Array 1 1262566-1259962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017638.1 Dickeya dianthicola RNS04.9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1262565 32 100.0 36 ................................ AGCTCCTCATCAGTTGCCTGCCCGTCAGCATGGCGC 1262497 32 100.0 35 ................................ TTTTTGTGAGTGCCTGTAGTCTTTATCTCAAGCCA 1262430 32 100.0 34 ................................ TCATTCTTCGAACTCTCGTTCATTCTCCTCTCTC 1262364 32 100.0 35 ................................ TCTCTCTATAGTGACAGTCTATTGAGTATTTGAGC 1262297 32 100.0 33 ................................ CCCACATTTACAATTTCACCAGCCCTGTGACGC 1262232 32 100.0 35 ................................ CAGTTCATCCGGCGTGTAAACGCCAAGCAGCACAT 1262165 32 100.0 34 ................................ TCGCTTTCCCGATGCGATCGGCAATCTCTGTAAC 1262099 32 100.0 34 ................................ AGTGAAACTGTAATCATGTTACCCCCATTAACCC 1262033 32 100.0 33 ................................ ATGTTCAAGCAGCTGTTCCCCTATCTGAACAAG 1261968 32 100.0 34 ................................ TTCGGCAAGTCTACTGACAAAGGCCAGGTGACTG 1261902 32 100.0 33 ................................ CGTATCAAGTTCCAGACCGAAATGGACGGCCAT 1261837 32 100.0 35 ................................ AAGATCATCGGTGGTGTTGTCGGGACTTTCCTCGG 1261770 32 100.0 34 ................................ AATCGCACCGAGAATTTCAAGCCAAGGGATTCAT 1261704 32 100.0 34 ................................ CTCTTTATTGTTGATCGTCGTTAATAATTCTACA 1261638 32 100.0 33 ................................ CTCTGTCGTGATTTTGGGAGTATTGATGACATG 1261573 32 100.0 33 ................................ ACTCCATCTGCTTTGGGTGCTGTTGGACATCGA 1261508 32 100.0 34 ................................ TATATGTGGGGCGGCAAGACCCTATATTACAACA 1261442 32 100.0 34 ................................ ATTTTAAACCCCTCTGGATATTGCCTATACGGCA 1261376 32 100.0 34 ................................ CTTTGATCCAGACCATCGCTGGTATGGTGTTGTT 1261310 32 100.0 35 ................................ TTGACTTCCTGCAGGATCTGCAGCAAGCGAATCTT 1261243 32 100.0 34 ................................ TTCAATATATCGGTCACGAAGGACAGACGGGGTT 1261177 32 100.0 33 ................................ CCTATCACGCTGATCCAGCTTCAGGACATGAAC 1261112 32 100.0 33 ................................ TTGTGATGAGCCAGGATGAAATCCAGATTTCAT 1261047 32 100.0 34 ................................ ATATTCCTGAGGGGTGCGCAGGTCACTCACGATA 1260981 32 100.0 35 ................................ TGGTTAGTTACGTTCGTGAAGCGGATCATTGAGTT 1260914 32 100.0 33 ................................ AACCATGCGGCGCAGGGTAACGTTGCCAATCAG 1260849 32 100.0 34 ................................ CCTTCAGATGATGTGTATGGTTGCCGGAATGCCA 1260783 32 100.0 34 ................................ TCGTGAGCCAGGCGATTCAGCTCGAACGTGAGGT 1260717 32 100.0 35 ................................ CTTTGATCCAGACTATCGGCGGCCTGCTGATGTTT 1260650 32 100.0 34 ................................ TGTCACATGTATTGTCAATTTAATTTACAGCGGG 1260584 32 100.0 33 ................................ GGTAAAATGCAACTGCTCGTAGCCCACGATCTC 1260519 32 100.0 34 ................................ AGAGTAGTAGCAGACTCAAACGCTTTCTTGCCGT 1260453 32 100.0 34 ................................ ATTTTTACCGTCACTGGCTGGCCTGGTGATTTAC 1260387 32 100.0 34 ................................ TATCTCCAGCATCACGCCGCCGATGCTGAACATT 1260321 32 100.0 34 ................................ TTTGGTGATAGCTTACCAATTTTACCCTCCGCCC 1260255 32 100.0 34 ................................ TCTTTATGCGTTAACAATCACAATGCCGTCACCG 1260189 32 100.0 34 ................................ CGCCACTGGCTCCCATGCCTTGCGATAGGTTGCC 1260123 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 1260057 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 1259992 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.5 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : TAACAGACACCCGGAGCGACCACCCCATGATGGTACTGATTACTTACGATGTCTCACTGGAGGACGCCAACGGCCCCCGTCGCCTACGGCAGCTGGCTAAAATCTGCCTGGACTACGGTGTACGGGTGCAATACTCGGTTTTCGAGTGCGACATTGACGCGGCACAGTGGGTAGTGTTGCGCCAGAAGTTGCTGACCACCTACGACGAACGGGTCGATAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTCGAGCATCACGGAGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCCAACTTCGGGTTCTCATCATTTTCCCGGCCGGTTGGCGCAACTTTATGCGATTGAATCATAAATGGTTTATCGCTTATTTCCGTCACTACACCGCCAATACCTTCTCGCAAACATGACGTTGGCGTTATCTCCGCGCTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3304446-3305571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017638.1 Dickeya dianthicola RNS04.9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3304446 28 100.0 33 ............................ TGAGTGCAGTAAGGTTAGAGGAGTAGGCCGAAA 3304507 28 100.0 33 ............................ CGGCAGGACGTGAGACCTTCCGAGTGTGTGCGG 3304568 28 100.0 33 ............................ TGAAACTTTTCCTTATTGATTCAGGCGATGTTA 3304629 28 100.0 33 ............................ TGGATGGTAAGTACTACTCACATAGCGCCACGG 3304690 28 100.0 33 ............................ TGCGCAAGATGTGCTGCAGTGGCTGGGGTACTA 3304751 28 100.0 33 ............................ CTTCGCAGCGCATCGGGCTTGTTCGGCCTGTAG 3304812 28 100.0 33 ............................ CTGCTTACCATCAGCGAGGTTCAGAATCTCTTC 3304873 28 100.0 33 ............................ CTCCCCATAAGTTGCCTGCCCGTCAGCATGGCG 3304934 28 100.0 33 ............................ CAGCGTGCAACATTCAGTACTCACGTTAAGGGT 3304995 28 100.0 33 ............................ CGGCTAGTGTATACGGTGTGTGATACCAAAATG 3305056 28 100.0 33 ............................ TCAAGCCCTGTCCTGGTATGACACCAGCAGCAG 3305117 28 100.0 33 ............................ TGAAATAGCTCTGTAAGCCTTGCTGTTACTGGG 3305178 28 100.0 33 ............................ CAGGAGGTACTAGTATGACTGTTAGACTGAGTA 3305239 28 100.0 33 ............................ TCCTTCAGCGCAGAGTACGGCGGATACATCTGG 3305300 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 3305361 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 3305422 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 3305483 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 3305544 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCGTTGTGCATTGATCTGGCATTTTCTCTCTCACGAGAAATGGCTGGCCACTATGATAAACACAAAGTATCTGACGCATTCAGGAAGCGAGTTATTGCCATTGATTTGCTTAATCAAATCACCGCAGATGTTAATGAGTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACCTGCCACCTGCGGTTCGTGGGCGTATGAAACTCTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCAGGTGTGAAAGACTCCGTGGCACAAACTGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTCGAAGTATTCCACAACCGCCAGGTTACGAAATTCGTTACAAAGGCGAGGTAAGAAAGCCAATTACTCATATCAGTGGATTGCAACTGATTATAGAAACCCTGAAATCCCTGTAACCCACAGATATAGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : CCGATGTCAACAACGGGTAAAAAGTGATCCACTTACCGTCACCACCAACGGTTTAATATTGATCCACCTTGTTTACTCAGGATTAGCTTCTGCGATAACCCCGGCTTTGCGTTTCTGCTTCAGTCTATAGCTCTCCCCCTTTATTTGTACGACGTGCGAGTGGTGTAAGATCCGGTCCAGCATCGCTGATGTCAGAGCTGCATCACCGGCGAACGTCTGATCCCACTGCCCGAACGGCAGGTTAGATGTCAGGATCATCGCGCTCTTCTCGTAACGTTTGGCGATGACCTGGAAGAACAGCTTTGCCTCTTCCTGACTGAACGGCAGATAGCCGATTTCATCGATGATGAGCAGCTTTGGTGCCATCACGCCACGGTGAAGCGTGGTTTTATAGCGACCCTGACGTTGCGCCGTTGACAGCTGAAGCAACAGGTCCGCCGCCGTTGTGAAGCGAACCTTGATGCCCGCACGCACTGCCTCGTAGCCCATGGCTATCGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3556801-3556292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017638.1 Dickeya dianthicola RNS04.9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3556800 28 100.0 32 ............................ TTGTTCTCGGTGGCCGCGGCCGCGGCGTTAGT 3556740 28 100.0 32 ............................ CGGAAGTGCGTTTCGTCTGCCAGCACGCGCAC 3556680 28 100.0 32 ............................ ACATCCCATTTTTTACTGCTGCGCTGCTGTAC 3556620 28 100.0 32 ............................ ACTTAAGATCCCACGGCCATACATCTGATGGT 3556560 28 100.0 32 ............................ TTTCTTTGTGCTCAAATCTGGCACTTCGTTGA 3556500 28 100.0 32 ............................ TGGACGGTTGCACTCTCTGCGCAGAGCTTGAC 3556440 28 92.9 32 ...........AG............... AGGTGCAGTCAGTGAAATTAGTAACAGAAACC 3556380 28 92.9 32 ........T..T................ CATTTGATGAACGGGCGGATCACTGGACACCT 3556320 27 89.3 0 .......................-..CG | GG [3556297] ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAAGAAGCCGGCTGGCGCAAAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCAGATGGTGCAAAGCACCGCACTGTGCGCCGCGTGCAGGTAAAAAGCAGCGCCGAACGCCTGCGCCGCCGGGCGGTGAACAAAGGCCGGATGACCGCAGATGAGGCGGCCACGCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCATGGCCCGTTGCAGGATAAACCGGTCGCCGGGGTATTCTCCAGCTACGGGTTAAGCGCCGTCGCCACCATCCCGTGGTTTTAACCCTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAAGGTTTTCCCGGAAAAACGGTGGTTTTTCTTTAACAATCAGGCAATAAGCGATTATTCGCTACA # Right flank : GGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGTGCGATGATGTGGCAAAGAAACGACACCGTTTATCCCGCACGAAACCATTCACCTGCCTGATATATATTCGCTAATCAATAACAAAACACCCCGGCTGTGTGTCAATAGCCCCATTTCCTGCATAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTATGGCAGCGAATGCGGCAGCCACGCGCTGCACGTTATGATGGTTTAAACCGGCGATGCAGATGCGGCCGCTGGCGATAAGGTACACGCCGAACTCTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3565516-3567465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017638.1 Dickeya dianthicola RNS04.9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3565516 28 100.0 32 ............................ TCTTCTGTGAGTTCGCGCACTTCAGACAATGT 3565576 28 100.0 32 ............................ GTGCCGCCGCCAATGCTGTCGCTGTCGCCGCC 3565636 28 100.0 32 ............................ GGTGAAGTGCATGGATTCTTTTTCCTGGCAGT 3565696 28 100.0 32 ............................ TTTACAGGCACGGGCATCAAAAATCTCTTTCA 3565756 28 100.0 32 ............................ TACAAAGTGGGTGTTGTGTGATTACGTTAAGT 3565816 28 100.0 32 ............................ GCCGAGACTACCGCCGATGCCGCTGCCCGTGC 3565876 28 100.0 32 ............................ ACCAGCAGTGAGAATATCGATGAGCTTTTCGG 3565936 28 100.0 32 ............................ TTAGTCAACTGCGCAGGGATAGCTTTAACAGC 3565996 28 100.0 32 ............................ AGATATATCCACACCAGCGGCGATGAGCATAT 3566056 28 100.0 32 ............................ TATGCTGCCCGTTCCGCCATCCGTGCTACCAC 3566116 28 100.0 32 ............................ ACCGATATATTCATCGTTAATAAGTTCATCAC 3566176 28 100.0 32 ............................ TGATTATGGTCGATGCTGCCAGCGCCAGAAAA 3566236 28 100.0 32 ............................ CGGTATCGTCGGTGCCGGTTCCTCCCCATCCA 3566296 28 100.0 32 ............................ GCGATTTAGTGCCCGCCGGGCGCTGATAGCGC 3566356 28 100.0 32 ............................ TATCGAGATGACATTGACAGAATGGGTTCGCT 3566416 28 100.0 32 ............................ ACTTCAACATCACCGGTATCAATGCGCCGTTG 3566476 28 100.0 32 ............................ CGGCGATTCAAGCGTGACAGCGCCGCTGGCAA 3566536 28 100.0 32 ............................ TGGTGGGTCAGTGCATCACCGTAAGGTCCCAT 3566596 28 100.0 32 ............................ CCGATCGATACGTGAGCACTGCTGACATAGTT 3566656 28 100.0 32 ............................ ATGCCGGAGATCAGCACCGGCCACCACAACCC 3566716 28 100.0 32 ............................ TGTAATATGTTTGCGGATGAGTAAACAAAGGC 3566776 28 100.0 32 ............................ TTCATATCTGCGAGAGCCATAATCTCTTATCC 3566836 28 100.0 32 ............................ AAATCAGACGCGCATTCTGTCGGTTGTCGGGA 3566896 28 100.0 32 ............................ GACGGGATGCCGAAATGGCGCCCACGGCAACC 3566956 28 100.0 32 ............................ TACGAGAAAAACAGCAATGTTATCGGAGGCTA 3567016 28 100.0 33 ............................ AGATTGTGAAAGAGGTTGTGGGTGTTGGCGGAT 3567077 28 100.0 32 ............................ ATTTGCGCCAAGAGAGCCGTGCGCCATGCGCC 3567137 28 100.0 32 ............................ CACCCGCGACGCCCGTCAGAATCTGACCTGAT 3567197 28 100.0 32 ............................ TGCCAGAAGTCTAACGTGCGGGCTGACACACC 3567257 28 100.0 32 ............................ ATGATTAAATTCCCCTCACTACGTCCGCATTA 3567317 28 100.0 32 ............................ ATGCGGGGTGGCGCATGAATATCTGTCAAGAC 3567377 28 100.0 32 ............................ CCACTCCGCTGATAGACGTTTAATCTGGCTGT 3567437 27 85.7 0 ....................G..-..CG | AG [3567455] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.6 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ATGCTGAAGATAATAAATATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAATCCGACGGGCTAAATACGTTATCCATAAAACGGGTTCTCTGTCGTAGTAATAAAGCAACACCACCCGCGAAATAACACGCAGGCTAATAATTAATTGGAAAACACGGATACCCTAAATAATTCGAGTTGCAGGAAGGCGGCGACGCAGCGAATCTCCGGGAGCTTACTCAAGTAAGTGACCGGAGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATACACTGGAAAATAACGAGAATTAACCTATCACAACCCAACCGGGAAAGTGAATGACGCCGAAAATACTTTTCTTATTTTTATACCCTTTTTTTCAGCCCCCTTTTTCAGCATTGAAAAATCAATAAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCACCAATTGCGGGTAGGAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGGTGAGCCGCACGGACGCGGCGAAAGCCTGTGCCGTGCTGGGAGCACGTTACCGGCGGCCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGCCAGCGGCGTAGTTTAGCCACCTAGCCAGAGGTCAAGGAGAGGCGGCGTTTGAGCCTCTCATTGTCGTGCGGGCGATGAAGTAGCAAAGAAACGACACTGTTTATCACGCACGAAACCCTTCACAGCACCGACATGTGCTCTCTATCCTCATCCGACAGTATTCCCTCCCCCACTCGGGGAGGGATATCCTGTCAGAACGACGTCCAGTCGTCATGGGTGCCGGCGGCGGCGGCACGTTTTTCGGTTACGCCCGGGCGAACAGCAAGCCGTGCGTGGGATAGCGCCGCCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCTGCCCTGCGGCGTCAGGCGGAATGCGCTGACCGCTTCGGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //