Array 1 149021-147891 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOA01000011.1 Lactobacillus taiwanensis strain 601c 601c_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 149020 29 96.6 32 ............................C CAAGTACCAGATTTTCTTATTTTTATAAAGCC 148959 29 100.0 33 ............................. GTACCAGTTATTGTTAGAATCTCTGAAATTAAG 148897 29 96.6 32 ............................C TGATCCTGCGGGCAAGGTTGTGAAAATAGATG 148836 29 100.0 32 ............................. TGTTTTGCCAAAGTCATCAAGTGATTTACTGG 148775 29 96.6 32 ............................C ATTTAAAGTTAACCATTGACGGGAGTTTCAAA 148714 29 96.6 32 ............................C ATAGGCTTAAATCCTCACAATGGTAACTACTT 148653 29 96.6 32 ............................C TTCTGCCAGCTTTTTATGATGTCTCCTCGAAT 148592 29 100.0 32 ............................. AAAATTTATTGAAAAAGATGAAAATACATACG 148531 29 100.0 32 ............................. TCCTTATAGCTTTCGCCTTGATTTCTCATCAA 148470 29 100.0 32 ............................. ATTTTGTGCTATCCAAGGATAATCTGAAAGCA 148409 29 96.6 33 ............................C ATGCTTGAATATATTCACGCCAGCAAGTACATG 148347 29 96.6 32 ............................C TTTAGGTAGATCTTTATTCATATCTAATGTTT 148286 29 100.0 32 ............................. GGATTACGTTTATTTTCACCATGTAATTATTA 148225 29 100.0 32 ............................. ATCTTTAGCAGTTCCTCCAGCTACAACGGCCG 148164 29 100.0 32 ............................. CCTTCCTTAGGATCAGCAATAGTAATCATCTT 148103 29 100.0 32 ............................. AAAGGTTTCAGTGCGGCACAAGCTTCGATGGA 148042 29 100.0 32 ............................. TGGAATGTCCAAAGTTCCATAAAAATAGCGAT 147981 29 100.0 32 ............................. GACGTTGACTATTTTGCTGATGCGTATATGAA 147920 29 79.3 0 A......T.....T.......G.A....A | T [147894] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.7 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATATATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGGTGTAAGTGAATTAACGGGTTTAAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTGAAAGACTTTCTTGGTGATCGAATTATATTAGGTTACAATTTAACCTTTGATATGAGTTTTTTGGATATAGCATATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACGGTATTGTCTGAATATAAAATTGAAAATCAAAGTCCACATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTGGTCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATATATTTGGACGATTACATCTTTTTAAAATGTTGCTATGATAGGATCCTTTTAGT # Right flank : TGAAAAGTGGCGGTGGCAAAATTATTAACTTGTATTCTCCCAGTAAATAAAAAATGCCACATCATTCAGAGAATACTATATCTATGCATCGTCCTACGTCAATTAGTCGAATGATTTGATAGCTCATATTAGTTGATTTATATAAAAAATATTAAGAGAGAAAATATATGGCATTAGCAATCGACTAAAGACTAATAGGATTTGCTACAATAATGAAAGGACAAGTGAACGTAGTTTATTAGAGAGAAGAACAATGGCGCTATGCTAAAAAAGCGATTTACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGAGCGCGCATAGAAGTCAGATAGGTGCGGGTGCAAATTTCGCCTTGCTTGTCTTAAAGAAAACGATACTCAATTGAGTGTCGTTTTTATTTTGGTATTTTTTCTCGATGATAGGATTTAAATATTTAATAAAGATAATTCAAATTATCATTCCATAACTAAATACACTAACTCCACTTGTTATGAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 160784-159166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOA01000011.1 Lactobacillus taiwanensis strain 601c 601c_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 160783 29 100.0 32 ............................. TTTGGTATTTAATTCATTTTCAACACCTTGTG 160722 29 100.0 32 ............................. AATTTTTGTAATTTTTAAAGTAGGGTAGTTGT 160661 29 100.0 32 ............................. ACTGATTAGCGAAATTAAAAAGTTTACGATTA 160600 29 100.0 32 ............................. ATATGCTTGGTCAATTAAATTTAGAAAGTATC 160539 29 100.0 32 ............................. TATTGAACGATCCTTTACTTTTTTCTCTAAAT 160478 29 100.0 32 ............................. GTGTACTAAAAAATTCATCTCGTTCTTCATTG 160417 29 100.0 32 ............................. AACTAACTTGTTAAAAAATGGTGAAATTGCCT 160356 29 100.0 34 ............................. ACAAACTAAGCTTAAACCCATTGTGTGAAAGAGT 160293 29 100.0 32 ............................. AAATAATCTGTAATGTGCTGAACGCCATTTAA 160232 29 100.0 33 ............................. ATCTGGTACATCTTTGGCTTTATAAACTCCATG 160170 29 100.0 32 ............................. ATGATAACACACAAGTGCAATAAAAGCGGTTG 160109 29 100.0 32 ............................. AATCCTGATACCGTGGCGGGTTATGCTATTCT 160048 29 96.6 32 ............................C TTCAGGTATTGACCAAGACGGAAATGCACAAT 159987 29 100.0 32 ............................. GACAGGCAAACCTCCAAAATAATGCTGCTCAT 159926 29 100.0 32 ............................. CGTTTTTACTCTGCCAGATCTTTTATAAAACT 159865 29 96.6 32 .......................A..... AGGTCATTCTTGATATCTCGGCCACTTTTGCC 159804 29 100.0 32 ............................. TACGTTCCTATGGCAATTCGTAAATCAAGCAC 159743 29 100.0 32 ............................. CATCATTTGTGCTGTTGGTGACATTTCGACAC 159682 29 100.0 32 ............................. ATTATTTGGATTACTATACCAAGTAGGTTTAG 159621 29 100.0 32 ............................. CAGGATATGTTGCTTCATAGAAGTCTGAAAGA 159560 29 100.0 32 ............................. ATTTGCATTGCTTTCTGACGATCTTCCATCTC 159499 29 100.0 32 ............................. AACTACGTTACCGCCATCTGCTTTAAAGTTCT 159438 29 100.0 32 ............................. GAATGTGCACGGCTTTTATCCATTCATCGAAG 159377 29 100.0 32 ............................. CTTACGCAGCCAACTCATATCACCCTCCTGAG 159316 29 96.6 32 ............................C GCTATTTAAGATTTATTTTGCCATCAACTGAT 159255 29 93.1 32 .....................A..G.... GCAGCAAACCGAAATTGAAGCTTCACGCATTA 159194 29 93.1 0 ..............A.............C | ========== ====== ====== ====== ============================= ================================== ================== 27 29 99.1 32 GTGTTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATCAAATTTTTTGCCTTATTTTTGATTCTTGTAGGTGGAGTTATTTCTATTATTGGAATTCCAATAGCAAAGTTGCTATTTCTACTAGTATCTCGTCAGCGAGAATATTTAGCTGATATTGGTTCAGCTGATTTAACACGTGAACCAAGCGGCTTAATTTCAGCTCTATCTAAACTTGAAAAGTTAGAAGAAGGGGAGGCTACTCCTCAAATTGGCTCTCAAGATTTGGCGCTACAACATTTATATTTTAATTTTCCAAGTGCCCATAATTGGATTGATCGACTTTTCTCCGATCATCCGCCTTTGGATAAAAGAATTGAACGCCTAGAAAATAGTAATCGGATAAAATAAGATAAGCACGACCAAATATCACGAAATGGTATCTGGTCTTTTTGTTGGGTTAAGCTGTAGGTTAAGCACTTTATTTTTTGTTGATAGAAACTAATGGAAAATGATATTATTTGAATTAGAGAATGGCATTATATCAAGGATCTTTTAGT # Right flank : ATTCCTACTAACTTGATTGATGAAGTAGCCAAGTGTTTTTCACGTTAACCTACGATATTGGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGGCGCAATAAGTAGTCATATGATTTACTACTGGCCATAAAGATCATGGAAAGAGCTAAAAAGTAGTCCTTCTATAAGTGTCCTTTTTGATTTTTAATTAGAGTACTTCCTATATTGTATAAAGGAAAATTATCGAAAATGATGAAGAAAGAAGGTTAACTGTATTATTGGCCCATTGAATTTATTAAGAGGAAGGTACGATTAGAACTATATAAGGTTTATATCAAAGTAATTAAGCTAGGACTTTTTGGAAAAGTAGTGCACGATAATTCCGGATTTAAAAAATTGTATAGTGTAAAAATCAAGTCTTTAATTTCTGTTCCAAAAAGAATGTTGAGTTCAATTCAGCAAAGGTAAAAAGTTTATATCATTCCTTAAGCGCTCTGATAGCGCTTTTTGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 164939-164111 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOA01000011.1 Lactobacillus taiwanensis strain 601c 601c_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 164938 36 100.0 30 .................................... ATCTAGTTGCTATTGGAACACGCTTCAAAG 164872 36 100.0 30 .................................... TTTTCTCCTTTACTAAACAAGGTATCTGCA 164806 36 100.0 30 .................................... ATTGACTGTTTATGATAGCCCTGCTTGGGA 164740 36 100.0 30 .................................... AAAGCATAAACCAGCTTATTCATGAGCTAG 164674 36 100.0 30 .................................... TAGAAGAGTTGCAAAAGTATGTCTAAATCC 164608 36 100.0 30 .................................... TCGTCTCTCTAGGCTGATTGGTGACAATCT 164542 36 100.0 30 .................................... GGTGTTAAGCATGAGACTTCCCACTAAAGC 164476 36 100.0 30 .................................... GTGCAAGGTGCTTCAAGTGTAAGGCATCCT 164410 36 100.0 30 .................................... TTAGTGGAAAACCAATGAGTGATCATGATA 164344 36 100.0 30 .................................... ACATATCTTAGAGTAAGTTGGTCACGCAAG 164278 36 100.0 30 .................................... TTGAATAAGTTTCTTTTTCAAAACCTTCTT 164212 36 100.0 30 .................................... GGAACATAACGACTCTAAAACTCAAACCAA 164146 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAGTATATACCTCTAATTATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTGCCACTAGAACTTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTACGGATAGTCTGGTTTATCCGAAAGATGCTGATCACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTGTCG # Right flank : GCCACTATTCCAGAACCAAACCCACCGTTAGTTTTAGATGGTTGTTAGATCAAATATTTACTCTTTATAGAAATCATTAGTATTAATTAAAATATTGATATTAATGATTTTTGCTTTTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGGCAGACCATGTTATCATTCCCTTTTGGTTTTATTTTTGGTCAAAATATATACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGGACAATAGAGCAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTACTTTATTTCTTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTTCCTATGCGAAATGGAACAGATTATGATTATTACTTTGATATAGTTGGGAATTACATAGCGAGCTCATTGAATGAAGCGGAGGAATTAAATGAGGACGGTCTAAGACTCGAGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //