Array 1 46-594 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQC01000024.1 Bifidobacterium longum strain 1897B Contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================== ================== 46 37 97.3 27 G.................................... GACGCACCCAAGACGAGCGTATCCCTG 110 37 100.0 27 ..................................... TGATCAAGGGTATTCAGCGTGGCGAAA 174 37 100.0 27 ..................................... CGACTGTCGCCGCCTCGCCGAGTCCGA 238 37 100.0 27 ..................................... ACAGAAACGCAAAGAAGCTTGCTGGAG 302 37 100.0 27 ..................................... CGACTGTCGCCGCCTCGCCGAGTCCGA 366 37 100.0 27 ..................................... ACAGAAACGCAAAGAAGCTTGCTGGAG 430 37 100.0 27 ..................................... TCGTCCACGCATGCGTGCGGCCGCCCA 494 37 97.3 27 T.................................... ACCTTGACGTAGCCATTAGTGGTGTTG 558 37 94.6 0 G..........................G......... | ========== ====== ====== ====== ===================================== =========================== ================== 9 37 98.8 27 ACAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TGAATGCTAATTCCCAGCGAGCGCGTCGGCGTGAATCTCACCTGCG # Right flank : CATGTCCACCTGATTACCATTGCGACAAGTGCGGACTGTCCATCGACCGTGATTTGAACGCGGCCATCAACATCCAAGTCGCCGGGGAGTGCCCCGGAGACGTTAAATGCGCGTGGAGGAAGCGGAAGACAGACCCGTCCCAAGGGCGGGACAATGCGGCATCCGGCGAAGCGTGAACCAAGCGGCGGCGAGAGTCGCGTGAGACTTGGAGCATGGCCTCGGCAACGAGGCCATGCAGATGACTTCGCTCTAGCGACAAGCTAAAACAAAGTCATCTACAACGGTGCGGAAAACAGAGACATGACGGCGAATGGCAGTGCGCACATTGCGTACAGTGTGGTGGCTCTGAGCGGCAAGGATTGTGCCGAGCCTTTTTCGTTGCTGGATTCGTGGGCGGCGGGTTGATTGCTGTCTGTGTTTGCGGTCCGTGACGCATCAGGCATATGCGCTGCAATCAAGCGCAAAACATATGCCGGCGCAGTAATCAGCAAAATAATGAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 19817-20044 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQC01000023.1 Bifidobacterium longum strain 1897B Contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 19817 36 100.0 28 .................................... TGTACGGATATATGGCGGTTGCCGCCAC 19881 36 100.0 28 .................................... TCGATATTGCATCCGATTGCTTGATAGA 19945 36 100.0 28 .................................... TCTCCGCACGCAACCTGTACGACCGTGC 20009 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 4 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAAAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCAGATGCTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 565-776 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQC01000007.1 Bifidobacterium longum strain 1897B Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 565 29 100.0 32 ............................. TCGGGCAACGGTAGTAGCATCCGGGCCCGTGC 626 29 100.0 32 ............................. CAAAAGGGGAATCCCATTGAGGACTTGCAAAA 687 29 96.6 32 ....A........................ TTCGTCACTGCCGGTGCGTGATCGTGGCTAGC 748 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : ACGCATGCCGCAAGGGCATACCCGCACGCTACTTCACCGCCGCGGGCCTGGTCATGCGGCTCCTCAGGGCCCAATCGGACAACCGGCTCGACCGGGAACTCGCCGCGATCGGCAGGACCCCGCTGCTCGTCATCGACGAACTCGGCTACGTGCCCATCGACGAGGACGGCAGCAGGCTCCTGTTCCAGGTCGTCACCAACGCGTACGAGACCCAGAGCATCATCTACACCACCAACATCGAGTTCAGCGGATGGGGCAGGATCTTCGGCGACCCCAACATGGCCGCCGCGATCCTCGACCGCACCGTCCACCACGGACGGATGATCCGCTTCGAGGGCGAATCCTGGCGCAAGACCCACGCCCTCATGCAATAACCAATGCAATAGCCAACAACCAGCAGGACCGGCCAACGCCGAAACGGCCTGAAACCCGCCGCTCACATGGACTAAAAGAAACGCCGAAACGGCCTACTCCAACTTGACAAAACACAATCGTCGCTG # Right flank : GTTGATTCCTCAGCTCAATAGGCATCCGGAATGAGGCATCGGTATAGCGGCAGGGAGGCCATTGGGACTAGATATCCTCATCTCGCATGAAACCAACCTCCGTCACCGTACACGGCATCACTATCTTCTTCCATATCTCCGATAACGTGAGGCCTTACTCCAACCAGTTTTCTTTGCCTCGTTCTTACGCTGCTTTTGATTTGTATTCGGCCTCATGATGAGCTCGAGTCCGTCAAAATCGACAGGCTGCCATTCTTGACCGCATACCTTGAATGACATTCCCTGTTCGTTATCGGCCAAGTACACCATGATGGCGCGGCCGACCCCAATATTTTCAAGTATTTGATTCCATAGCAGTTCGCGGACACGCGCCGTGACCTTTCCCACGTATACTCCCGGAGAAATCTCCATCAGCCACCGAGTAAGATGTCCGCGTAACTTGGGAGGAGATACAGTAAGCACAACTACAATCATTCGAGTACATCCCTATGCTTAGAAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24307-27386 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQC01000006.1 Bifidobacterium longum strain 1897B Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24307 29 100.0 32 ............................. TTGCAGAGTTCGGCGCAATCTCTATAGCGGTG 24368 29 100.0 32 ............................. GTCAGGCCCACGGCGACGCCGCTGCTGCTACC 24429 29 100.0 32 ............................. CAACGTCTTGGCGGTCGTTTCATCACTCGGCA 24490 29 100.0 32 ............................. TCAGGCACGGCAAAACGCCATGCTGACATACG 24551 29 100.0 32 ............................. TCATAGCTCTACCGGTTCCAAAAGGCTCGCAG 24612 29 100.0 32 ............................. CCGGACGGGGCCGATTGCTTATCGGATATCGC 24673 29 100.0 32 ............................. TTTAAGCGGCTTTTCTCCGTAGGGTTCGAGTC 24734 29 100.0 32 ............................. TGCAGAGATCAATCAGCAACATCTTGGGCATG 24795 29 96.6 32 ............................T GAGCTCCTCAGGAGGTCCGGGCTCAAACGCTC 24856 29 96.6 32 ............................C ATATATCGACGGATGTTGTAACGCACGGTGTC 24917 29 96.6 32 ............................T ACGCCAGACGTTCCCGTCGTACATGCGTTCGG 24978 29 96.6 32 ............................A TGGAGGATGCATCATGACGATGACGAGCGCCG 25039 29 100.0 32 ............................. TCCAGCTCACCGAGTGGAAGGGGTAGCCGATG 25100 29 100.0 32 ............................. ATGATCGTGCTGCGGCCGCCCGCCCGATCGTC 25161 29 100.0 32 ............................. CCGAGAATTTCCTAGCCGCCACGGACAAAGCG 25222 29 100.0 32 ............................. GTGTTGACGTTCAATGACACGGGTTGATCCTT 25283 29 100.0 32 ............................. CTCACGACTAACATGTATATCGCACGCGCCGA 25344 29 100.0 32 ............................. CCAGCGTACTGACCATATGGTCGGCGTGTCGT 25405 29 100.0 32 ............................. CATTGGAAAACGCGCGACTTGATACGAACATG 25466 29 100.0 32 ............................. GCATTCGAAAGAGTCACTGACGTCTATGAACT 25527 29 100.0 32 ............................. AACCCGTAGCCACATACGGAACACCTGCATCC 25588 29 100.0 32 ............................. CTGATTGGCGATCCGCCTCGGCTGAATGGGAT 25649 29 100.0 32 ............................. TCGCCGTATTCGGCGCAACCTGTATCGCGGTG 25710 29 100.0 32 ............................. CGCTCAACTCGCAGGCGTATTCGATGGCATAT 25771 29 100.0 32 ............................. TAACGCCCTGATCGAGCGGAGGGAACGGGAGC 25832 29 96.6 32 ............................A AGGGCCTGCGCGCATAGAATAAAACCGTCTTA 25893 29 100.0 32 ............................. GAGCCGATGGAGGAGAATGTGCTGGCGATGTG 25954 29 100.0 32 ............................. GACCCTCGACCACTGGGACAACCTCAGCGATA 26015 29 100.0 32 ............................. GACCCTCGACCACTGGGACAACCTCAGCGATA 26076 29 100.0 32 ............................. TTGGGTACAATGGTCAGCCCGTCCAAAGTGAT 26137 29 100.0 32 ............................. GCGGCAGGAAGTCCGCTGTCGTGTAGTTCCGT 26198 29 100.0 32 ............................. GCATGAAGCCAGGCCGGGGCCTTAGAAAAGGA 26259 29 100.0 32 ............................. CGAGAACTCCGGAACCTGCGGACTCGTGTACG 26320 29 100.0 32 ............................. GCTTAGTTGACACAATCCCCGACATGCGATAA 26381 29 100.0 32 ............................. GCTCCGGGTAGGCCTTTGCCACGTCCGTGCCG 26442 29 100.0 32 ............................. GTGGACGGGTTTGGTCTGGTTTATCGCGACAC 26503 29 100.0 32 ............................. GTGTGGCGCATCGAACGGCTCGGGAAAGCGCC C [26513] 26565 29 100.0 32 ............................. GTGATCGGCCAGTTGAAGGCCAGCGTGAAGGA 26626 29 100.0 32 ............................. AACCACCAGACCACCAGAGAAATGGAAAGGAG 26687 29 100.0 32 ............................. TTCGCGATCATGTACACGTGGGTGAGTTTGCC 26748 29 100.0 32 ............................. CTCCTGCACGTTGATGGGGTTGCCGCATTTGC 26809 29 100.0 32 ............................. TCATTGTAGATGGCGCGTGTCGTTCCGAAGAA 26870 29 100.0 32 ............................. CACACTGCGGGTCTCGGCCTTGCGCTTGTCGG 26931 29 96.6 32 ..........G.................. TGCAGGAGGGCGAAGCCGACCCACACGATGAC 26992 29 100.0 32 ............................. AAGATGACCATCGGCTTGCCGGCCTTGGAGGC 27053 29 100.0 32 ............................. GACCATCCATGGCGAACTTCAAAGGGGAGTAC 27114 29 100.0 32 ............................. CAGCCAGCCGCCGCAATGCTCGATGTAATCGG 27175 29 100.0 32 ............................. GAGAACAAATGAGCGACCTCAACGACACCATC 27236 29 100.0 32 ............................. TCCGGGTTGACAATGACCCAACGGCCCGCGTC 27297 29 96.6 32 ............................T CAGAGCCCAGTCATGGACACAGGCCAAGTGTC 27358 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 51 29 99.5 32 GTTGGCCCCGCACGAGCGGGGATGATCCG # Left flank : TGGTGTTCGTCGTAGACTCAGTAGCCAATGGACGTTCCTTATCGCTCGCTAATATGTGGTAATTCCCCTGGGAGCGCCGGCATGGCCACCATATGCCTATGCGGACGCTTCATTGTCGGCGGCATGCCCGCAATATGACACACCTCATGCGAAGTCAAAAGGATAGCGGTATGGCGCGACAAATCCACCTTTTGCCATTACTGACGTCGCGTTAATGTAACGGAATCCATGTTCTATCGCAAACAAATAGACGAATGCATTCCACGAAGAAAAACTCAATATCGCAGCGTAAATGATGACCCCCACAAAATCCTGTATATTGTCAATATATGTGATTTCGGCACACGATTGGCAATAGAGCTTGCGAAGGGGTGAGTATGCGTATTACCTTTCAACACATCACCCAGTTTCTGCTTGCGATTCCCCTATTGCCATATACCACTGCTGTAATCAAATATTTTTATTTGACTCAACCCGCTTTTTCCTCGTAAAATCAGACT # Right flank : CAGGTAGTGCCACGGTACGGTTATCGTCTGTGTCTGTTCAATAGAAAGTGGGCCGTGTGAGCGTGTGGATGTCTTCCATGTGAGCGGCAGGTTCTGGTCCATTTCAGCGTGTGGTGAGAAACGAACACCGGCCCGTCCTGCCTGGACTAGTTTCCCGAGTTGAAAGTCAAACCGTTCGGTTTTCTCGGGAAAGGAAAGGAATGACGGTACCGGTGTCCGTACAACAACGTATCAGGGTGCTTGACGCGCATGGCATGTCATGGAGGAGCATCGCGAAAGAGGTGGGCGTGGCCCGCGACACGGTCGCGAAGTACGCCGGGAGGGAGGATTGCTCTCCCGGACCGGAGCGCTCCGTATCGCGGCCGTCGAAGCTCGATCCGTTCAGGGCGACGGTGGACGGGTGGCTGCAGGCGGACCGGTTCATGCCCCGCAAGCAGCGGCACACCGCCAAGCGCGTGTACGACAGACTCGTGTCGGAGAAGGGCTACGAGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //