Array 1 1383322-1384692 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778145.1 Escherichia coli isolate SC423 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1383322 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 1383383 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 1383444 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 1383505 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 1383566 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 1383627 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 1383688 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 1383749 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 1383810 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 1383871 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 1383932 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 1383993 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 1384054 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 1384115 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 1384176 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 1384237 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 1384298 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 1384359 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1384420 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1384481 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1384542 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1384603 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1384664 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1410393-1410910 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR778145.1 Escherichia coli isolate SC423 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1410393 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 1410454 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 1410516 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 1410577 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 1410638 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 1410699 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 1410760 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1410821 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 1410882 28 75.9 0 .A.........C..T....A..-.C...C | T [1410901] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //