Array 1 4770-6255 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000024.1 Megamonas hypermegale strain An288 An288_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 4770 30 100.0 36 .............................. GTTTTATCTACGTGAGAATTAAAATATTCCATTACG 4836 30 100.0 36 .............................. ACATATGGATGTGAGTTGGACCTAACAGCATTATCT 4902 30 100.0 36 .............................. ATCTTTTTAGATTGCGAGAAAATCCCAAAGACTCAT 4968 30 100.0 35 .............................. ATTATTCGGGGTACAAGACCTCGATAATAAAATGA 5033 30 100.0 36 .............................. ACTGACTATCTGTATTTGCTGTTATTACTGCCCTGC 5099 30 100.0 36 .............................. ATTTCTTGCTGTTGTTTTTTTGCTTCTTGTTGTGCT 5165 30 100.0 35 .............................. TTGTTTGGTCTGCAAAAATCATCATAGACAACACT 5230 30 100.0 36 .............................. TCAAAACATTTTATAAAATTATCAACTTTACTTACA 5296 30 100.0 42 .............................. AGTTCAGCATAATTCTAATATTCCTCAACAAAATATGCAGGG 5368 30 100.0 36 .............................. GATAAATACAATATCGTATTCTCTTAATCCTATGAT 5434 30 100.0 37 .............................. TTTAAAGTTTCCTCTCTAACGCTTAAAAACTCTTTAA 5501 30 100.0 35 .............................. TTATTCCACCCCCTTTCATTCAAACATTTTGTAGT 5566 30 100.0 37 .............................. ATGAAACACATCAACCGAATACCTTCCAATTACCAAC 5633 30 100.0 36 .............................. AGTGCTTCACATGCCACTTTGTTTAACAAGTCCTCA 5699 30 100.0 36 .............................. TTGGATTTGTTTTTCCAAAATTTATCAAATCTGTCA 5765 30 100.0 35 .............................. TTTTTAAGCCGTTTTCTTTTTCTATACATAAAACT 5830 30 100.0 36 .............................. ATCTAAAACTATAGATGACTATTCAGCATCTGCAGG 5896 30 100.0 36 .............................. GTTATAATTCCTGCTTTCGAAAGCTCTTCTCGTAAT 5962 30 100.0 36 .............................. GGTCTAAGCTATACATAATATATTCTTTTATCTTAT 6028 30 100.0 36 .............................. TAAAGAAAAAGTAATTACATTGAGCATTGACAGAAA 6094 30 100.0 36 .............................. GCATTAAGCCAGTTTGGATTACAAACTGAAGATACA 6160 30 93.3 36 .......T..................A... CCATAATTAAAGCAATGTAGTATATAATATAAACAA 6226 30 90.0 0 A..........G..........T....... | ========== ====== ====== ====== ============================== ========================================== ================== 23 30 99.3 36 GATTAACCTTAACAAGAGTTGTATTTGAAT # Left flank : AACTTATTAAACAATAATTTTTCTGCTGATGAATTACAACAATTATCCCGCGATATACAAACTGATTACATCATCATTTTTAACGGTGGTAAAATCAATTTTTATAATGCACAAGGTGAAGAAATTTCCGCTGATGCAGATATGGATAAAATCGCTTTATATCATCAAACTAAAGATGTAAATATCGATATCACCCGTGAAATCGAAGTTCGCTTCACTGATTCTTATATCAATCGTATTATGACTAGCAATAATATATTTCAATCTTATATAGCTTGAAAACGATAAACTAAAAGAGCCTTTAAAGGCTCTTTTTTTATGCATTTTACCAGCCATAAAATAAACCTCTTATGCTAAAACCCTTTAGTTATAGGCGTTTATCGCTTTTTTTTAATAAATATAAAAAGATAACCAATCACTTGGTAAAAATAGATAAAAACATTGATAAATAAGGCTTTTTAGGATATACTAGAAAAAAGAAATCCAATATTTACATGGGG # Right flank : TTTTTCTAGCCATTTATATATAATTGTTATATTAACAAATTATATATAAAAAATACGAGGTGTTATAATGGAAAATGTAATAGACATTAGAAAAGTTATAATGGATATATGTTATCAAGATGGTGTTACACGTAGGCAAATACTAGCAGCATATAATAAAAAATATAATAAAACTGTAATGGAACCTGCTTTCAATAAAATGATTAATAATAATAATATAAAATTTAACGTACTCATCGATGTATTAGATAGTATCGGTTATAAAATAGATATAAAGAAAAAAATCTAATAATTTCATTGAATTTTATTTTATTAATACTTTATATGGCATTTTTTATTATTAACAATAACAACTATTATTTATACAAAAAACTACTGGAAGTATAATATTTATTTTTATAAGTATTGTACTTCTATTTTTTTATATAGTTTTATTATAATCTCATTAAAATTAAATTAATTTTAAATTATAATTTACGCTAAACGTAGAAAAGTATATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 78184-80852 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000003.1 Megamonas hypermegale strain An288 An288_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 78184 30 100.0 36 .............................. ACTTGTTCTGGTTCTAAAACCTCAACTTTATCAGTG 78250 30 100.0 37 .............................. TCAGCATACTCGCCTGCAATAATTGGATTACTCCAAC 78317 30 100.0 36 .............................. ATCAATAAAAAAAGCGTCTATTAATTAGACGCTAAA 78383 30 100.0 36 .............................. ATAAATCCTTTAATTCTTGTAATTCGCCATTGTATT 78449 30 100.0 36 .............................. TACGTTGCATGCGTATATAGATATCGCTGGTGGTTT 78515 30 100.0 36 .............................. TTTAAATTCTATATATTCGCCATGGGTTACATTTGG 78581 30 100.0 36 .............................. AAAGGTAAAAGGGAAGCACTTCGTGCTAATGAAAGA 78647 30 100.0 35 .............................. CTTGCTGATTGCTGGGCATTTTGTGCGGATTGGTT 78712 30 100.0 38 .............................. TCTGGATTCATTCGTTTATTATAATCTGCAAGCGTTAA 78780 30 100.0 36 .............................. TCAGCGGGGATTACACAGAACAGCAATGGCAGAGTT 78846 30 100.0 36 .............................. TTAAACTTTTAAGATGCTACGCATTTCACCGCCACC 78912 30 100.0 36 .............................. GTCATCACAGCAAATATCTCAAGATGTCTATAATGC 78978 30 100.0 36 .............................. GCAGCAAGCTTAGGCTTTGGTGTCGTTGAAGAAGGT 79044 30 100.0 36 .............................. GGAAAATCCTGAGGAACATTAGATTTACTTTCAGCA 79110 30 100.0 36 .............................. AATGGAAAGACTCAACTTGTTACCTGAGTTACCACA 79176 30 100.0 34 .............................. CTGCTGTTTTCCAGCCACGTAAAAACGGGTGGTC 79240 30 100.0 35 .............................. CTGTTTGAGATAATTGGCTAAGCTGTCCATTAGCC 79305 30 100.0 35 .............................. AAGAAAAGGAGCAAAAACAAATGAAAACATGTGAC 79370 30 100.0 38 .............................. TCATAGCGTTTATACCACTTTTGGCGGAGAAACTTCAT 79438 30 100.0 36 .............................. AAAAATTTAGTTGCTCGTTCTATTTGTTTTGGTGTC 79504 30 100.0 36 .............................. TGCGGATTATTATGGCATACTGCTTACCGTTAACCA 79570 30 100.0 36 .............................. TTAAGGTTTTTTAACATTCTAAGCAATGTCTTAGAT 79636 30 100.0 36 .............................. TATCCATTAACTTTCCAGTTATTTAAGATTGCTTCT 79702 30 100.0 36 .............................. ATATGAAACTAGTTCTCGTATTCCAAATGATGATAT 79768 30 100.0 36 .............................. ATATGAAACTAGTTCTCGTATTCCAAATGATGATAT 79834 30 100.0 36 .............................. ATGAACTTGGCGGAGAACAATATACACATTTACTAA 79900 30 100.0 37 .............................. GCTAGTTTAGGTAGTTCTTCTAATTCATCTAAATCTA 79967 30 100.0 36 .............................. ATATAAGGATTTTTCTTCATGTTTTTTCTAACTCCT 80033 30 100.0 37 .............................. GTATGTTATCAAGTAGTTACAAACCGTAAAGATAACG 80100 30 100.0 36 .............................. TGCTCAAAAAAAACACGTCATGAATAAAAAAGAATT 80166 30 100.0 36 .............................. AGTAGCTATAAGTGAAGTAGGCATTCCTGCACGATT 80232 30 100.0 35 .............................. TGAAGGTGCCGGAAGACCTAGGAAAGAAAATAAAG 80297 30 100.0 36 .............................. TATACCTAAAAAAAGCCGTTGCCTTAGATAAGTATT 80363 30 100.0 35 .............................. TTTGGCAAATAATTAATATCCAATAGCAAACCAAA 80428 30 100.0 37 .............................. ACTGCACGTTATATGCAGGCACTACCCCTCGCTTAGG 80495 30 100.0 37 .............................. TCGTAACTTTTAAACCAAGGCTGCGATGGTAAATTAT 80562 30 100.0 35 .............................. TAATATGAATTATCTATTAGAGAAAGATAATAATT 80627 30 100.0 34 .............................. AATGGTAGAGGATTTTAGAAAATCTATTGCTGGA 80691 30 100.0 36 .............................. TTTCGATAATGTAGAAAAATCGAGTGAGCCTTATTT 80757 30 100.0 36 .............................. ATACACGTTTGATGGCTTAATGCAACAATGTCTGGC 80823 30 96.7 0 ......C....................... | ========== ====== ====== ====== ============================== ====================================== ================== 41 30 99.9 36 GATTAATAGCAACATACGATGTATTTGAAT # Left flank : ATTGATATAAATACAAGAAAACCACTTTTAGGCAATATAACTGGTGGACTTTCTGGCCCAGCTGTAAAACCAGTAGCAGTACGCATGGTATGGCAAGTTGCAAAAGCTGTTAAAATTCCTATCATTGGCATGGGTGGTATCACTTGTGCTGAAGATGCTATTGAATTCATGCTTGCAGGAGCTACTGCTGTAGCTGTTGGTGCTTATAACTTCGTTGACCCATCTGCTTTAAAAGTTGTAGCTGATGGTATTGCAGATTATATGAAAAAACACAATATTGAAGATGTAAATGAACTTGTAGGAGCAGTACAAGCTTAAAATTGAGATTTTACCAGGTGAATTTTTGATAAATAGTTTATAAAGCTAGAAAATATAAGCTTTTGAAGCTGTTTTTTAGTATGGCTATAAAAAATCAAAATCGCCTGGTAAAATTTTTTCATATCCTTGAATACCAAGGGTTTAAAGATTATAATAAAAAAAGAAACCTTGATAAATAGAGG # Right flank : TTTAATCGAGTTTATAGCAGTCTTTTCTTCATTATTATGATTAATGAAACAATGATTATTTTATAAAAAGTTGTTGACAGCCTATTTTTATTGTGCTATAGTATTCACGTTGCATTTGTTAATGTGTTTTCAAGTAGAGGTCACCGCTTCTCACCTTATGGCGCGCAGTCAGTAGGGTTACTTATTAAAAATTAAAGTTATAATGTTAATTATTTAATTTGTAATATCAGAGGGTGACGTAGGTCATCCTCTTTTTTATCGCGAATATTATATAAAAATTTATAAATAATGAGGTGTTTCCTATTAGTAAAGAATCTTTAAGAGTTAATGGTGAAATCCGCGCTAGAGAAGTTCGTGTTACCGACGTAAAAGGTGCTCAACTAGGTATCATGTCTACAAGAGATGCTCTGCGCAAAGCGGAAGAAGCTCATCTTGACTTAGTTGAAGTAGCGCCAAAGGCTAAACCGCCTGTTTGCCGTATCATGGATTTTGGTAAATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAGCAACATACGATGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 83144-86739 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000002.1 Megamonas hypermegale strain An288 An288_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 83144 30 100.0 36 .............................. CCTGTCATGGCATAAGAATGGGAGCTGGCATATACA 83210 30 100.0 36 .............................. ATATAAGATGCTGAAGCCAAACTTTGTGAAAATTAA 83276 30 100.0 36 .............................. CAACACGGCATAAGCTGGAGCCACCCAATTATACGC 83342 30 100.0 35 .............................. GAATTAGCACCACTTATAAAACGAACAAAATCAAT 83407 30 100.0 36 .............................. GCATCTACATCTACCAAAGCCTTGAGCTTTAATTGG 83473 30 100.0 36 .............................. AGAAAAATGCAGACCGAGGATATTATTTAGAAGATA 83539 30 100.0 37 .............................. AAAAACGACATGACAGCATTATAAATGCACAAAATGC 83606 30 100.0 36 .............................. AATTTAAAGTGCCTAGCAGCCGATTTAAGCCATTTT 83672 30 100.0 36 .............................. ACTACAGGGCCGAGCTGTTGCAGTTTTTCCTGCGTT 83738 30 100.0 36 .............................. TTAACATGTTAATGTTTTTTTAAAATCTATATCTGC 83804 30 100.0 36 .............................. TCTGTAGTCGGCTCTTCAATTAAGTTAACTTTAAAA 83870 30 100.0 37 .............................. TACATTTAAAAATATGACCAGAGATACGAATGTACGA 83937 30 100.0 36 .............................. TCTTTATGGCAACGTCTTTTTTTTATGTGCAAATTA 84003 30 100.0 37 .............................. GACATCCGTTATTTAAAGATATCTTAATGATTAACAG 84070 30 100.0 37 .............................. ATTTAATTGCCATTGTTATTCCTCCATGTTACAATTT 84137 30 100.0 36 .............................. ATGCGTTCTGGGTCAACCTTTTCGCGTTTTTCGCCA 84203 30 100.0 36 .............................. GAAAAAGACAGGAGCATTTAATAAATATAGGCATAC 84269 30 100.0 36 .............................. TACTTGTTGTAAGCAGTTCTTGATTTACCACATAGA 84335 30 100.0 38 .............................. TACGCTATTACATAACCGCCCTCATCAAGGCAGTATAA 84403 30 96.7 36 ...............G.............. AACCACTTATTACACTTAGAATATGCACATTGTTTA 84469 30 100.0 36 .............................. GTCTACTTTAAATACCCTTCCCTGTGCCGGAAGTTC 84535 30 100.0 36 .............................. TTAGCACCAATTGACGTGGATGAGGATAATCCCCAC 84601 30 100.0 36 .............................. TAATTCCATATTTAAACATTAAGCTAATTAGAGAAC 84667 30 100.0 36 .............................. ATTATTCTGCCAAAATGAATTTACTCAGATATGCAG 84733 30 100.0 36 .............................. TCTTCTGTTTTACATCTTTTGACTTTATCTAAAAAA 84799 30 100.0 37 .............................. TGGGCACAAGAGCAAATAGAGAGCTGGTTAGAAACGT 84866 30 100.0 39 .............................. TTGATACTTTAGAGATACTTTTAATCTTCTCCCACTTAT 84935 30 100.0 36 .............................. TGGTACTGCTTGCATTGGCGTGGCGGAAACATTAAT 85001 30 100.0 37 .............................. CTCCTAATTAAACAAAAAGAGCAGGAATAAAACCTGC 85068 30 100.0 36 .............................. TTTGATTTTGAGAGTGGAAAATTAGAAGGTTCTACA 85134 30 100.0 36 .............................. ACGCCAAAATAAACGGCTGCTTCTTTTTCTTCTTGA 85200 30 100.0 38 .............................. TAGGTTCCGTCTCCTGTTTCGTCAGAACCGTCTACATT 85268 30 96.7 36 ................T............. TCGCTTATAGATAAATAATATCCTGGATTAATACCG 85334 30 96.7 37 ................T............. AAGCTCGATAGTTTAACAAGTGCGCAATCTTTGGATT 85401 30 96.7 36 ................T............. AAATTTGATTGTATTAATGAAATACTTTTGTTCATC 85467 30 96.7 35 ................T............. GTCTTTAACTGTTCTCGAATATCGATATTTGTTTT 85532 30 96.7 36 ................T............. TGTGCTGCTGGTTATGGATTATAGCAATTTGCATAA 85598 30 96.7 36 ................T............. AAAAATAAAAAATTATGACATGATGAAATTGTAATA 85664 30 100.0 36 .............................. TTTGAATAGTATTATTGTTTGCAGGTTTGTTTTCAT 85730 30 100.0 35 .............................. ACAACAACTTTTGCCAGCACATTTAACTTCACCAT 85795 30 100.0 37 .............................. TCTGTTTCTCCATCACCTTTAGCACCAAACTGCTTTA 85862 30 100.0 36 .............................. AAAAATAGAATTAAGTAAGGAGGAGCAACAAATTAT 85928 30 100.0 35 .............................. GAAAGGACAGAAAAAAGAATTGATGCCGTTTGTAA 85993 30 100.0 36 .............................. AGGTTAACTGTTGACATTAATAAACCTAATGAAGTA 86059 30 96.7 33 ................T............. AGATTTAAACCAATTATGCAATAACCTTCTTTT 86122 30 96.7 35 ................T............. TTGATAAAATTAATTTGTTTAAAATTTAATGTTAA 86187 30 96.7 35 ................T............. GTTTTAGATATATTAGGGTTTCTTAGAGCTTCCGC 86252 30 96.7 36 ................T............. TCGTTGCCCCGTTTTACTGAGAGGGCAGTGAGTGAA 86318 30 96.7 36 ................T............. TCAAGAATAAAATTGCTTTTCTCATACAATCACTTT 86384 30 96.7 37 ................T............. AGCAGGATAGATGCAAAGATTGCACTAAAAGTGTTGC 86451 30 96.7 36 ................T............. AGGAACACCATAAGAAATTGGGAACTTGGAATAAGA 86517 30 90.0 37 A.....T.........T............. TGTTAATATTTGATATGTTAATGACTGATGAAAATTA 86584 30 93.3 39 ......T...................A... CTCCAACGAACCTGATAAGTATTTTTACTGCCTAGTTGC 86653 29 90.0 28 ......T.....T...-............. AAAAAATAAACTGGTATTATTTATACCA Deletion [86710] 86710 30 80.0 0 .T....A.T.......TA........A... | ========== ====== ====== ====== ============================== ======================================= ================== 55 30 98.3 36 GATTAACAGTAACAAACGTTGTTTTTGAAT # Left flank : ATACCATTTAGTTTGAAGGCGGGATATTAATGGCTAAAAACTATAATTACAATTATGCTTTTGTATTTTATGATGTGAGTGAAAAACGGGTACAAAAAGTTTTTAAAATATGCAAAAAATATCTATTCCATTTTCAAAACTCGGTATTCAGAGGAGAAATAACTCCTTCTAAATTGATACGGTTGAAAAATGAATTGAAAAGTGTAATTGTTGATGAGGAAGATTTTGTTTGTATTATAAAACTGATGAATGATAATGTTTTTGGTGAAGAATTTATAGGTAAAAAAGATGTAGAAAGTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAGCATATGCTGATAAACCCTTATAAATAAAAGCGTTATGACTCATTTCTTTCATTGAAAAGATAAATGCACTATGCCTGGTAAATTTTACTTAAAATGTTGAAATATCAAGGCTTTTGAGCTATATTATAAAATATAAAGCCTTTAAAAACGAG # Right flank : TAAAGTTTTATACTAATTTTTGCTTATATCTATCCATTCGATAGCTTTAGAGTATTTTTCAAGCTCTGGAATAGTTAATTTTATAGCACTGTTTCGGCTACCACATGCTGGATAAACGGTATCAAATCGTTTTAGGGATATATCAAGATATACTTTTACGCCATCTTTTGGTGCAAATGGGCAAACGCCACCGATTGGAAAACCGGTATAGGTTTCTACCTCATCACCTTTTAACATCGTAGCTTTTTTGTGAAATTTTTCTTTAAATTTATGATTATCTATTCGTACATCACCAGCCATTACCACTAAAATTGCAGTATTGTTTAATTTGAATGACATTGTTTTAGCGATACGTGCTTCTTCGCAATTTAATGTTTGAGCAGCTTCAGTAACAGTTGCGCTAGAAGTTGGAAATTCCATGACTTTATCTTCCATATTAAATTGTCTAAAATATGCTTTTACCTTATCAATTGACAAAATAATCATTCCTTTATTGTATT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAACGTTGTTTTTGAAT # Alternate repeat : GATTAACAGTAACAAATGTTGTTTTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 14517-15368 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000012.1 Megamonas hypermegale strain An288 An288_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 14517 35 100.0 40 ................................... TCCTTCAATTTATTTATTTATATTATTATTCTTTTAGTTT 14592 35 100.0 39 ................................... TTATATTTGCAATTTCTTTGTTTAAAGTTAACATGATAA 14666 35 100.0 39 ................................... CTTTTATAAAAGCATCTCTTTGTTCTCCGTTATATTCTC 14740 35 100.0 35 ................................... TGCTACTGCTTTTTTAAACATAATACCATAATCTT 14810 35 100.0 40 ................................... TCTATTACCTCCTTATCAGAAGGCATGAAAAATCCTTGAT 14885 35 100.0 41 ................................... TTGCTAGTTGTGTAGAACGTAGCAAAATTAAAGTCGTATTT 14961 35 100.0 42 ................................... TGGAAACATCTTTTTCCTATCTGCTATAACTCTTTTAAGATT 15038 35 100.0 37 ................................... AATCAAAGATTCTAGTATATTTTTTAGAAGTGGTTTC 15110 35 100.0 40 ................................... AACATCGAAGTCGCCTCCGATGATTCGGTTTAAACCTTCT 15185 35 100.0 40 ................................... TGGCAAATCCATTAAAGCATCTTGCAATTTGTATAATTTT 15260 35 97.1 39 ...........A....................... CCTTCGAAGAGGTTGTTCATAGTATCTGATACACATATA 15334 35 94.3 0 ................A............A..... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 99.3 39 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : TTGGCTTTTCTCCCAAAATTTTATTGACAAAAAAGATAAAATCTTTTATTTTAAGTTTACAAGCCTTACATTATATATATCTTGCTTAAAATTTTTATTTTGGCATCTTTTTATAAATATTTTTTATTAAAAATCACATTTATTATTAATGCAAAATCTCAGTTGAAAATTCTGATAATCTCGATCATCATGCTCTCAGAACAAAATTTTGTAAGTTTTTACATTGCAAAAATCTTAAAAATAGGTTATAATAGCTTTAGTTGATTGAGTTTTTCTAAAAACAGCTCGTAGAAAATTCATTAATATTTATACACGACTGTTCCAAAAAACAGCAAAAAATGCCCTAAAATGGCAAAAAAATGGCTTCTCAGCCGCACCGCGCCACTACTGGGCTCGCGGCACTTTTTGAAGTGTTTAACAGTGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAACGACGCGGGTTCCAGGGCACAGG # Right flank : CCTCTGATTTTTAAAAATAAATCATTTTTCGCAAAATAATTTAAAGCTAGCCTTATATAAATAAAGGCTATTTTAAGAGGTGATTTATAATGTTTATATTAGGATTTGCGCTATTTGTTATAGCTATTGAAATACTTTTTCCTGATATTGATGATGATGCGGTGTATTGATAAAAAATTAAAAGCAGTATTGTTGCTACAATATTAAATAACGAAATTTAATGAAGCTATAACAATTTGAGTATTAACTCTTTTTGTTATAGCTTTTCTTCATTTTAGGCATAAAAAAGCCCGATATCTAAGATATCGAGCTTCTGTTTTATCTCATTTATTTATCTGCTTTTAAAGAGAAATCAAACCAATCTTTTACTTTTACTTCTAAATCTTTAAAATTTCCATTATCAACTATATACTTCACTCCTTCATAAATAAAAAATCCAAAGCCTAAAACTACGACACTCGTTTCACTGTATTTTATAACATCTCCTATTAATTTATTAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 17221-17983 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000012.1 Megamonas hypermegale strain An288 An288_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 17221 35 100.0 36 ................................... TTTTCAATCAACCCTTTTATGTAAAGAGTTAATTTG 17292 35 100.0 49 ................................... TTTTATTTGCTTTTGAATTAAATTTGTTACCATGCCTTTTAAGGCAGGA 17376 35 100.0 33 ................................... CAATAGTAGTTTTCATTTTGTATTACCTCTTTT 17444 35 100.0 35 ................................... TAATTTATATACTCTTCCCCTCTGCTTAGGAGAAA 17514 35 100.0 37 ................................... TTAAAAAAGGAAGAGATGTAACATTCGTATTCCTATA 17586 35 100.0 40 ................................... GCACTTGTTGTGCACGCTCCTCATTTATACTATGTTTATA 17661 35 100.0 39 ................................... TTTAATTTAGATATTATTAATCCGCTTAATATAAGATTT 17735 35 100.0 32 ................................... AACACACCTTTGACTGTTCCAACAATGTCTAA 17802 35 100.0 38 ................................... TAAGGATCTTTACCGTATACCTTGCGGGTAACTACTGG 17875 35 100.0 39 ................................... TTCAACTGTCAATTTCATGATAATAACCTCTTTCTACCT 17949 35 94.3 0 .................................TT | ========== ====== ====== ====== =================================== ================================================= ================== 11 35 99.5 38 GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Left flank : TTCTTCATATTGACAAAAGCTATAAAATCTTTTATTTTAAGTTTACAAGCCTTACATTATATATCTTGCTCAAAAATTTTATTTTGGCATCTTTTTATAAAAATTTTTCACTATAAATCTTTTTTATCAATAACCACATTTATTATTAATGCAAAATCTCGGTTGAAAATTCTGATAATCTCGATCATCATGCTCTCAGAACAAAATTTTGTAAGTTTTTACATTGCAAAAATCTTCAAAATAGGTTATAATAGCTTTAGTTGATTGAGTTTTTCTAAAAACAGCTCGTAAGAAATTCATTAATATTTATACACGACTGTTCCAAAAAACAGCAAAAAATGCCCTAAAATGGCAAAAAAACGGCTTCTCAGCCGCACCGCGCCACTACTGGGCTCGCGGCACTTTTTGAAGTGTTTAACAGTGCTCAATCGACCTCAAACCTGTTCTCAGCCGCAAACTGCATTTTCAGCCCAATAATGACGCGGGTTCCAGAGCACAGG # Right flank : TTAATAAAGCTATAACAATTTGAGTATTAACTCTTTTTGTTATAGCTTTTCTTTATTTTGGACATAAAAAAAGCCCGATATCTAAGATATCGAGCTTCTTTTTTTATTCGTTTATCATTATTCTACTAAATCAGGGTTAAAGCTTTCTTTCCAAGGAAGTCCCCATTTATTAAGTGCATCCATAAATGGATCTGGATCGAATTCTTCTACATTGTATACGCCTGGTTTTCTCCATTGACCATTCATGATGAGCATTGCACCAATCATTGCAGGTACGCCAGTCGTATAAGAAACTGCTTGTGAACCAACTTCTTTATAGCATTCTTGATGGTCGCAAACATTGTATAAATAATATACTTTGTCTTTGCCATCTTTTTTACCTTGGAAAATACAACCGATATTTGTCTTACCAACAGTACGAGGGCCAAGACTTGCTGGGTCAGGTAATACAGCTTTTAAAAATTGAAGTGGCACAATTTTATGACCTTCAAAATCAATAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAACTAGCCCCGTATATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.50,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 643-936 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000044.1 Megamonas hypermegale strain An288 An288_contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 643 30 100.0 36 .............................. AGCCTATCATTGTTGCACTTCGGCGACCTTCTTGAC 709 30 100.0 36 .............................. GAGTTATTGCTGCTTCAACAACCTTGCCCATCAAGG 775 30 100.0 36 .............................. GAGTTATTGCTGCTTCAACAACCTTGCCCATCAAGG 841 30 93.3 35 ............................TT AAATACAGCAAGAAGCTTTGACGATAACGGATATT 906 30 93.3 0 ..........................TT.. | A [935] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTAAGCATTAACATTGTACGGTCTCACGA # Left flank : ATAAAAATTTTTAAAAACTATGCCGAATTTTGGAAAAAGCAGGAGATATAATATATAGAATAGATATTAAAGAGGGTGATGAAAAAATAAACGAATATTAAACTTAAAGGTAAAATAAAATTTTTTGATTAAGATTGGAGTTAGTATTATGAAAAACAAAATAAATGAAATTAAAACAAAAATTTGTATTCCAAAGGGAGCTTTCGGTGGGAATTGTTCAGGTTGTCGGTATTGGGAAGAATATAATAGAGACGCAAGTGGCAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGCGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAATATCAAGTATTAAAAAGAATAGGCAGAAAACTGAAATCAGCTGGTAAAATTTCTATTAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : ATACTTTGTTAACTACATAATTTATAAACCAACTAGTTAAGCATTAACTTGGGTTGTAGGATTATGTTAAATGTATTTATGGTGAATTATTGATTAATATCAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACTGTGCCGAATTTTTGAAAAAGTAGAGGATATATATAGTAAAGATTAAAGAGGGTGATGAAAAAATAAATGAATATTAAACTTAAAGGTAAACTAAAATTTTATGATTAAGATTGGAGCTAGTATTATGAAAAACAAAGTAAATGAAATTAAAACAAAAATTTGTATTCCAAAAGGATTTTTTGGCGGAAATTGTTCAGATTGTATTTATTGGGAAGAATATAATAGAGCTTCAGATGGTAGAGCACATTGCAGTTATTATGATAATTGGTACTATCCATCAGAAAGACGAGGTTGCTTTGCTTATGAAAGAAACT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCACGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 64855-65146 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000014.1 Megamonas hypermegale strain An288 An288_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 64855 29 100.0 38 ............................. TGAAAGCATTGGTTTTTCTCGTAGCCTTAAAAGGTTAG 64922 29 100.0 35 ............................. AGAGCTTTTTAAAAGTTTTTTATAGATGTGCAGCT 64986 29 100.0 38 ............................. TTTATGTTTGTTATGTACGTGTTAGATAAAGATATCAC 65053 29 100.0 36 ............................. ACGTCCTTTCAATACTATTTTAAAATCCTTTTTGGA 65118 29 79.3 0 ....................AA.G.G.TT | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.9 37 GTTAAGCATTAACATTGTACGGTCTCAAC # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGATAAGCTTTTAAATTATGGTAGTGGGAATAGACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGATAAATAACGCTTTACAGAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATAATGAAGGTAAAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATGTAAATTGCAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTACCAGCCGAAAAAGTAAAAAACCTATAATATCAAGCATTAAAAAAAATAGGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGGAAAAGAATATTGATTTTACTGCG # Right flank : TAGATTGTAGAATAATGTTAAATGTATTTATGATGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 84-508 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000007.1 Megamonas hypermegale strain An288 An288_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 84 27 100.0 39 ........................... TATAAATCTAATTTATAAGTTGAACCCAAAAATTTTAAG 150 27 100.0 39 ........................... TATACCGCCACATCATTGAACTGCCTTTGAAAAAAGGCG 216 27 100.0 40 ........................... TATTTTTTAATTCGATAATTAAGTTTAATTACGGTTACCG 283 27 96.3 39 ..........................T CGCATATGCTACAGAGTAAAACTAACTGGCAAGAAGTTA 349 27 100.0 42 ........................... CGTTGACATATTCTGCTGCTGATATTGCATTCTATTCTGTAA 418 27 100.0 37 ........................... CGTCCAATTCCTTGCGAATATCATTTGTAAAAGCAGA 482 27 81.5 0 ....................AA.G.GA | ========== ====== ====== ====== =========================== ========================================== ================== 7 27 96.8 40 GTTAAGCATTAACATTGTACGGTCTCC # Left flank : TCGGCTGGTAAGATTTCTATGAAAGATTGAAAAATAAGGATATATAAGATATAATGAAGAAAAAGAATATTGATTTTACTGCGG # Right flank : ATTTAGATTGTAGTGTTGTGCTAAATGTATTTATGGTGAATTATTGATTAATATTAACAAGTGATGCTTATCAGTAAAATGAAAGAAGACATAACTTAGATTAAAAGTTATGTCTTTTTTTTATAAAATTTTTTAAAAATCATGCCGAATTTTGGAAAAAGCAGAGGATATATAAAATAGAGATTAAAGATGATAATAAAAAATAAATAGGAGATAGAAAAAAATATATAACATAGATAAAAAAATTTAAAAACTATGCCAGATTTTAGAAAAAATGAAAGATATATATATTAAAGAATTGATGAGGTGGTAATTATGAAAACTTGGATGAAAAATTTTATTTTATCAATATTGGCTATAATAGCAGTAATTATTTTTCATGAACAAATATGGCATGGTATATTATATGTTTTAAGTTTTTTTCTAGGTTTAATAATAGATTTTGTTAGTATTTTAGTTGTAATTGGTGTCGGTATGTATATTATCTTAGATTTACTTAC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 4228-4707 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000007.1 Megamonas hypermegale strain An288 An288_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 4228 26 100.0 40 .......................... GTCACCAAGTAGTGCCATACGTAGCATGGTAGATAATGCT 4294 26 100.0 40 .......................... GTCATTTTCACTAAAGAATTCTAAAATCTTATTTTCTAAA 4360 26 100.0 41 .......................... ACTATCAACTTTGATATAATCTATTGGTGCAGTGGATTAAC 4427 26 100.0 39 .......................... ACTACCGCAAAACTAAACAACATACAGTAAATGTCATAA 4492 26 100.0 38 .......................... ACTTTTCTAAATATTTTTTTCCAATACGACTTAACAAA 4556 26 100.0 38 .......................... ACTAAAAGAAGCCTTGCAAAATAAACACCAATGGGAAG 4620 26 100.0 36 .......................... GTCCACTTATTTATGTTCGACTCTATACTAGCATCT 4682 26 76.9 0 ..............A....TAA.G.G | ========== ====== ====== ====== ========================== ========================================= ================== 8 26 97.1 39 GTTAAGCATTAACATTGTACGGTCTC # Left flank : AGCAGAAAATAGACATAGCCATTTTCTTGACAATTACGCTGTAATGTTCGAGATTTAACAGATATTAAAATAAAAGAATAGCCGGATGAAATTTTCATTGGGCTATTCTTTTATCAAAAATAATATTTAATTTTTTATAAACTTAAAAAAATCATGCTGAATTTTAGAAGAAGGAAGAGATATATATAATAGAAAGAGATAAAGAAATATAGATTAGATTAAAAATAAGAAGGGAGAAATTATTATGGATAAGAGATTTAAGCGGTAGAGTACATTGCAGATATTATGATGATTGGTATTATTCATAAGAAAGACGAGTTTTGCTCGAAAAGATTGAAACAAAATAAAAATTTACCAGCCGAAAAAGTAAAAAGCCTATAATATCAAGCATTAAAAAAGATAAGCAGAAAACTGAAATCGGCTGGTAAAATTTCTATGAAAGATTGAAAAATAAGGATATATAAGGTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : GATTTAGGTTGTAGGATTATGCTAAATGTATTTATGGTGATTTTTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAAGACATAACTTAAATTAAAGTTATGTCTTTTTTTTATAAAAAATTTAAAAAAACATGCCGAATTTTGGAAAAAATAGGAGATATATATAATAAAATAATGATTTAAAAGAGAGGAAGATATTTATGAAAAAATTATTGATGGCTTGGGTTTTAGCGATTGTAATTTGTTTACAAAGTGGCGTTAGTATGGCTGCTACTGAAGATATGGCAAAAATAGATTATATAGAAGTAAAAGAATTAGGATTAAATCTTATAAAAGTTGAAATGCCTTTGGAAAAAGGTTTTGAAAGTATTTATGGACAAGATTATGCACCACTTACAATTATTGTTTACAATGATAAAAGCGATATGATAGCAATAGATGAACCTTTTGCACACAAATTGACATCTGAGAAATACGATTATGTAAAAGA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 10483-10844 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000007.1 Megamonas hypermegale strain An288 An288_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 10483 27 96.3 40 ...A....................... TCTGCATAATAATTATTTTACGGATGTTAGCGATATCAAT 10550 27 100.0 38 ........................... TCAAAATCCATGGTTAGGAATAAAAAATTACACCACTA 10615 27 100.0 38 ........................... TCGATGCTGTCGGCAGAAAAAAAGGTGGCAATTAAACC 10680 27 100.0 38 ........................... TCGACATCATAACCAAAAAGGCGATAAACGTGAAACGA 10745 27 96.3 46 ...A....................... CGCCTGTCCCAGCATTTTTATACCGTTCTTCGGTCGGCAGCCTGTA 10818 27 81.5 0 ...A........T...A..T...T... | ========== ====== ====== ====== =========================== ============================================== ================== 6 27 95.7 40 GTTGAGCATTAACATTGTACGGTCTCT # Left flank : TTAAATAAAAAAATTAATTTAACAGATGCTCCTAGAGATTTACGATGCTTTGTGGATTTTAAAATCTTATTAGAACGATATTTCTTTTGTGGCCATAAATGGGCAAAACCTAAAATAATTGTTTTTAAAGAGCCTGAAAGTTATTTAAATGATACTTGGCAGGATTTATATGCTGAATTTGTTGTTTTATTGCAAAAATATATAATTCCTAATTTGATTATAAGAACAGAAAATAAAGATTTAATGGCTAAAATAGAATATTATATAAAAATTCATGATAGTATAGCAAAGGTTAATCTATATGAAGCTGTAGCAAAAAATGATGGCTTTAATTTAAATGAGTTAATTGATTAATAAATAAAAATTACCAGCTAAAATGGATAAAAGCTTATAGATAAAGAACTTTTAAAAATTAATATTAGCTGGTAATTTTTTTATAAACCTTGAAAAATAAGGCTTTATAGGTTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TGATGAGTCCATCTATTGATATGATGTAATAGGCTGGATATGTTGTTTGCTTTTTAGTGATGTTATTTTATTGATTAATATTAACAAGTGATGCTTAATTGCAAAGAGAATAAGAAAAGACATAACTTTAATATATTTTAAGGTTATGTCTTTTTTTTATAAAAATATTTCTTTTTTATGCCGAATTTTGTTTTTAGTGGTGGATATTATATATATAAAGAAAAAATGAGGTGAAAATCATGAAAGCATTATTTGAATTTGTATGGTTTCTTATTAAGGTTTGCTTAATGATATTTGCTGGTGTTGTTTTTGGTGGTATAGCTCATTTTATAATTGAAAGTGAGTTGATTTTTGTTATCCTTGGCTTGATACTGCTTTATTTCTTTGGCCCATATATTTTGGAGATTGTGTTAATGTATTCATTTGCTAAGGAGATAAAAAAGGAGCTTGATAAGTAAAATGGTAAAAAATACGAAAGGAGGTGAGTTAATGTAAATTTG # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGCATTAACATTGTACGGTCTCT # Alternate repeat : GTTAAGCATTAACATTGTACGGTCTCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 31884-32382 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000015.1 Megamonas hypermegale strain An288 An288_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 31884 31 100.0 36 ............................... TTATGCTAATTTAACTACTACTAAATCTGTACTATT 31951 31 100.0 35 ............................... AAAAAAGAGCGGAATTGCTCCGCTCTTTTGGTGCA 32017 31 100.0 36 ............................... TCCTCCAAGTTCTTTTATTATAGTAAGGTGATTAAA 32084 31 100.0 35 ............................... TTCTTGAATTAGATTTAAATTTGCCGCTCTCTTTA 32150 31 100.0 36 ............................... AATATTATTTCTGCAACCACTTTGGTTTTTTGTTGT 32217 31 100.0 37 ............................... TCATACATCTCTACTAACCAAAAATCGTCTAATATAA 32285 31 100.0 36 ............................... GCAAGTTTAAGATTATACTCTTGGTCATTTAGTGCT 32352 31 77.4 0 ............T.....A.....TAAT..T | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 97.2 36 GATAAACCATAACAATTCGTTGTACGGAAAC # Left flank : GACAACAAAACACAAAAAAATATATTGTCAAGGAGTGATTTTTTTGAAGTATTGCCCAAATTGCCAGCAAATGGTCGAGCCAACCAAAAAAGTATCTTGGTTTCCACTGATTTTACTATCATTCATAACGGGCGGTTCATGGCTCATCATCTACGCTATATATTACTTTATATTTAAATCATCGGAATGTCCTATGTGCGGTGCTAAAAATTTAAAGAAAAGATAATTCCTATCCAAAAAAATCATCTAGTGCAATATAAATAAAAAACCTACTTATAAATTTATCTAAATTGCACTAGATATCTTTTATAGAACATGAATATCAAAAATTTACCAGCTTTAAAAAAATAAAAATGCAAAAAATCCTTTTATTTTATGGTATTTTAACAGATTTTTTATAAAATCATAAAAAATAACAAACACTTGGTAAAAATAACAAAAACCTTGTAAAATAAACAAGATTAAGCTATACTAAAAATACAAACCTTAATTTTACGAAG # Right flank : TTAAGTAGCCACGATATAATATCGTGGCTTTTATAGTATCAAATAAAATTTTATTTCAAATAAAAGTCAAAAAGTCAAAAATTTTTATTGACAATTTGACCTTTTGACTTTATAATGAGTTTAGTAAACAAAAACAAAGAGTTTACTATTACTTCTGACCATAATTTTATTAGAATATAATCATCATGATTGGAGGAATTCTTCATGGGTGAAGAAAAATATACACAAAAAGTTCTTGAAGCTATGCAATCTGCTCAGCAGGAAGCTGCGCTTCGCTATCATCAAGAAATAACGTCAGCTCATGTTTTAGCTGCTCTCATAAAAGAACCGGAAGGTTTACTTGCTACTATTTTCAGTGAATGTAGAGTCGATTTGCCAATGCTCAAGGCAAAACTTGAACAAATGCTCAAAAAAATTCCGAGCGTTAAAGGTCAAAGCCGTCTTGGCATGAGTACTGAAATGGTACGTGTTCTCGGTCGTGCTGCAAAACTCGCCGAAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACCATAACAATTCGTTGTACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 36389-36088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIW01000015.1 Megamonas hypermegale strain An288 An288_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 36388 32 90.6 37 .C.T.....T...................... GATTAGCCAGGAACACAAAAGATTTACTTAGCATCAT 36319 32 100.0 34 ................................ ATGTTACCGATGTTCTGTATCAATATACCTGGAT 36253 32 100.0 35 ................................ ACTAATAGTACAAATGCAGTTCAAATTGTTATAGA 36186 32 100.0 35 ................................ CCGTAAGACTGTTAAATAAAGGCTATATAGTGAGG 36119 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 98.1 36 ATTCAAAAACAACTATATTGTTATGGTTTATC # Left flank : TTGAAATGGAGACAATAATGAGCCATCAGATTGTCTTATAGCTTTTCGTAAATTTCTACTACTATCTTTTTGTTCGATTAAAACATGTGTTGATTCTATTATGCCATCTATAAAACTTGTATGATCTAGCATTACTTTATCTTCAAATTTTATAATTTTTTCAGGTTCTTCTACATCTAGTACATCTCTTAATAAAGATAACCAAAATACTTGGCTTTCTCCTTTTTCATAACCCTTGTCTTTCCAATATTCAACAAAAGTTTTTATTTTATCATTTTGTTTTATTTTATTCATAATTTTAAACCTCTAAATAAAATTTATTTCTTTAATATATATAATAAATTATTTCAATACTTTTACGCTTAATTATAAAAATACTATACTTCAAAAATAAAATAATTTTAAAGTATAGTTTTTTACATAATTTTATTAAATTTTTTATAACTAAATGATTAAAATTTATCTATTGAATAATTTAAATACTGAAAATCAATTAGTTA # Right flank : CCCTTGTAAAATCAAGGTTTGTAATTTCTAGTATAGCTTAAATTTATTTATTTGACAAGGTTTTGCTGATTTTTACCAAGTGATGAAGATTTTTTCTATTTTTATAAAAAATCACGATAAAAGCTTATAAATAAAGGGTTTAAAAATATTTACAATTTTTTTGTCTGGTAAATATAAAAAAGACTGAATGTAATCATTCAGCCTTTCGAGGATTTATTTATTAAGATATTTTTCTCTTAATGCTAATTTATGTTTCATAGCAGCGATAAAATCTTTCGCTCTTTGAATGTCATTTTCATCGGGGTGTTTTGCTGCACTTTCCCAGCGTTTTTTATTGCGTTCTGTAGCTGCATGCGGGTCATTTTTATCAGTATTATTTTGACGGCGAGCTAATAGCGCAGGATTTATCTTGCCTTGGCTGGAAAATGTTCCTAGTATAGTACAATCTTCGCCTAATTTATAAGCAGCACGGGCAAATGCTGTTACAGCGTGTTCACTGC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAAACAACTATATTGTTATGGTTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //