Array 1 267903-269517 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNZA01000001.1 Escherichia coli strain HH08-H NODE_1_length_349695_cov_192.579633, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 267903 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 267964 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 268025 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 268086 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 268147 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 268208 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 268269 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 268330 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 268391 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 268452 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 268513 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 268574 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 268635 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 268696 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 268757 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 268818 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 268879 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 268940 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 269001 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 269062 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 269123 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 269184 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 269245 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 269306 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 269367 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 269428 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 269489 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 285019-285778 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNZA01000001.1 Escherichia coli strain HH08-H NODE_1_length_349695_cov_192.579633, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 285019 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 285080 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 285141 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 285202 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 285263 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 285324 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 285385 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 285446 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 285506 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 285567 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 285628 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 285689 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 285750 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //