Array 1 83120-88001 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRJB01000001.1 Bifidobacterium pseudocatenulatum strain AM20-1 AM20-1.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 83120 33 100.0 36 ................................. AAAGCAAGCCTGTTGAAACGTTCCATTACCGATAGC 83189 33 100.0 33 ................................. CTAATCAAGTCTTTTGCAACATTTGCCGTAAGA 83255 33 100.0 34 ................................. AACGCGCCGGACGGCATCACCGTTGCAGTCAAGC 83322 33 100.0 33 ................................. AATTAGGCTGATGCCGCCTACGGTGCAGATGAA 83388 33 100.0 34 ................................. GCCGCTTACACGCTTGTGGCGGACAGTCTGCTCG 83455 33 100.0 37 ................................. ATCGACAACATGAAAGAGCGCGGATACAGCATATCCG 83525 33 100.0 37 ................................. AAAACATACTGCAACAGGTGGCCGGACGGCACCGCCG 83595 33 100.0 34 ................................. GAGCAATTGGCGAAACTTGTGGATACCGTCACGC 83662 33 100.0 34 ................................. TCAGATGATACTGCACGCGACACATGGTTTGACA 83729 33 100.0 34 ................................. CGATATCCACCGGTCGAACTGCCTTCGTGAACGG 83796 33 100.0 35 ................................. TCCGACTTCACGTCCACCAGCTGCCCGGCCAGCCT 83864 33 100.0 33 ................................. TGCCAGGGCATCGAGGAATCATGCGAGGACGCG 83930 33 100.0 34 ................................. GAGGTTGAGGACTGCGGCGGTACCACTCGTTACG 83997 33 100.0 35 ................................. TCGAATATAATTTATTGTATTTCGGTTACGCCACA 84065 33 100.0 39 ................................. GTCCCATACTTTTTCCACCTTATAGATTGTCGTGTACGA 84137 33 100.0 34 ................................. GATTACAATGTTTGGACGCCAAACACGGCAATCA 84204 33 100.0 35 ................................. TATGACAGGGAATTAGGCGTGATGCCACCGTCAAG 84272 33 100.0 35 ................................. TTCTTGTACTTTTAGTTGATGGATTACGCGGTCTA 84340 33 100.0 33 ................................. ACATGCTCCCGAATCGCTTGTAGAATTCGTCGT 84406 33 100.0 33 ................................. CGGCAGTGCAAGAAAACGGAACGGCATCTCGCG 84472 33 100.0 35 ................................. ATCGGCGCTATCGTCATCGAGCACCGGTTGGAACA 84540 33 100.0 35 ................................. TACATCCGCCTCCATGAGGACGGCAGCGCCAGCCT 84608 33 100.0 33 ................................. AAGGACGGCGGACACTACTTCCTCGTGCTGAAC 84674 33 100.0 34 ................................. CAGCAGAGCCGTTTCGCCACGGCCTCAATCTCAA 84741 33 100.0 33 ................................. GCCGTAATGGTGTTGTACGAATGCGAGCCATGC 84807 33 97.0 33 ............C.................... GCCGTAATGGTGTTGTACGAATGCGAGCCATGC 84873 33 100.0 36 ................................. GCGATGTAACACAACGCGGAACCCACCATGATGACC 84942 33 100.0 35 ................................. CACATGCCCCGAAGAATATCGCCTGACCGTCAAGG 85010 33 100.0 35 ................................. CAAGTACGTCACAACTCGCAAGTCTGTTGCATTGC 85078 33 100.0 33 ................................. GACGTAATGGTGTTGTACGAATGCGAGCCATGC 85144 33 100.0 36 ................................. GCGATGTAACACAACGCGGAACCCACCATGATGACC 85213 33 100.0 35 ................................. CACATGCCCCGAAGAATATCGCCTGACCGTCAAGG 85281 33 100.0 35 ................................. CAAGTACGTCACAACTCGCAAGTCTGTTGCATTGC 85349 33 100.0 33 ................................. GACGTAATGGTGTTGTACGAATGCGAGCCATGC 85415 33 100.0 36 ................................. GCGATGTAACACAACGCGGAACCCACCATGATGACC 85484 33 100.0 35 ................................. CACATGCCCCGAAGAATATCGCCTGACCGTCAAGG 85552 33 100.0 35 ................................. CAAGTACGTCACAACTCGCAAGTCTGTTGCATTGC 85620 33 100.0 35 ................................. AACAAAACCATCCGCGACGCCATGACCCTCGACGG 85688 33 100.0 34 ................................. ATCCTGTTGTTGAAACTTAGGTTTTTCAGGGTTA 85755 33 100.0 35 ................................. AGCGTTTGATCGGCTTGTACATCCAGCATGCCGAG 85823 33 100.0 34 ................................. TTGCCGGTGTCGGAATCGGTGGAATCCGTCGTAT 85890 33 100.0 33 ................................. GCGCTCCCGGCTGGGCGGAGAACGTGAAGGTCG 85956 33 100.0 35 ................................. GATCAGACTAATGCCGCCTACGGTGCAAACGAACA 86024 33 100.0 32 ................................. ATGCCCTGCGACCCGTTGGAGATCGTCACCGA 86089 33 100.0 33 ................................. ATGCTTTGACGAGATACCAGGTTGACTTGTCCG 86155 33 100.0 35 ................................. TTTGACGTACCATGTTTTTTCGTCAACGTGATTGG 86223 33 100.0 32 ................................. CTCGGACAAGGGTAATAGCATGTCGCATACGC 86288 33 100.0 34 ................................. AACATGATATTCAGCTGGGTAACGCCTATGTCGA 86355 33 100.0 34 ................................. ATTTATCTACGCCGTACCGACGTGGAACAGCACC 86422 33 100.0 35 ................................. ATGTTAGTCAAGGAGGGTATGTACGAGCACGCTAT 86490 33 100.0 35 ................................. AAACGGTCGAAATACTCTTTTTGAGACTGTCTATC 86558 33 100.0 36 ................................. ATCGCGCAAGTAGGGAAAGTTGCGCATGGTGTCCAC 86627 33 100.0 35 ................................. GTACTGCCAAGGTCACGCGAATAATCATGATTCAG 86695 33 100.0 32 ................................. ACCGTGCGCCGCTATTCGGCTGGCAAGGCGAC 86760 33 100.0 34 ................................. TGGACCGGCGCGGCATCCACCGCCAACGTGGTGG 86827 33 100.0 36 ................................. CTCTCTTGACTCAGACCTGCGCTATGAAGACGTTAT 86896 33 100.0 35 ................................. AACCTTGCGACGGATTGTCTCGGCGCGCTCCTTGC 86964 33 100.0 32 ................................. AAGATCGAGTGGTGCTGCGATGACTTGGATGC 87029 33 100.0 36 ................................. GATGGAACCGTGCGCCAGGTCACAGTCGACCATGAC 87098 33 100.0 34 ................................. CAAATCTGCGTTTTCGTGGTGATGATCTTATCAG 87165 33 100.0 35 ................................. TTATAATTGGCCATGTCAGCAAAAGGAGTCCACGC 87233 33 100.0 33 ................................. GCGTGAATGGTGAAAAAGGGCAGGTGCATAAAA 87299 33 100.0 33 ................................. AACACCGAAAGCACCGAACTCGGCACCGTCCAG 87365 33 100.0 33 ................................. ATCATGCCACTAAACGCATCCGATGAACAGCTA 87431 33 100.0 36 ................................. AAATGGAGCGACTCGATCACATATCGGCGTCGCAAC 87500 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 87568 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 87635 33 100.0 33 ................................. AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 87701 33 100.0 35 ................................. ACGTCGGACAATACCATCAAGCAACAGGCCAACGA 87769 33 100.0 35 ................................. CGGACGATGCCGCTTGTGCTGCGCTTCCTTGGTCT 87837 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 87903 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 87969 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 73 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGCGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTGTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : TCGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //