Array 1 14933-15997 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEX01000130.1 Rhodoplanes roseus strain DSM 5909 NODE_130_length_16020_cov_36.3451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14933 29 100.0 32 ............................. ACCGAGCCGTCCTCGTAGACCTTGCGGGTCTG 14994 29 100.0 32 ............................. ATGCGGGTGACTTCCGTCTGACGGATGGTGGG 15055 29 100.0 32 ............................. GTGGATGCGGCCCGTGCGGCCTCCCAGCCTTC 15116 29 100.0 32 ............................. CCCCCTCAGCAGATGCCCGACCCCAAGGTGAT 15177 29 100.0 32 ............................. CGGATGATGCGGGCCGACGCCGAGCGCCACGC 15238 29 100.0 32 ............................. GCGTTGGCCAAGACGGCCGACACGCTGGTGCT 15299 29 100.0 32 ............................. CCGAACGGCAGCAGCACCTCGACGCCGGTGCG 15360 29 100.0 32 ............................. CCGCCGCCACGGGACAGGAGGGCTGACCATGG 15421 29 100.0 32 ............................. GTGTTCTACACCAGCAGCAGCGGGGTCCAGAC 15482 29 100.0 32 ............................. GTCATCGGTCTATCCTCCGCCCCTGAGATGCC 15543 29 100.0 32 ............................. GCCCGCATCGGCGCCCGGCCGACCACGGCCCG 15604 28 93.1 32 .........G..-................ GGTCAGCTCAATCACGCCGCGTTGCTGATCGA 15664 29 100.0 32 ............................. CATCACAGCTCTGACCTCCCGGGTCGGGACCG 15725 29 100.0 32 ............................. GCATTCGATGCGCTCGATCCGGGCCTGCGGCG 15786 29 100.0 32 ............................. CCATGTCCGACCCCATCCCGATGCGCGCCGAA 15847 29 100.0 32 ............................. AGCTGCGCGCCACGCCCGGCGACTGGGGCTTC 15908 29 100.0 32 ............................. CTGCTCGAGATGAGCGTGCAGAACCTCGTCGG 15969 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GCATTCCCCACGCCCGTGGGGATGAACCG # Left flank : CTTCGATCGAGGAGGTGCTGTCGGCGGGTGGCTTGCCGATGCCCGAACCTTCAGAAGAAGCGATGCCCCCGGCCTTCAGCGACGGGGAGCCCTCCGGGGATGCTGGTCATCGTGGTTGAGAATGCCCCGGATCGGCTCCGGGGGCGGCTTGCGGTTTGGCTGCTCGAGGTTCGTGCGGGCGTCTATGTCGGCGTGTTCTCTCGACGGACCCGCGAGCGGATTTGGAAGCTGGTTCAGGCCTCGATCGGGGATGGCAACGCAGTGATCGCCTGGAGCGCGCCGACGGACGCCGGATTCGAGTTCGACACGGTCGGGACGAACAGGCGCGAGCCGGTCGACTTCGACGGCTTCAAGCTCGTGAAGTTCCTGCCGTTGGCCTCGAGATCTCCTGGCTGACCTCGAGAGAGGTCACTGCCGTGCCGGACGCAAGAAGAACCGGAATCGCCGGTGCGCTGTTTGACATCGTGAGAATCATGTTCTCTCAATAGCTTGCAGGAAGA # Right flank : TCGCCCGCATCTTGCGGGCGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22643-20306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEX01000083.1 Rhodoplanes roseus strain DSM 5909 NODE_83_length_22674_cov_33.8143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 22642 29 100.0 32 ............................. GCGGATCACGCCGCCATCCAGGAGCTTGGCCA 22581 29 100.0 32 ............................. GCAGAAGAGGATCAGCGCAAACGACCAGGGCG 22520 29 100.0 32 ............................. ATCAGGCACTACCGCGTGGTGCGGGGGCGCGG 22459 29 100.0 32 ............................. ATGCCGGCGGTGTCGATCAGCGGCGCCACCAT 22398 29 100.0 32 ............................. CTTCGATCGGACAACCCCCTCCGTCCCGAACT 22337 29 100.0 32 ............................. CCCTTGTTGAACGCGGCGGCGCTGTAGCCCGA 22276 29 100.0 32 ............................. GACTACGTCTCGTTCGCCGTGTCCGCCGGCCA 22215 29 100.0 32 ............................. AACCGCGACGGGTCGCAGTCCACCGTGACGCG 22154 29 96.6 32 ............G................ TTCATGCGGGCCGGCGGCGGGGGTAACCACGG 22093 29 100.0 32 ............................. GTGCTGGCCGGTCTGGTCCGGCGTCGCAACGC 22032 29 93.1 32 ...C........................C TCCCCGGCGGCATCTCCGCCGGCACCGCCCCC 21971 29 100.0 32 ............................. GTGAACGAGCTCGGTGAGATCGCCCTCGCCGG 21910 29 96.6 32 ............................T CTTGAAGAAGCGCCCCGGCATCTCGCAGCCCT 21849 29 100.0 32 ............................. ATCCTGCTCGCCCTGGCCGGCCATATCACGAA C [21834] 21787 29 96.6 32 ...............C............. CAGGCGACCGAGTGGCACCAGGTCGTGATCTT 21726 29 100.0 32 ............................. CAGCCGGCCCGCTCGTGGGAAGGCCTGTCTGA 21665 29 96.6 32 .....................G....... GCCTACGGCAACGTTCGGCTGAACTACGGGGA 21604 28 96.6 32 ....................-........ GTCCGATCGTTCGGGGTCAACGTCCCGGCCGT 21544 29 100.0 32 ............................. ATCATTCGCCGGCTGCGCCGAAGGGCCTGGTT 21483 29 100.0 32 ............................. ATCAAGGAGATCAGCCGCCCGTTTTTCTCGGC 21422 29 100.0 84 ............................. ATCGGATAGAACGACGGCACCGGGACGGCTGCGCATTCCTGGGGATGAACCGGTCGGGCACGGCCCGCCCTTCACCTGGGAAGA 21309 29 100.0 32 ............................. ACGATCCGGCGCGGCATCATTCGCCCGCTCAA 21248 29 100.0 32 ............................. GCGAACCTGATCAAGCCGCTCGACGAGCCCGA 21187 29 100.0 32 ............................. ATTGATTGGGACGAGCCGCTGCAGTGGGTGAG 21126 29 100.0 32 ............................. GTGACCTTCAATCAGCCGGCGCCGATGGGCGG 21065 29 100.0 32 ............................. GGCGTCAACCTGATCATCTGGTCGGGGCTGCG 21004 29 96.6 32 .............G............... TATCTGGTCGTGGTGTCGTCCTATCCGAATGT 20943 29 96.6 32 .............G............... GTCCGCGACGCACTGTCCGTCCACATGCCCGA 20882 29 100.0 32 ............................. GGCCGCGAGTGGGGCCCCGTCGCGGTGACGAT 20821 29 89.7 32 ..........G.......C.......T.. ACCCGCACCGTCGTCGCCAGGGAGCTCGTCAA 20760 29 100.0 32 ............................. CTCACGGCGGGAGCGCATCGCCTCGCCGCTGC 20699 29 93.1 32 .T.......................G... ACGCGACAGCAGGTGTGCCTGGAGCGCACCGG 20638 29 86.2 32 ..G..........A..C........G... ACGGTCGAACGCAAGCTCGCCGATCGGTCGTT 20577 29 82.8 33 ..G..........AG.C........G... ATCATGCGGACGACGGTCGCCCGGTCCCACGCC 20515 29 79.3 32 ..G....G.....A..C......A.G... CCGACGAGGACACGCTAGCCGAACTGTGCCGT 20454 29 79.3 32 ..G..........A..CA.......G..C TCCATGCGGCCGACGGCGTCGCCGAGCTCCTG 20393 29 86.2 30 ..G..........A..C........G... CGGCTCTACGGGTTCGCGGGCCGGCCCGGC 20334 29 82.8 0 ..G........T.A..G........G... | ========== ====== ====== ====== ============================= ==================================================================================== ================== 38 29 96.0 33 GCATTCCCCACGCCCGTGGGGATGAACCG # Left flank : TCGCCCGCATCTTGCGGGCGGCCCGGCAGGT # Right flank : CACCGGGCCATGATGGCGGCGCGACAGATCAGGCGTTCCTCACCCGGCCCGACGGCAGCGGCCGTGCTCTCGTGGAGGTGCCAACGCGGCGGGGCGCCGCGTGATCACTGGGCGTCGGTGACCCTTCAGCCGATCCGGGACACGCGCTATTCGATGTCCTAGAAAAGACACTCGTGTTGCACCCCTGTGCGTCGGGTGTGCCGGCGCGGGATTTCATGCTGAACCTTGGAACCAAGCTCTCGTCGGTGGAGCTCGTCCTTCGAGGAAAGTTTGAGGTTCTGAGTTGATCGAGTGCGTTCTACTCGGATTTGGTGTGCTTCTGCACGGAAAAGCGGCGATCTCACGCTCCGACCACCCCGGAATATTGCCCTGAACCGACTTTGTCCGAAATCTGCTGCCGGAGAGCTCACTAAAAGGCTTTTGAAGATCGTCCACGTCCTGTCGAAGATGGGTGCGGGAACGGCGGAAAATATTGATTGCGAATCAACGGGCCGAAATCT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //