Array 1 26677-26159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANW010000002.1 Corynebacterium ulcerans strain 4724 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26676 29 100.0 32 ............................. CTTCAATGTCAGGCTGGTGATGCGTGATCTTT 26615 29 100.0 32 ............................. CGCTTGGCCCTATGCCTTTGAAAGAAGCTGAT 26554 29 100.0 32 ............................. GTTTACGGCGGTAAGGTCATTCGCCCTGAGGG 26493 29 100.0 32 ............................. ATGTGCGAGGAATTCGTAGCCGAATTTCATTG 26432 29 100.0 32 ............................. AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT 26371 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 26310 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 26249 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 26188 29 82.8 0 ....................A...AGC.T | A [26162] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : ACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 598165-598710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANW010000001.1 Corynebacterium ulcerans strain 4724 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 598165 36 100.0 36 .................................... ACGATGATCGCCAATGACATCTTGCGCCGCCCCGAT 598237 36 100.0 37 .................................... TTAGTCGACGCGGAGTGAACATCCGGGGTCTTTTCAA 598310 36 100.0 38 .................................... GCTAGGCGGGTTTCGATGCTTTCAAGATCATCAACGGC 598384 36 100.0 37 .................................... GCCAATAGCCATAAGGGGAAAAACCGGAATCGGCAAT 598457 36 100.0 37 .................................... TCACTGACCTTGATATGTAGGGTGACTGTGCGCTGTC 598530 36 100.0 36 .................................... TCTTTCCCAGAGTTTCTGCCATAGATGCGGATATCC 598602 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 598675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TAAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 677615-679780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEANW010000001.1 Corynebacterium ulcerans strain 4724 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 677615 29 100.0 32 ............................. TTTCTGATTCTGAGAAGAAGCTCGGGGAAAAT 677676 29 100.0 32 ............................. ATGGCGCTGCTTAAACGCTCATAGTGATCTGA 677737 29 100.0 32 ............................. GATCTTGCCGATAGCGCCACCGATGCCACCGA 677798 29 100.0 32 ............................. AAAGGTGATTACTTCAACTTCCGTGTTGAGGA 677859 29 100.0 32 ............................. GATCTTGCCGATAGCGCCACCGATGCCACCGA 677920 29 100.0 32 ............................. GACGGAGCAGCTGAAGGAACGCGATGTTCTTA 677981 29 100.0 32 ............................. ACAGACACTAGTGACGACGATGATGACAGTGG 678042 29 100.0 32 ............................. CTATTTGGAGGAGGCTGGGCTACTGCACGGCT 678103 29 100.0 32 ............................. AGTTTGAGTGGTTGAAGGAAAACGCGGCGAGT 678164 29 100.0 32 ............................. CAGATTCTGACTTGGGGCGCACCAGGCCCACA 678225 29 100.0 32 ............................. CGCAGAAGTTCTTCCCTCGATCCGGAGACACG 678286 29 100.0 32 ............................. TGATGCCAATGCTCCTTAAAAGACGCAGTTTC 678347 29 96.6 32 ............................A TAAACCGATCGTGATACTCAACCTTCGGGGCG 678408 29 100.0 32 ............................. GCATACAATTAACCCCCACCTCGTTAGAGGCA 678469 29 100.0 32 ............................. ATTTGCGAGCGATGGCTGGAATCCACCACACG 678530 29 100.0 32 ............................. GGGCAAATGCGTCAAACCCTATACGTGAAGGT 678591 29 100.0 33 ............................. AAAGTCAACGGTGGGAGCGCAAGGTTCCTTGAC 678653 29 100.0 32 ............................. GCAGTCAATGAAGGGCTACGTCAAGAAGCGCC 678714 29 100.0 32 ............................. TACATCTTGAGCCTCTGGAACAAAGTCAACGG 678775 29 100.0 32 ............................. AACTCACCCACCACGAATCCATCAACGAAATC 678836 29 100.0 32 ............................. GTGAGCTTGCGAAAGCTCGTGAGGATGCCCCA 678897 29 100.0 32 ............................. GATTCGAGCGAAGAGAAAGAGGAGGAAAAATG 678958 29 96.6 32 ............................T GAAAATGATTGCAATTTGCAATCTTAAGGGCG 679019 29 100.0 33 ............................. GCGGAGGCTGTCGAGGGTTCCCTCGCGGGTTTC 679081 29 100.0 32 ............................. GGTGGCGAGCAGGTAAACTCACCACACTCGCG 679142 29 100.0 32 ............................. GATTTATTTGGTGAGGGAGTGATGCGCAGTGA 679203 29 100.0 32 ............................. ATCCTGCGCTCACGAATTGGAACTGGTGGCAT 679264 29 100.0 32 ............................. GGCGATAGCCGCCGCATTCTCCTCAATCTTCT 679325 29 100.0 32 ............................. CGAATCCGGCCCATAGAGGCGACCCGCTATTT 679386 29 100.0 32 ............................. AATTTTGATGTGATTTTGCCCCTGACCGCTGC 679447 29 100.0 32 ............................. TGGCCCTCAGTCGGATTCGATTACGTGGGCTG 679508 29 100.0 32 ............................. AAGTCGAGGGCGTGATTAATGAATTTTTGCGC 679569 29 100.0 32 ............................. GCAATAACCCCAACGCCAGGAATCGATCAAGA 679630 29 100.0 32 ............................. CAAAGGGGGCTATCTTTTATGCTTTTAACAAG 679691 29 96.6 32 ........................A.... CTTGGAAAATCCCTCAGCTGCGTTTTCTTTCA 679752 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.7 32 CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATCCTCACTCCACATCTTCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCCTTTCCGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTCATGGAAAACCTTTGGGAAAAATGCCAATCCATAGACCTAGCAGGATCCCTTACTCTGATTCACCCGCAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATATTGATGGCCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCAGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : CGTGCTGGGGCTACCATGCAAAAGATCCTTGATTTGGGAAAGTCTCAGTCCTTCCTCACATCTTCTTTTTCCTTAAGCACCAAAGGAGTTCCTGCTATATTGGCGGCTTCCAAGAACTCTGACAAAAACGGATTTGAACAACCAGAAACGAGCACTGATGGACATGATGAATCCCACTGAACGCATTAGCGAAGACCAATTACGACAGATTCGCAATGATCTAGCAAGCGCAGAAATCGAAGGGCAACCAAGAACTCCAGAAGATGAAAAAATCCTTGCCGCTTATTATCTTGGTGAAATTAGCGAACAAGAATCTTTTGAATCGCTTTTGAAAGCTGCAGGAGTCCACCCACCTTACCCATCAATAAATCATGACCTCGATTAATCGTGATTTGGAAAACGTCGCTGGGATGAGCTGCCTTATCCTGGGGATGCAAGTCTCGAAAATTTGTATGGTATCCGTGATGAAGTCTTAGCAGAAAAAGTTATTCGCGCTGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //