Array 1 91677-90794 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUAD01000014.1 Escherichia coli strain SJRP/Ec42690 Cotig_152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91676 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 91615 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 91554 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 91493 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 91432 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 91371 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 91310 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 91249 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 91188 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 91127 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 91066 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 91005 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 90944 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 90883 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 90822 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1070-125 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUAD01000015.1 Escherichia coli strain SJRP/Ec42690 Cotig_214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1069 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1008 29 96.6 32 ...............A............. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 947 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 886 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 825 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 764 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 703 29 96.6 32 .....T....................... CAATCTGAGCCAGACGCGACGAATAAAAGCAT 642 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 580 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 519 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 458 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 397 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 336 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 275 29 96.6 32 .T........................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 214 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 153 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTCTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //