Array 1 163168-160637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOK01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163167 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163106 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163045 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162984 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162923 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162862 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162801 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162740 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162679 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162618 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162557 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162496 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162435 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162374 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162313 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162252 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162191 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162130 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162069 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162008 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161947 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161886 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161825 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161764 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161703 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161642 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161581 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161520 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161459 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161398 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161337 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161276 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161215 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161154 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161093 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161032 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160971 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160910 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160849 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160788 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160727 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160666 29 93.1 0 A...........T................ | A [160639] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181290-179675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOK01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712430, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181289 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181228 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181167 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181106 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181045 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180984 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180923 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180862 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180801 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180740 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180679 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180618 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180557 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180496 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180435 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180374 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180313 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180252 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180191 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180129 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180068 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180007 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179946 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179885 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179824 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179763 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179702 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //