Array 1 768951-770239 **** Predicted by CRISPRDetect 2.4 *** >NC_022246.1 Streptococcus intermedius B196, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 768951 36 100.0 30 .................................... TACGCCGTTATCAACTTGTAATGCTCCGCC 769017 36 100.0 30 .................................... TTTGTTTGTTTGCTAACTCGATAGGTGTTG 769083 36 100.0 30 .................................... TGTTACAACCTCTTAAATATATACCAGTTA 769149 36 100.0 29 .................................... TAGATAAAAAAATCATTACAAGTGACTAT 769214 36 100.0 30 .................................... CAAAATTATTACATTAAAACCCAAGGAAAA 769280 36 100.0 30 .................................... GGTAATCCTTACGATGATATTATAAACATG 769346 36 100.0 30 .................................... TGTTAGGAAAATCAAAAACGACATCAACAG 769412 36 100.0 30 .................................... TGCATAATAATAAAGAATTTATACAATACC 769478 36 100.0 30 .................................... TTTCGGTCATCGTACCACGGTTCGTAAGTT 769544 36 100.0 30 .................................... CACGGATGATTATATTGTAATCGGTTTAGG 769610 36 100.0 30 .................................... ATGTACTACTTTATTCAAGCGTTGATTTTA 769676 36 100.0 30 .................................... ACTTCCTTATTCAAGGAAAATGGACACACT 769742 36 100.0 30 .................................... AAAACGTCAAAAAAAGTCTGATTAATTGGT 769808 36 100.0 30 .................................... GCTGGTCAAAACGTGCCATTAAAGAATGGC 769874 36 100.0 30 .................................... TACTAAGGACAGACATTCCATATGCTACAA 769940 36 100.0 30 .................................... TCGGACAGCCTTTGACCTTTACTATCGATC 770006 36 100.0 30 .................................... TGGTCTAGGGAACACCCAAATTATAAACCT 770072 36 91.7 30 ..............................TCT... ATGATTTTTACACTGGCATTCGCAGAATTG 770138 36 88.9 30 ..............G...............TCT... AATACTGGTTCGACAAGAACTCAAATTCGA 770204 36 86.1 0 ..............G.............GT....CG | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGCAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAATAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACTTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : GTAGTATTAAAGCCACAAAGCTTATTAAACATTGTTTTATGTAAAAGAAATTTAATCAAATAGTTATCTATGCAAGATATTAGTGGAATTGTAATTTAGGTTGAAATGTTTTATAATGAAAAGGAACAAGTAATATTAGGGGGATTTCTAATGGAGAGAAAAATAAAAAAATCAGTTGTTGCGACTGGCTTAGCTGCAACGACAATCATTTCAGGTAGTCTATCACATCCAGTAAATGCAGAAGAAGCAAAACCAAAATCCACTGAACCAAAGACATCTGAAAAAATTACAAAACCAGTTACAGAATCAGATGTTCAATCAGCAAAATTGGAAGCAAATGCTGCGAAAGTTCAGAAAGATACGCAACAGAAAGTTGTAGATCAAGTAAAAGAGGATGTAAATACTTCAAAGGAAGCAGTAGCAAATAACAAGAAAGCCGTAGCAGATGCAGAAACAGAAAAAAATGCAGCGACCTCAGAAGTGATTAGAACTGCAAAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //