Array 1 65796-63308 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZK01000014.1 Aliivibrio finisterrensis strain A46 NODE_14_length_105328_cov_66.3879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65795 28 100.0 32 ............................ ATGGCTAGGACCAAGCACAGCAAAGGCTTATG 65735 28 100.0 32 ............................ ACTAGCGCAAATTTGGACAATTTCCGCTAACC 65675 28 100.0 32 ............................ TTGTGTTTAGTTGTTGCAATAAGCTCCCTAGG 65615 28 100.0 32 ............................ ATTCGAGCAGCTTGAATGTACGCCTTATGTCT 65555 28 100.0 32 ............................ TCCTCTCGCAAAATTAGCAATTGCTAATTTAG 65495 28 100.0 32 ............................ AAGAAAACAGAAAACAGGCCAAAAACGGTTGA 65435 28 100.0 32 ............................ GTTAACTAACCATTGACCCTCAAATCCTTTGT 65375 28 100.0 32 ............................ AAAAGCCACGTAGTGTATGACCAAGAAATGGC 65315 28 100.0 32 ............................ GTTCAGCAATAAATCAATCGCACGACGATATT 65255 28 100.0 32 ............................ AGAACGGTATAAGCAATATCAAACCCATCAAC 65195 28 100.0 32 ............................ TGACGTTGGTAAATCTTGCTTGTTACTGGGTA 65135 28 100.0 32 ............................ ATGCTCATGAAAGAGATTGCAGCTAGGTTATA 65075 28 100.0 32 ............................ ACGTTGGAGAAGATGACTCTTATGTTGTTGTT 65015 28 100.0 32 ............................ GAGAACTACGCATAACCAGTACTTATCTTTTT 64955 28 100.0 32 ............................ TACGATTTTCATTTTAACGCCACATTTTCCAA 64895 28 100.0 32 ............................ ATGGAAAGTTTATGGGAACTTGGTTTGATTTC 64835 28 100.0 32 ............................ ACTGAGAAATTCAAAACTTGCTGTGGAAAATG 64775 28 100.0 32 ............................ CTTTAATTTCTTTAATTGGTTACATAACCCAT 64715 28 100.0 32 ............................ TGAAGCTTAAATGGTTATAAGCAGTCGCCTCA 64655 28 100.0 32 ............................ TAGCACTAAATAACCAAACAATGAGCAGTCGA 64595 28 100.0 32 ............................ TATTAATTCGTGATGGCCGTTAACTTGAGTGT 64535 28 100.0 32 ............................ TTCTTAGGGAATCCATTCAATTGGATCATTAC 64475 28 100.0 32 ............................ TTGTTCGCCCCCTTACAAATGAATTTGAAAGC 64415 28 100.0 32 ............................ TCTCATAATGCGCACTTAGCTACGGCTTCTTT 64355 28 100.0 32 ............................ TTTGGAGAACGGCCGCGAGGATTTAATCTAAA 64295 28 100.0 32 ............................ ATCCAGTACCAGACACCAGAAGTGACGTAGTA 64235 28 100.0 32 ............................ GGCTAAAGACGATCCACCACTTGTTACTCGTT 64175 28 100.0 32 ............................ TAATTCTCAACATTTCTGTCCTTACCCATCCA 64115 28 100.0 32 ............................ TTGCTGATAGATCAGATGATTTATCAACCAGT 64055 28 100.0 32 ............................ TTGACTACTACGTAGAATTTAACAAAGTTAGA 63995 28 100.0 32 ............................ GACAAGTGTGTAAGCTCGGCTGAATCTTGTAT 63935 28 100.0 32 ............................ CGCTACACGGTCAAGCAAAGGGTAGTGATGGA 63875 28 100.0 32 ............................ ACACTCAATCTGGTCTATAACCATGTTATTTT 63815 28 100.0 32 ............................ AATCCAAAGCGCAATGAAATCGGTATTGTGTG 63755 28 100.0 32 ............................ ATCAACTTTGCATCGATAGCTAAAGTGAATAC 63695 28 100.0 32 ............................ TTCCACAATGAAGATGATCGAGAGTTAGATTC 63635 28 100.0 32 ............................ TTGAGTTAATCCGCTTGGCAATGCTGCTGGAT 63575 28 100.0 32 ............................ AAGAAAACGAGATCCGATAATTTCATCACTCA 63515 28 100.0 32 ............................ AATAGACAGGCGATTGACGAGAACCAACCGAA 63455 28 100.0 32 ............................ ACCAGAAAAACCAAATAACATTATCTATATCC 63395 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 63335 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAGTTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAACATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCATCCATTCATTTCTGGCTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATTACGTTGTTTGGAAGGTGTTTAATCAGCTCTTTCTCCATCGGGCCTGAACCATAAATATGAAAAGAGTGATTAGGGTGTTTCTTTGCTAATTCGATGAATCTATCAGGGGCTTTTTCATGGCTTAAACGACCTACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76668-75380 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZK01000014.1 Aliivibrio finisterrensis strain A46 NODE_14_length_105328_cov_66.3879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76667 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 76607 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 76547 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 76487 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 76427 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 76367 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 76307 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 76247 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 76187 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 76127 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 76067 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 76007 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 75947 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 75887 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 75827 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 75767 28 96.4 32 ............G............... TAGACCGTAAAGCAATACCTAAGTCTGACCCA 75707 28 100.0 32 ............................ ACAAAGCATCCACGGTTCAGTTCTTACAACCC 75647 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 75587 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 75527 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 75467 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 75407 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //