Array 1 260-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKM01000003.1 Bifidobacterium adolescentis DSM 20087 T509DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 259 36 100.0 35 .................................... GCTTTCATGTCACCGGCAAGAGTGCATTCCGTACC 188 36 100.0 35 .................................... GGCTCCGGATGCAGTACGGTGCCGTCCTCCGTGGA 117 36 97.2 35 ..................A................. CAGTTCAGTTTTTGTTCTTTGCCGTCCTCCGTGGA 46 36 97.2 0 ..................A................. | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 98.6 35 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : AGATTTGGTGGTGACGCCGTACACGTTTATTTGACCATAAACACCTGGATCTGAACATGCGGTAGCCGCGCGGCGTGATGAACCCGCAGTCCAGCGAAGCGGCCAGCACCCTGCGGATCGGCCCGACCCTGAAACGGTCCTTGAATTCGTCGATGTAAGCGACCGTCAACGCCGTGTCGGGTCGAGCCGCGCCGCGAAAAAAGCCGACGCCGTCGTCAATATCTCGTTCGCCCGCCTCAATCGCGCGACCTCGGCCCGCAGACTCCTCAACTCCGCCATCGCGTCTTCGGCCGACTGCTTGGTCTCCGGCGCGACCCCCAGATCCTTGGCGACCTGTTCGATCGCCTTGGTCTCCGACGAATACGAGCCGCGCGACTCGGTCAACAGCCTGACGGCCTTCGCCTTGAACTCCGGCGTGTATCTCGTTCCTTTTGCCATGGTTCCATCATCTCCCATCGAGTTAGGGGAAATGCGGAACAAAAATCAGTTCATATCAGAAA # Right flank : TCAGTTCAGCG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : ACCTCAATGAAGTCCTAAACGTAAAAGCTTAGGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 4621-4073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNKM01000003.1 Bifidobacterium adolescentis DSM 20087 T509DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4620 36 88.9 35 ...........A...C...T......A......... CTTTGGTTCGGCACTTCGCTTGGCATGTCGCCGGG 4549 36 100.0 38 .................................... GCCTCACCATACGCGCCATAAAGCCACGGCTCCGCCTG 4475 36 100.0 37 .................................... CGGTGTACTCGTCCAGCAGCAAGACCCGTTCCTCCTC 4402 36 100.0 36 .................................... GATCTCGACTCCCAGGTTGAGGGTCATTTTCGCTCC 4330 36 100.0 38 .................................... GGGGAACAGTGGACCGCGCGCGAAGCCTACATCATCCG 4256 36 100.0 38 .................................... CCCACACCATGAGCCTCCTATTGCCAGCCGATCCGTTG 4182 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 4108 36 83.3 0 C..........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 96.5 37 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : GACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCGGATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTGCTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGCAAAGAGCAGGGCGAACAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCCAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACCGGCGCAGACGCTTCGAGTTCCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCCTCAAATCCCGGAAGGGCTTGCGTCGCCAGACGAGCTCGGTCTTGTACGCGCCGTCGGCGCTCTCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGCCGAGGGAAGCATGCCGAATTCCCCGACCCTGGTGGCGTACACGAGGCCGATGTACTGCGCGCCATGGTCGGAATGGTGCGCGAGACCGTCCGTGCCGCCATGCGGGGCGGCCCATGACATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCTGGTGTCCATGGTGGTGGCGCACGCCCATCCGACGATCCTGCGGGCGAACACGTCGGCGGCGAACGCCGTGTGGCCGAACGAGCCGTTG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //