Array 1 137-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABI01000006.1 Pseudomonas aeruginosa strain HUM-7 NODE_79_length_23083_cov_13.4266_ID_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 197 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 257 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 317 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 377 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 437 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 497 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 557 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 617 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 677 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73267-73125 **** Predicted by CRISPRDetect 2.4 *** >NZ_RABI01000095.1 Pseudomonas aeruginosa strain HUM-7 NODE_16_length_105745_cov_16.5894_ID_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================= ================== 73266 28 100.0 29 ............................ TTGCGGCCCGCAACACTCTGCCAAGGAAC 73209 28 96.4 29 .............A.............. ATTCGGCCCGAATCACTTCGCCAGGTCCT 73152 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ============================= ================== 3 28 97.6 30 GACCTCGGCGCCGGCGGCGAACTGGGTG # Left flank : GACGCACATCCGAACTGGCAGGATCTCCTGAACGGACTGGAGGCCGAGCAACGGGTCCAAGCCGTAAGCGCGCTCCGACGGGTGTCCGAGGAGCTTCGTCGTCCGATCATCGAGCAGTGGCGGCACCGATGTGCAGGAGGAACTGTCGGTAACCCCTTCGGCTACCTCATGACGCTCATCCAGCGTGCAGTCCAGGGCAAGTTCAACGCCTCTTGGGCTCCGGAAGAACCGGCTGAGCGAACCATCCCCATAGCGGAACACTCCAGTCGTGCTCCGGCACCACCAAGCCCCACAACGCCTACACAGCCTCAGGTTCAGCCGAAGGGGGATACCCGGACAGGGAGCGAGGTCCTCAGCCGGCTCAAGGACCTCATTCGTCCCAGGCACGGATCGAGCGTGCCATCCGAGCGGGGTGATGAGCCATGAGAAAGTCTCGGCCGGGCGTTGTGCGTTTTCACAGCGGCCTAGGTGTTTCGGCCCGAAACACTCAGTCAGGTCCT # Right flank : CCTTGCTCCGAGTCGCCAGGGGAAATTCCCCAGCGACGAGCCATGTATTTCCTACTGCGCGCTCCTACCCCGATCAGCACGATGTGGCCGAACCCCTTCCCTATAAAGGAACACTGCACCATGGCTGAAACCCATCGGCTTCAGATCGGCTCTCTCCGCAGCGATGTCGCCCTGACGCTTCACACCTATCACGCCGCACGCATCTGGACAGGCCGGCAGAAGTCGGATGCCAAGCACAGCATCCTCGGCCTCTCCGGCTTCTGCGCATACGTGAATCGCATGCACCGCGGGGCAGCACAGGACGATCCGTACTCCGACTGGTGGCTGCTTCAGATCGAAGAGAAAGTCGAGAGCTGCCAAGCCGCACTCAAGGCCATCGACCAGCGACTGGATGACGTCATGGCCAAGCTGCCCGCGACCCTCGATATCTCCGAGAACCTGTCCGTCACACCGGTCAAGGTCCCGTTGTTCATCTCCAACCCTCTGGGCTTCAAGGCAGT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCTCGGCGCCGGCGGCGAACTGGGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //