Array 1 45240-42111 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABDU01000047.2 Clostridium perfringens C str. JGS1495 gcontig_1106166512781, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45239 36 86.1 26 A...ACA...A......................... CAGCTGAAGAAAAAGAGCCATAAGGC A,A [45225,45231] 45175 35 91.7 31 TG........-......................... TTAGTTGAAGTTCTTATACCATCTACAACAT 45109 36 97.2 30 .........T.......................... TAGTGAATACGAGGTATCATACCCAAGCTA 45043 36 100.0 30 .................................... TCTAAGTTGTTGAACCCGTTAAGTTCTCTG C [45034] 44976 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 44910 36 100.0 30 .................................... CAACATAGTTGGTAAATCTAACTCAGTTAT 44844 36 100.0 30 .................................... TCAATGGGCTAAGGATGAATACGAAGAATA 44778 36 100.0 30 .................................... TCTCTATTCTTTTTTAAGTAAAGATTGCTT 44712 36 100.0 30 .................................... ACATCAAGTGGTGTATCCTCAAATCCACCT 44646 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 44580 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 44515 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 44449 36 100.0 30 .................................... TTACTCTTAGTCGCTGATCGTTCATTCACC 44383 36 100.0 31 .................................... AGTTTACACATAATACTTACAACTAATCCAG 44316 36 100.0 30 .................................... GACCTTTCTAAAGGTTTTATAACAGTTAAC 44250 36 100.0 30 .................................... TGATGACGATGTATATGCTTATCCAGATAC 44184 36 100.0 30 .................................... TGGTATGAGTAGAAGTGATTTACTATTACA 44118 36 100.0 30 .................................... TAATTTTGATATTGATTCATTATCAGAAAA 44052 36 100.0 30 .................................... CTATTGCTAAAGCTATTGCAGAAGGTTTAT 43986 36 100.0 29 .................................... GGAAAAATAAAAGCCCCCTAGTAAAATAA 43921 36 100.0 30 .................................... TTAGGAGGTTTTTTATATGGAAAACAATTT 43855 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 43789 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 43723 36 100.0 30 .................................... CACCAAAGGTATATTGAGAGAAAGATAAGG 43657 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 43591 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 43525 36 100.0 29 .................................... ATATATACCAAGCATTGATGCATGTTGGT 43460 36 100.0 30 .................................... ACACTTGCTATAGTTGGTTTAATACCACCA 43394 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 43328 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 43263 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 43197 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 43131 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 43065 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 43000 36 100.0 29 .................................... TGTTAGGATCTGCAACCTTCACTTCTACA 42935 36 100.0 30 .................................... CTTTCCCAAGTGCTTTTCCCCTTGTTATAT 42869 36 100.0 30 .................................... TTTCTTTGACTTAATAGACTTAGAGTTTTT 42803 36 100.0 30 .................................... TGAAGGACAGACTTCTAAATAGTCCGCTAT 42737 36 100.0 30 .................................... GCAGTATGCTAAGTGGTTTCCTATCAGTTG 42671 36 100.0 29 .................................... CAACTCCGTTTTTCTCTTCAAAACTAAAT 42606 36 100.0 30 .................................... AGAAAAACATAAGCTTAAACAACCCCTAGA 42540 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 42475 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 42409 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 42344 36 100.0 30 .................................... TTAGGAGGTTTTTTATATGGAAAACAATTT 42278 36 100.0 30 .................................... TTCATAATAAATAGTTGTTGGGTTGGCTTT 42212 36 100.0 30 .................................... TAAGGAGCAAAATAATTTATTAAAGCAGCT 42146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.5 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //