Array 1 94630-93076 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTP01000035.1 Escherichia coli strain JML231 sequence35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94629 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 94568 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 94507 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 94446 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 94385 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 94324 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 94263 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 94202 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 94141 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 94080 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 94019 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 93958 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 93897 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 93836 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 93775 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 93714 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 93653 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 93592 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 93531 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 93470 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 93409 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 93348 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 93287 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 93226 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 93165 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 93104 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 97.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121700-120329 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFTP01000035.1 Escherichia coli strain JML231 sequence35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121699 29 100.0 32 ............................. CTATTTCTGCTGAATCATCGGTTGAAATTGCA 121638 29 100.0 32 ............................. CGAAATCCTGACTGGCAAATAAAACTGGGTGC 121577 29 100.0 32 ............................. GCAACAGACAGCCAGATAAAGCAATTAGAAAC 121516 29 100.0 32 ............................. GCTACGAGATAAAAGAGGATTTAGATTTACGT 121455 29 100.0 32 ............................. AATGTTCTCATGAAAGGCGACCTGACACCGGA 121394 29 100.0 32 ............................. TATTATCATCACGAAAAAATAGAGTTCTTTTG 121333 29 100.0 32 ............................. GGAGGAATTTATACAATCGAGCTGTTGCCGGT 121272 29 100.0 32 ............................. AAAATAAATATCCTGAGCTAACACGCGCTATA 121211 29 96.6 32 ...........A................. CCGGAATTTGCCACCGTGGGACGTCGTGAAAC 121150 29 100.0 32 ............................. TAATACAAAACTGTATTCATCCCGTTTAGTCA 121089 29 100.0 32 ............................. GCGACGACGATCCCGACGCTGCAAAAGGTTCG 121028 29 100.0 32 ............................. AGAATTTGCCAGGTGTAATTGCTGGACGTTTA 120967 29 100.0 32 ............................. CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 120906 29 100.0 32 ............................. TCCAGAGGTAGCGTTTATCGCGCGTTTACACT 120845 29 96.6 32 ............................T CGCGTCGAACGCCGTGCAGCTGCACCAGGATC 120784 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 120723 29 100.0 32 ............................. CAGCGCGAACGGCTGCCCCTCGCCTTTAATCC 120662 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120601 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120540 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 120479 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 120418 29 96.6 32 .A........................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 120357 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGCGAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTAAATCTATTATTTTTTTAATATTGAATTAATGTCTGTTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAACGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAGAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //