGGAGCTTTGACGAGTGCGATGTATAGCACCGACAAAGGCATTTCAAGATACTTTGTAAGTTTTCACACCTTACCTCCCTTTGCTCGGCTAGGGTCCTTTCCTGTCCGGGCTGGTCGCTGTGTCAGCAGAGCGGCAGGGTCGTTGGCGGAGTCGTTGGGGGTGTGATGCGGATCAGGGTGGACGTCGAGCCGGATCGGCCGAGTCTGCGGTGGGAGGAGGTGCATGGGCCAGCGCGCTCAGTGATGTACGAGTTGCTCGGCAGCCACGATGCCGCGATGGCTCAGTCACTGCATGACGAAGGGTGGAGGGGC # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAGCCCTCCAGGGCTGATGAGGAC # Alternate repeat : GTTGCGACCCCTCCAGGGGTGATGACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //