Array 1 582759-583337 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNT01000002.1 Pseudomonas aeruginosa strain PA-W1 IPC1280_2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 582759 29 100.0 33 ............................. TTCAAGGGCTGTCGCACTGTCTGGTGGGATGGC 582821 29 100.0 32 ............................. GAGCTGTATTCATGACCACCCCGAAAACCACC 582882 29 100.0 32 ............................. ACCGTAACCCTCATTGAATACCTGGCTGAGCA 582943 29 100.0 32 ............................. ACCTTCATGCTGACGTGGAACGACCTGTTGGA 583004 29 100.0 32 ............................. GTTCCCTGATGGTTCCCTTGTAGGTTCTATTA 583065 29 100.0 32 ............................. GGATCTTCCATGCCATCGCGCTGTGGCTCGCC 583126 29 100.0 32 ............................. CCTTCGGGCAGATCATCGGCCAAATCCCAGCC 583187 29 100.0 32 ............................. TAGCGCAGCCCGTCGAGGAGCTTGCGTTGCAG 583248 29 89.7 32 ............A............G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 583309 28 79.3 0 A..........A..C..-.....A....T | C [583313] ========== ====== ====== ====== ============================= ================================= ================== 10 29 96.9 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CGCTCGGCGCGGCTGGACATGCAGAAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGGGTGCGCTGAGGCGTTCCGCCGGCCCACGGCCTCACGGCGAGGCTTCCCGCGCAGTTCGCCGGACAGGGTGGCGCCGAACGCCAGTTAGCGATGCCGACCGGCAGCGGCGTGGCCATTGTCGTCTTCAGGCTCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCTCCGTTGGCCAGGAAGCGCGGCGAGTGCATGGACGTTCGGGGCCGGTTCGATGGTGAAAGGCGGGGCCATGTCTGCGGAATCTTGCTCGGTTCCGGGTGAGATGGGGGCAGGGAATATAGGAGGGCGGCGGGTTTCGACTGGTTCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCAGCTTGGCCCGGTGGAATTTCGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGA # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGTGCAGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAACAGATTGTTAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGTCACGGGCGGGATTGGTCCCGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCATATCCCTCGCTGGCTGCTCCTTGACCAGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 592888-593893 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNT01000002.1 Pseudomonas aeruginosa strain PA-W1 IPC1280_2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 592888 29 100.0 32 ............................. GGGCTGTCGGTGCTGGCGCGGAAGATCGAGGA 592949 29 100.0 32 ............................. CCAGCAGCAGCGGACGCATCCCAAGCGACTCA 593010 29 100.0 32 ............................. ACGACTATGACACGGGCGCCCCGTGGGAAAGG 593071 29 100.0 32 ............................. ACCTCGCTAGAGGCGATCCTGGCTCGCTTGAA 593132 29 100.0 32 ............................. CGAAGCCCCCTTAGCCCGATAGCAGCGTCACC 593193 29 100.0 32 ............................. CACTCCCCGAACACCATGTGATCAAGCCCAGC 593254 29 100.0 32 ............................. GAATCGACCGCGTCCGGCGGAATCTTCGTGTG 593315 29 100.0 32 ............................. CCGTGCTTGCGCCAGAGGCTGGCGTGGTCGAG 593376 29 100.0 32 ............................. TAGGCGGTTTGCAAGCGCCGGTAATCGACCAT 593437 29 100.0 32 ............................. GCATAGGCAAAACCCCGTAACCCGCGCCTTCC 593498 29 100.0 32 ............................. ACGATCAAGGTCTTCAACCGCGAGGGCCAACC 593559 29 100.0 32 ............................. GCGCTGCCGGCTGGTGAGTACAGGCCCGTCGA 593620 29 100.0 33 ............................. CAATCATCGAGTCCAGATTCACATTGGCGCCCA 593682 29 100.0 32 ............................. TGGTGGGAGGTGCCGCCGGAGTCGGTCTACGC 593743 29 100.0 32 ............................. GCCGAACAGGTGGAACGCATCCTGCAGGCGCA 593804 29 100.0 32 ............................. GGCGATGCCGATCTCCTGAAGCGAATGTACGT 593865 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGGTGCGATATATGCACCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGACCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //