Array 1 78376-77879 **** Predicted by CRISPRDetect 2.4 *** >NC_013940.1 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78375 30 100.0 37 .............................. CGCTTACAGCTAGTAGTTATGCTATTTTTGTTGAGCT 78308 30 100.0 38 .............................. GTTTTCAAAAATATTTGTGTATTAGTATTACTAAGCAC 78240 30 100.0 35 .............................. CACGTTGTATCACTTTCATCAAATACATCATTTCA 78175 30 100.0 36 .............................. TTATATCCGACACATCTTTCCTTTTTATTAAACTTT 78109 30 100.0 38 .............................. AATTTATCTGCATCCCACCATATCTCAAAATAATCAGT 78041 30 100.0 36 .............................. ATTACAAAAGCAATAAATGATGTAATGGTGATTTTT 77975 30 96.7 38 .................T............ ACAGAAGTTATAGTTGTGGTAATTATTTTAGGTGTTCT 77907 29 80.0 0 ....G............T....A..-..TT | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 97.1 37 GTTTATATTGTACCTATCAGGAGTTGAAAC # Left flank : TTTTATTCAATTAGATGATACAGCTGTAACAATTTGGAAAGAATATATTAAAATAAGTAATATAAAAGATTATTTGGAAAGAAAAAGATTATTTAACAATATAAAAAAAGATTTTTTCGAATACATTATATCAGTACCTATAAAAGACAATATGAATATTCCACCAATTGAAAATAATTTTTACTATGTACCTATAGATAATTTAGATGATTATTATGACTATGAAACAGGATTCAAAACTGATAGTAATTTATATATTGCACTTTAGTCGATCTCAATGTTTTAATGAAAAAACAAGTATAAGAGTAAGTAAAAAAATAACTAAAAACAGACATTTTATTAATAATATAAAGTAATTGTCGATCTCCAGGGATTTTTGCATGATTAGAAATCGACTGAAAATTATGTAAAAATTTTGAAATTTTTTGTACTTTTTGATATAATAATAATATAGAGACAACAACAAGTTGTTTGAAAATTGAATATTTTTAGAGATAAGG # Right flank : TAATATTTTTGGTTTATTATAACATTCTAAATTCCAGAATATAGAAAATTTTAAATTTTCAAACTATTTTATTAACTGCATCAATGAATTTCTTGTTAGATTTATTTAGTACAATATAATTAAACCATGTATTTTGTAATTTATATTTATCTAGTTTTTCCATAATATTATCATTTCCATTAAATAATATAAATAATAATTTATAATTATTTTTGTTATTTTCTAATAATACTTCATATTTTTTAATTAAATCCTCTAGTATTTTAAAATCCTTTAAATAAATTTTAATTTCAATATAACTTATAATTTTATTCTCTTTTTTTATTATTATATCAGGTTGTATTTTATTTTGTTTTTTATTACCAACTTTAACTGGTTTAGGTAATTTAATTGTCTGTTGTACATTTATTTTGAAATTTTGACTTTGCCAATACTTAATGTCTTTTGTAATTGGTAGCAATTTAAAATTTTGATTATATTTTTTAGTTATATAATGAATA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATTGTACCTATCAGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 86388-85559 **** Predicted by CRISPRDetect 2.4 *** >NC_013940.1 Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 86387 30 100.0 37 .............................. GAATTTGTTACAAAAGATAAAAACTTTGAAAAATACA 86320 30 100.0 37 .............................. CAATAAAAATAAGTGATAAGTATGGAATTGCTGAAGC 86253 30 100.0 36 .............................. AATATGCATATACATATAATTTATACAAAAATATAA 86187 30 100.0 37 .............................. ACAGGCACAACAAAACAGAATATATCATCAATAGTTA 86120 30 100.0 34 .............................. TAAAACAACAGCAACAAAAACAACAGCAAAAGCA 86056 30 100.0 39 .............................. AAAGAGGCTTGGTACATGCGCAAGGATATGCTTGTGCAA 85987 30 100.0 37 .............................. ACACCTCTTGCAGCATGCTCCAAAAAATTTGTTTCTA 85920 30 100.0 35 .............................. AAGGTTAGCAAATTCACACTTAGGAATTGGATGAG 85855 30 100.0 37 .............................. CTAATGAAATTAATTTCTGGTCCAACTGATTTATCAA 85788 30 100.0 36 .............................. GGTTTAAATATAAAGGTGTATACTGCAAAGAATATC 85722 30 100.0 37 .............................. TATATACGTAATCATCAACTTTTAGTTTACCATATTT 85655 30 100.0 38 .............................. ACAGAAGTTATAGTTGTGGTAATTATTTTAGGTGTTCT 85587 29 76.7 0 ....G.......T....T.....A.-..GG | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 98.2 37 GTTTATATTGTACCTATCAGGAGTTGAAAC # Left flank : ATATTTTTACCTCTTGATTTTGATTTTGCATTTCTTTTCATGATTATATTATAACATAATTTATCAAAATAAATAATAAATAAATTATAAATTAGATTATAAATCAGGAGAACCCAAATTATGTATTAAATAAGTAATCATGGACAAAAAAGGTATATAGAGATAATAAGGGTTCTCCTGATTCCCAGTACTCACCCCCATATATAATAAATATAATAATAAAAAATAATTAAAAAACAATAATTCATAATTACTTTTTTTTATTTTCGTCGACCTCTATTTTTTTACTATTAAATGATAGACAAAATACTCTAAAAAATATATAAAATAGATTATTTTGTTATAAATACCAAATAATTGTCGATCCCCAGGAATTTTTGCATGATTAGAGATCGACGAAAATTATGTAAAAATTTTGAAATTTTTTATACTTTTTGATATAATAATAATATAGAGACAACAACAAGTTGTTTGAAAATTGAATATTTTTAGAGATAAGG # Right flank : TTAAAAAAAACTAATTATTATTTAAAAAACAAATCAATATAATTAATAGTCATGTAATAATAAATAAAATTAATATATTTAATATATTAAAACCAAAAACATTACTTATATTGTCAAATTTAATATAATAATATAAAAATTATTTGACATTAATATTTTTTTATAGTATAATAATTAATATGAGAATGAAAATAGAAATTAATTCAAATAAAAATTTTATATTATTACCTATAAATCATAAACATATTATACAAGGATTTTTATATAATAATCTTCCGAAACCTCTTTCAGACTTTCTTCATAATATAGGTTTCTTTTATTATAAGCGTCAATTTAAACTATTTACATTTTCTAATTTATATAGTTCTTATTTTCAAATAATTACTATACAAGATAATAAAAAAACAGATAAATATATTAAATTTAAAACACCTGTAACATTATATATAGCATCAGGAATTAATAATTTTATTAATAATTGGAATAATAATTTTTTATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATTGTACCTATCAGGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 516697-514731 **** Predicted by CRISPRDetect 2.4 *** >NC_013939.1 Deferribacter desulfuricans SSM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 516696 30 100.0 37 .............................. TATCTACAAGGATGGTCTGTTTTCTTTATATAATATA 516629 30 100.0 37 .............................. TTTTCCGCGTTGGTTTAAAGATTCTGATGTTATATAT 516562 30 100.0 37 .............................. AGACTTGTATCACTTCCTTGTTCAACTTCTATGTCAA 516495 30 100.0 36 .............................. GAATACCATTCACAATGTTCATTTCTGAATGTTTTC 516429 30 100.0 37 .............................. GTATCTTGTTCAGACCAACCTTGCAGAATTTGTTCAA 516362 30 100.0 37 .............................. GCCATTGAAGACCAATATGGTGGATACAATTTTAAAA 516295 30 100.0 36 .............................. AATTGAACAGTAACCCCAAATTGATTAATCTTTTCT 516229 30 100.0 36 .............................. AACAATTGAAAAACAACGGGAGATTGAACTGATGTA 516163 30 100.0 37 .............................. AGAGACTGTAATATAACTATTTATGGAAAAGGGTTGG 516096 30 100.0 35 .............................. AAAATAGATATGCTTTTATGGCAACAAAAGCCCAT 516031 30 100.0 36 .............................. CATTTCCATCATTATTTTCGTTTATGCAATAAATAT 515965 30 100.0 37 .............................. TTATATTTCATAACTACCCCCTTCATTAGTTTTCTTT 515898 30 100.0 36 .............................. AATGGTTTCCTATTCGTAAAGTAACTTTAGATATTT 515832 30 100.0 35 .............................. TTCCCTAATGAAAGACAAGGATGAAATTGCTATAG 515767 30 100.0 38 .............................. CCCTGTTCGCCGAGCCTGATAACAAGCTTTGTGCAGAG 515699 30 100.0 37 .............................. TATCTTTCCCCGTTTTGACAGCTGCAGCGATAAGCGG 515632 30 100.0 37 .............................. ACAATATCGAACAACGAGCTAATCAATGGTATAAAAA 515565 30 100.0 37 .............................. CCATTTTTTAAGCTTCTAATTTCTAAAACACAGTGAG 515498 30 96.7 37 ................T............. TTGTTATCTTTTGATTCAATGATTTCATATAAATATT 515431 30 96.7 38 ................T............. CATCTTCAGTTAGAATTATCTTTTTATTCTCTTTGAAA 515363 30 96.7 36 ................T............. AGCACATCTGCAACATCAAGTATAAACGATTTAATA 515297 30 100.0 38 .............................. TCTTTTATTTCCTCTTTATCCCCGAGATGGATTTTCAC 515229 30 100.0 39 .............................. TGACTGCAAGAAACCTTTCGAGTCCCTTCTCAAGCTCTT 515160 30 100.0 36 .............................. ATGGTCGTCAAATTGTCAAGATGAGTCTTGAGGAGC 515094 30 96.7 36 ....................A......... CATCACCCACCTCACAAGCTACTGCATCAATACTTG 515028 30 100.0 36 .............................. TCCTATCCACTAACAAATAAACAAAACCTGGGACAT 514962 30 100.0 38 .............................. TGTAGTAGATACAACATACTCAGCTTTTGATTTGATTG 514894 30 100.0 37 .............................. AGTACCTTGAACAAGAGTACAACAAAAAATTAACTCT 514827 30 100.0 37 .............................. TTTCTATCATATACTTTGATTGAACCTGTTATTTCTG 514760 30 93.3 0 ............................TT | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.3 37 GTTTTTAGAGTGCCTAAGAGGAATTGAAAC # Left flank : GAAGATGTTTTTATTGAAATTGATAATGAAGCCAAAAAAGTATGGGAAGAATATACAAAAATATGGCAGTTACAGGATTTATTTGAAAGAAAAAAGGCATTTGACAGTATAAAATCAGACTTTTATAAATTTGTTGTATCAGTTCCAATTAAAGACAATCCACCACCAATTGAAAACAATTTTTATTTTGTTCCGTATGAAAACATACATGAGTATTATGATTTAGAAACTGGTTTTAAAGTAAAAGGCGGGCTATTTTTTAGTTTTTAGTCGACCCCCATTATTTTTGATATTTTTCTAAAAATTTTTTTATTAGAAAACCATAGAAATATTGTATTCATTTATATGTATCAATCAGTTGTCGATCTCCAGGTTTTTTTACAAGATTAGAGGTCGACTAAAAATCACTTTAAATTTGACACATTTTTCAAAATTTTGTATAATAAAATTAGTAGATTTATCAAAGATGTTTGACAATTTGATATTTCGTAGGGATAAGG # Right flank : ATTTGTATTATTTTCCTATTTATCCTGCGTCGAAAGGTTCTCATTTTTAGGATGATAAGAGGCTGTTGCACAAGGGAACAATTTTCTGATATTATTAAAGTTTTGAGATTGCTTCGGCAACTAATGTTGCCTCGCAATGACCCAAAAAAGCAGTCATTGCGAGCGTTAGCGAAGCAATCTGAGGTGTTTAAGCAATTATTATTTGCAACGGGTATATTTTAGTTTTAATTCTGCTTGCTAAAAAATTCTTTGTAAAATTGATCCGCTTGTTCCGCCTTTTTCCTTAAAGATTCTATTTCTGAGTCCGTCAAGAGTCTTGAACCGAAAAAGGTAATCGGCTTGTCCTTTTCTGAGTCCAGCGAAAGTTTCTCTGATATTTTTTTATCCAATAATTTTTTCCTAGTCATATTTTCCACCAAACTAATTGTTTATTAAGAACAATTTTATATATCCAGCTCATAACCCTTTGTCAATTTCTACTTAAATAAAAAGAGGTGTAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 527565-526129 **** Predicted by CRISPRDetect 2.4 *** >NC_013939.1 Deferribacter desulfuricans SSM1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 527564 30 100.0 36 .............................. GAAAACCCGATGACATTAATAATGGCGTCGGGTTTT 527498 30 100.0 36 .............................. AAAAAAGTGTCCATTATGTCCATAGAGTCCAGAAAT 527432 30 100.0 35 .............................. GGGTTTAAAAGATGTCCATAGATATGAGCGCGTTC 527367 30 100.0 37 .............................. GACTTTGCTGTTAATAGCGGACCAAGAAGAGCTATTA 527300 30 100.0 36 .............................. GAAAACTCTTTTATTATTCCACGCTTTGAGCCCCTT 527234 30 100.0 39 .............................. TTTCGCTTTGAACAAAGTTCAAAGCATGAAGGGTTGCAA 527165 30 100.0 37 .............................. TTTTCCTGCTTCTTCCAACCCCACAAGTTTTTTGGAA 527098 30 100.0 38 .............................. AATAATTTCGTTCGCAAGGTTTTGAAGGTCAAACCATC 527030 30 100.0 38 .............................. AACCATCTATAATGCTCCATAAAACCGTCGTTGAGTCT 526962 30 100.0 37 .............................. CAGATTTGCACAATTACATTAGTTATTTATTTGACAA 526895 30 100.0 37 .............................. CTAAACAACAAAAAGAAAATTACAGATTTGTACAATT 526828 30 100.0 39 .............................. GTTGCGCAAATTGCACAACTGTAATATTTGGATTGACAA 526759 30 100.0 38 .............................. AAAAAGCACGCTTTTTAGCGTGCTTTTCCTAATTTTTC 526691 30 100.0 37 .............................. TTTTAACTACTTTATTTATTACAGTAATGCCTATTAT 526624 30 100.0 36 .............................. ATCATTTGTAAACTGAATCTGATTCACTATTTGTTA 526558 30 100.0 36 .............................. ATCATTTGTAAACTGAATCTGATTCACTATTTGTTA 526492 30 100.0 37 .............................. TAAAATTTCCTATCGAATATTTTTTGAGCTTCATCAA 526425 30 100.0 36 .............................. AATAGGCGTTTTGCGATTGCCTTATCTTTTGTTTTT 526359 30 100.0 36 .............................. GATCATCAGGCGAAATTGGTATTTCCTCATTCATCA 526293 30 100.0 38 .............................. TCAAATGAATATAATTCGGACTAATATAGATTGGTTGA 526225 30 90.0 37 ................AA....T....... AAGGTAGATCAATATAAACTTCCTTCTCAAGTTCTTT 526158 30 76.7 0 .......A.......TAA....T.....GT | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 98.5 37 GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Left flank : AAGCAACAAGACATCAGATAAGAGCACATCTATCATTTTTGGGATTTCCAATTTTGGGAGATACACTTTACGGTGATAAACAATACAAAAGACTTATGCTCTCCTGTATTTATACAAAAATAGATAATTTTGAAGCCCACTCCCCAAAAAAAGAAAACTTTATAAAAGAGTATCAAAATCTCATTTCAGTTTAAGTATTTTGGTCTTTGCAAATTGATGATATGCAATATCTAAAAAGTTATTTTTAACTGCCTAACACTTAAATTAGTCAATCTCGCAATTTTTAATGTTTTTTAAGGAAATTTTTTTTATTAGAAAACCATAAAAATCTTATATTTAATTATAGGTATCAATTAATTGTCGATCTCCAGGTTTTTTTACAAGATTACAGGTCGACTAAAAATTGCTTTAAATTTGACATACTTTTCAAAATTTTGTATAATAAAATTAATAGATTTATCAAAGATGTTTGACAATTCGATACTTCATAGGGATAAGGG # Right flank : TAATTAAATAAAAGCTTTTACTAATATCCATTAATTTTATATTAATAATATGGATACAGTTAATATCAACGGAACTCTTATTTGGTATTATTATATCTGTCCACGAGAAGTATGGTTTATTGGTCATTCCATAGAAGCAGATCAGGAAAACGACTTTTTAGCTTTAGGAAGGCATATTCATGATTTCTACTACAAAAAGCAAAAAAAAGAATTTATTATCGATAATACAATAAAAATAGATATCTTGCCTGGTAAAAAAGTTATTGGTGAAATCAAAAAATCTTCAAAATACTTAAAAAGTGCAACTATGCAAATTGCTTTTTACTTATATTTTTTAAAGCAAAAGGGAATAAATTTATCGGGTGAGCTTTTGTTCCCTGAAGAGAGAAAAAAGAAAAAAATATTTTTGACAAAAGAAATCGAAAATGAACTTAAAAATGCAATAAGTAATATTAATAAAATACTAAATATGGATAAGCCTCCAAAAGCAACAAAAATCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTGTAGGGTGCCTATGAGGAATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //