Array 1 20796-21799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTBI010000009.1 Citrobacter rodentium isolate A6_6.CR.CDM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20796 29 96.6 32 ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 20857 29 96.6 32 ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 20918 29 100.0 32 ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 20979 29 100.0 32 ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 21040 29 100.0 32 ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 21101 29 100.0 32 ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 21162 29 100.0 32 ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 21223 29 100.0 32 ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 21284 29 100.0 32 ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 21345 29 100.0 32 ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 21406 29 100.0 32 ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 21467 29 100.0 32 ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 21528 29 96.6 32 ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 21589 29 96.6 32 ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 21650 29 96.6 32 ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 21711 29 96.6 32 .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 21772 28 79.3 0 .......T....AG...-....A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACACTGCCGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCGACCATCGCTGACCTGGCTGTTGGTACTGCTGCGGGCCAGATCAAAACCGGTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGAAGCGCTGGGTGAAAAAGCGCCGTACAACGGTCGTAAAGAGATCAAAGGTCAGGCGTAATCCTGTACTTTCGTTCTGATATAAAAACCCGCTTCGGCGGGTTTTTTGCTTTATATCATCCAGTGATTTTGACCCCGGTCGTTCTGTCTCGATCGTGAATTGAAATTTTCAATGGTGCGATAATCATCACACTGTTTTGGTAGATTTGAAGAAAGAATAGCTACCATCTTCTTTATCTTATTAAAATCAACAGATTAGTTGCTCTTTAAAAATGACTATTTGTAAGGATTAAGTTGGTAGAATGTTGTATTGATAGAAATTGCTTTATAAACAGTTGGTTGTATTTAGT # Right flank : GTAGTTTTGCCTGGCTATCTGCGATCTGCGATAATGCGCCCTCATAACCCCAGACAGAGACGATTATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAAGGTTATTTCACCGGCGTCCCCGCCATTTTTATCCGTTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGATACCAAACACACCTGGGATAAGCTTGAGGATCGGGAAGTCTCCCTGTTCAGCATCCTGGCGAAAACCAAAGAGAGTGATAAGTGGGGAGCGGCGAGCAGCGAAGATCTGCTGGCGGTAATCAATCGTCAGGGATATACCGCGCGTCATGTGGTGATTACCGGCGGCGAACCCTGCATCCACGATTTAATGCCGCTTACTGCGTTGCTGGAAAAAAACGGCTTCAGCTGCCAGATCGAAACCAGCGGTACCCATGAGGTGCGCTGTACGCCGAATACCTGGGTGACGGTATCTCCAAAAGTGAATATGCGTGGCGGCTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 41871-42325 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTBI010000009.1 Citrobacter rodentium isolate A6_6.CR.CDM, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41871 29 100.0 32 ............................. GAGTATGTTTAAACGTTTACTGGCGCGCCTGT 41932 29 100.0 32 ............................. TCATATGTTGCCGCGTTTCCAGACGTCATGTT 41993 29 100.0 32 ............................. TGTCGGATAATCCGCACTTTTTGGCGAATGAC 42054 29 82.8 32 GT.........AT...........A.... TATCGTTCCTTCGCGGATGTCGTCACGCAACA 42115 28 86.2 32 ...........A....-.......A.T.. GAAGGTGATGAAATTAATCAGCGCAAACTGGA 42175 29 89.7 32 ...........AG...........A.... ATATAGATAGCCATCAACAACACCGCTTGGAC 42236 29 96.6 32 ........................A.... GGGCAGACGTTTGCCCGCTGGATGTAGCTATT 42297 29 89.7 0 .............C..........A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 AAGTTCCCCGCGCGAGCGGGGATAGACCG # Left flank : GTGCTATTAGCCGGTGAAATCGAGCCGCCGCAGCCCGCTCCGGATATGTTGCCCCCAGCGATACCAGAGCCGAAGCCGCTGGGGGATAACGGACATCGGGGACGTAGCGGATGAGCATGATGGTGGTTGTTACGGAAAATGTTCCTCCGCGTTTACGAGGGCGTCTTGCTATCTGGATGCTGGAAATTCGCGCTGGCGTTTATGTTGCAGATGTTTCGAAACGCATCCGGGAAATGATATGGCAGCAAGTCATTCAACTCGGTGGTGAGGGAAATGTTGTAATGGCATGGGCGACCAATACGGAGTCAGGTTTTGAATTTCAGACATGGGGTGAGAATCGTCGTATTCCCGTGGATTTGGATGGACTTCGTTTGGTCTCATTTCTTCCTGTTTAAAATCAAATAGTTGACTGATCTTTAAAAATGTGGATTTGTTGATTTTAAGTTGGTAGATTGTTGCCTTTGAAGAAAGTCTTTTAAAATCAGTCGGATATTTTTAGT # Right flank : GGGCTAATAAGGGTGCCCGGCACATGACACAATTGTTTCTATATTGTACCCATTTTTACTATCATTTCTTATGCTTCAGTTATACTGGTATTAACCAGAGTCCACAGAAAACTGGAGAAGGGTAAAGCCAGATTTGCTCGTTGATGTAAGCTCTCTTTTTGGATTTCAGAGATATAATAATATTAGCAATAAAACTTCCGAGGAAAAACAATACGCCTGACATGTCGTAAGCCAGACCACCGTAACCTGCATTCCGGCTCTTAATGTAAAGCAATATCATGGCTGTGACGGGATAAAGCATCAGCAGCAACGTCAATAATATCTGTTTTTTTAAGCGCATTTCCCTTGCAGACATTACGCAAAATATAATAAACAGAAACAGCCTGCCTGAATACCTGTATCTACCCATAAAAAATGAAAAGTCCGAAAGCATAGACATGAGTTGTTTAATCGATAGCGTTGTTTTACCCTTCATAACGTGATTGCCGGAGGCAATCACG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCCCGCGCGAGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //