Array 1 1303985-1303820 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134316.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1303984 28 96.4 41 ...............C............ GATGGACTACATCGAGACGGAATTTGATGTAAAACCTATTT 1303915 28 100.0 40 ............................ ACTGCAATCACTTTTTGGCATTCCCAAAGTAACCCTATTT 1303847 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 3 28 98.8 41 CAATCCACTCACCCGTGAAGGGTGAGAC # Left flank : TTCTGAGCCTCCATCAAAAACAAGCCGCGCTCTTGCGCTAAAGCAAAAAGTTCTTCAGCCTGAGCAGCTGTCAACGTAAACGGTTTTTCCACCAGAACATGCTTGCCTGCCAGCAAAGCCTTCTTAGCCGCAGGAAAATGGTCCTGATTGATACTTGCTACATAAATGGCATCAATCGACACATCCAACAACATGTCATCAAGACTACCATAAGCCTTAGGCAACTGATGCGCTGTCGCAAAAGCCTTTGCCTTATCAAGTGAACGACTGGACACCGCCACAACCTCGCCATTGCCAGCCAAGCGCACCCCCTCAATAAAACGAGGGGCCACCTGCGCCGTCGACACAATCCCATACCGAACCTTAGCCATCCTAACTCCTTTACCATGCATTTGTTAAGCTTATTATAGCATATGTGAGGGGGAAAGAGAGGGGAGAAGATAAATGGAAATTTATGAGTGAAGAAAAACTCAAAATAGATCCATCAAAAATCTAGGATG # Right flank : TGCGCCAAATGACACAGTTTATAAAGAAACGGATGGAAGACATAGAGGTGTTTTAAGCCTTTTCATCTCCATTTCGCTTCTTTTTTAAGTTATTTTTGCGCGAGCAAGCTAGGGTTTTCTGTGAAACCTAGGTTCGCACAAGAGATTTTTACAATAATAAGACACCTTTATCTGGGTCATAGCTGTCTGAGCGACCAAGTGTTTCCACACGCCTCTGCCAATTCTTACCCAATAAATAAAAGCGAATACTATCTGTTTCTCCATCAATGATTTGTGTTAATCGGTGCTTAATATCCACAAATTCTGCGGGTGTCACAGAACATTCAAAAACAGAATTTTGAACACGTTGCCCATAGTCCACACAGAGTTTAGCAACATGACGCAATCTTTTTCTGCCCGCCGATGTTTCAGTATTTACATCATAAGTGACTAAAACCATCATATAACATCTCCTAAACCATAAAAGGTGGATAGCTTTCTAAATCTCCTCTTATGGCCTT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCACTCACCCGTGAAGGGTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 1633739-1634303 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134316.1 Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1633739 36 100.0 30 .................................... GGTTGCACGGTAGGGTGAAGCATCGAGTGT 1633805 36 100.0 31 .................................... ACCGTCTATCTTGATGACGACACCGAGAGTG 1633872 36 100.0 30 .................................... TTACGGCGATAAAGGCTCAGATGGCAAGCA 1633938 36 100.0 30 .................................... AGCAAATGTGCTGCGGCAGTTAGCGTGCAT 1634004 36 100.0 30 .................................... TCGACAATATGATAGAGTAACTTTCGCAAA 1634070 36 100.0 30 .................................... GTATCCTTTCTCGATAAACACTTCGCTTCA 1634136 36 100.0 30 .................................... TACTTACTCATTTGAGCCAAGGCAACCACA 1634202 36 100.0 30 .................................... TAGGAAGCTCAATGAACTTGGCCGTTTTAG 1634268 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : GAGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTAATTTTTGTCAATAGCGGAGCTTTTCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGAATATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTCTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAATAGTCTACGAG # Right flank : CAATATCGTCCATGGTAACTTGAGAGAGGAATAAAGACAACATCCTTAAGCCTTTCTATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTAGAGCGATGGAACAAACATTTTTTATGATTAAGCCCGATGGGGTTAAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGATTTACGTTTGATCGATTAGAGCTAAGACAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGAGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGAACCATTCGGGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //