Array 1 87128-88478 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPPF01000078.1 Enterobacter roggenkampii strain SMART_763 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87128 28 100.0 32 ............................ ACGGAATATCCAAATTTCCAGCAGGACTGTAA 87188 28 100.0 33 ............................ TGGAGTACCTGAAGAACCAGAACGACGCATCAA 87249 28 100.0 32 ............................ TCGCCGCCTTTGGCGTTTCAGGAGCATATAAA 87309 28 100.0 32 ............................ CCGGCCCTTCTCGCCGTCCAGTGTCGCCGACA 87369 28 100.0 32 ............................ CAGCGCGGCGAGTTTTATGATTGTTCTTCGTT 87429 28 100.0 32 ............................ ATATTCACCACAGCCGAAATAGCGAATTTTAT 87489 28 100.0 32 ............................ AAATAAGGAGAGCAGTTTTGGTAGTGCTCAGT 87549 28 100.0 32 ............................ AGATGCCTCCGGCGGCGCTACCGCGGGTTGCT 87609 28 100.0 32 ............................ GCCCACGTCGCGCAACCCGCGGTGGCTTTCGT 87669 28 100.0 32 ............................ ATTCTGGTACCCATAAACGAAACCGCCCACGT 87729 28 100.0 32 ............................ GCCAATAGGGCGAAGAGCAGGGAATGACTCAC 87789 28 100.0 32 ............................ GATACCTGGAACAACAACCGGAGGGATTTGAA 87849 28 100.0 32 ............................ CTAAACATTGATGGCAATTCACGAATAAGCCT 87909 28 96.4 33 .......A.................... TCCCATATGTCCATAAATCCACGCAGCGACCTC 87970 28 100.0 32 ............................ GTTATCAGGCTGCCTGTGCAGTATGGTCATCA 88030 28 100.0 32 ............................ AGGAGGAGCACAAGGGGCGGCGACTGAAAGTT 88090 28 100.0 32 ............................ ATGGAGATTCTCAACGACCAGCTAAACCAGGA 88150 28 96.4 32 ..........A................. AGGAACAGGCGTTTATACATCGGCTTGATAAA 88210 28 100.0 32 ............................ TCGTAAACTAATGACCACACTGGAGGGTTTAT 88270 28 100.0 32 ............................ GTGCCTCTGGCTGATGCGCTGGCGCGCATCCT 88330 28 100.0 33 ............................ ATTCCGACAAATCAGTTAACCCTGGTGACGAGC 88391 28 100.0 32 ............................ TCTGTAGCTTGCCGCCAAAAGAAGGCCGACTA 88451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGCGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAGGTGGTGGCGCCGCTCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCAGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAGCACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : AGCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGTACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCTAGCGCTTTCACTTCTTCTTCCACGATAGCCATGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 103345-103974 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPPF01000078.1 Enterobacter roggenkampii strain SMART_763 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 103345 28 100.0 32 ............................ AATCGCCATTTCGATCCCGGTGCTGGCACCGC 103405 28 100.0 32 ............................ GCTTGCTAACCCCGGCCAGGCGGGGCTGATTC 103465 28 100.0 32 ............................ AGAAATTCATGGGTGAACAAACTAACCCAGGC 103525 28 100.0 32 ............................ AGAATGTGTACGCCAGGCAGTTAGGGGGCTGG 103585 28 100.0 32 ............................ AGGCTGCTCAGGTGCCACAGCAACAGACACCT 103645 28 100.0 33 ............................ GCTTACTGCAGAAGTTAGAAAATGATCCCCGCC 103706 28 100.0 32 ............................ TGCGACAAGTGCCAGATATCAAGCGACTGTGG 103766 28 100.0 32 ............................ CGTGGCCGTGCGGTCACGGCGAAGCATCTGAA 103826 28 100.0 33 ............................ CGTACTCAGGTGAGATTAGTGGCTTCACATCAT 103887 28 100.0 32 ............................ GCGCAGATTGCCGCCCGTCTCGGACGAACAGT 103947 28 75.0 0 ...........C.....T...AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGTTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGAGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCACATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTAACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAAAATATTGATTTATATGGTTATAATTTACGTCCCAGAAAAAGGGTTTTATGCGAAAAAGTTGATTATTTTGTTTGCTAACAATAGGATGGCGTTGTTTCCTTTCA # Right flank : AAAAACAACTCTCTATAACATTCAGCTTACCTATTTAAAATTTAATACTATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGTGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 113460-113908 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPPF01000078.1 Enterobacter roggenkampii strain SMART_763 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 113460 28 96.4 32 ...................T........ AACCCTTGCGCACCTTGGTGAACAAGCGGTGT 113520 28 100.0 32 ............................ TTCGCAGAATGCGAAGAATCGGAACCAGAAAC 113580 28 100.0 33 ............................ GTATATGAATCCCCCATTTGCCAGGCAAGCGGT 113641 28 100.0 32 ............................ TGAGAAGTACGAAGCAGAGTATGGAAAGACAC 113701 28 100.0 32 ............................ ATGCGCGGACAGAATATGTCAGCAGAAACCGC 113761 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 113821 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [113845] 113881 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 8 28 93.7 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTCTGGTGGATGAAAAAGAGGGTGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAATTAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //