Array 1 36358-37585 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFZ01000026.1 Pseudomonas aeruginosa strain HUM-313-D1 NODE_37_length_49509_cov_22.1794_ID_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36358 28 100.0 32 ............................ TTCACACGATACCCAGGGTCCAGAACGTCCAT 36418 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36478 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36538 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36598 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 36658 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 36718 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 36778 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 36838 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36898 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36958 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 37018 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37078 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37138 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37198 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37258 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37318 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37378 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37438 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37498 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37558 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48418-46110 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFZ01000026.1 Pseudomonas aeruginosa strain HUM-313-D1 NODE_37_length_49509_cov_22.1794_ID_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48417 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48357 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48297 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48237 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48177 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48117 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48057 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47997 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47937 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47877 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47817 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47757 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47697 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47637 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47577 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47517 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47457 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47397 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47337 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47277 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47217 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47157 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47097 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47037 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46977 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46917 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46857 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46797 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46737 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46677 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46617 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46557 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46497 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46437 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46377 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46317 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46257 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46197 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46137 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //