Array 1 1867564-1864669 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028292.1 Acidovorax avenae subsp. avenae strain INDB2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================== ================== 1867563 32 100.0 36 ................................ TTCGAGCTCTTCCCACGCATGTTCAAGTCAGGCCTC 1867495 32 100.0 35 ................................ AAGCCCGAGCCCAATCCGTACGTGCTGCAGCTGGC 1867428 32 100.0 35 ................................ CAGCCTTTCGCGGTCTTGCACCAGGCCCCGCCCTC 1867361 32 100.0 34 ................................ TTGCTCTTGCCGGTTCCCTTCTTGCCGGTCATTG 1867295 32 100.0 35 ................................ CGCAGCGACATAGCGCCGTGACCTAAGCCGTGATC 1867228 32 100.0 34 ................................ CACTTGACGGTGGATGGGGCGACGTCCTGCGCTG 1867162 32 100.0 38 ................................ ATCGACCTCGACAACCCAGACCTTCCGGCGGGCCTGGC 1867092 32 100.0 33 ................................ AACGGATCCCTCCGGCCCTATGCCGTGACCCTG 1867027 32 100.0 36 ................................ ATTCCCCACTGCATGGACTGCAGGGCGATGGCGAAG 1866959 32 100.0 35 ................................ TCGTTCCAGATCCCGGCGCAGTAAGCCGGCAAGGT 1866892 32 100.0 35 ................................ GTGACTACCTTTGATCTGTTGCGCTCCCGTGGGGT 1866825 32 100.0 34 ................................ ACAGCATGGGAAAACGGCACGCCATGCTATGAGA 1866759 32 100.0 34 ................................ AGCTTCGAGCTGACAACGGCACCAGCGACGGATG 1866693 32 100.0 35 ................................ TTGATGAAGTCGGCCAGGATGCGCCCCTGCAGCTT 1866626 32 100.0 37 ................................ ATGCAGTGCCGAGGGCCTTTGCGATGGCGGCGCGAGC 1866557 32 100.0 34 ................................ GTGCGCAACCTGCGCGGCGCCACGCTGTGAGGAC 1866491 32 100.0 34 ................................ TTGTAGAACACGGCGGGCGGCATGTCCTGCATGC 1866425 32 100.0 36 ................................ GTGCCACTGCGGCTACTGGACATGCCCCACTCCCTT 1866357 32 100.0 34 ................................ GTTCCGCCGCTCGAAGACCTGGGCCTGCGCCAGC 1866291 32 100.0 36 ................................ GTCTTCCAGCTCCATGAAATTGCCGACGTGTCGAAG 1866223 32 100.0 35 ................................ ACTGTCAAGTGTTTGAGCAGGGATGGCGCGTGAAG 1866156 32 100.0 34 ................................ TGGGCGTCGGTGAGACTGGCCGGGTCGACGTAGT 1866090 32 100.0 34 ................................ CACCGCCATGAGGGCCGCGGCCGGCACGGTGCAT 1866024 32 100.0 35 ................................ CCGACCATCACTCGCATCGATCTGGCGAAAGATTT 1865957 32 100.0 36 ................................ CACAGCGATGCGGCGCCAAACCGGTCTTCGTAGTCC 1865889 32 100.0 36 ................................ GGCCATCTCGGCCTTGGTCATCTTGGACGTGCGCTG 1865821 32 100.0 36 ................................ GTCTCCAGATATGGACGCATCACCGGGCAGGATCAA 1865753 32 100.0 34 ................................ TACCGCTTCCGTTGGAGCATCGTGCGGAACGACG 1865687 32 100.0 34 ................................ AGACATCGCCGCCTCCCATCTGCTTTCCGATCTG 1865621 32 100.0 34 ................................ AGTGGGATGCGGTCAACCCGAATTGCGAGCGCAA 1865555 32 100.0 35 ................................ AACGTCCTAGGCGACGGCTCGAAAGCCTGCACTGC 1865488 32 100.0 36 ................................ AATCAAGGTTGGGGAAGGCTCCCAACCTGGATATGC 1865420 32 100.0 34 ................................ ATGCGGTGCCGGTGGCCTTTTCGATGGCCTTCCG 1865354 32 100.0 36 ................................ TCGTAGAAGTCGAATCCACCCGTGCGGCCCATCATG 1865286 32 100.0 35 ................................ ATCAAGCGCGAGATTGAGCGGCTGCAAGGGACCGC 1865219 32 100.0 35 ................................ ACGCAAACGGCCACAGCCAGCTACAGCCCGTCCTG 1865152 32 100.0 36 ................................ CAGGCCACCTCGATGCTGCCGGCCAGCGGCTGCTTG 1865084 32 93.8 35 .........T..................G... TACGCGAGCTTCCAGCGCTTCCCGCCCTCGCTGTC 1865017 32 93.8 36 .........T..........A........... AATGCCGAGGCTGTTGTAGGTAACCTAGCCGTTGTG 1864949 32 96.9 34 .........T...................... TTGAACTTGGCGAGGTTGTTCTCGTGGCTCTGGT 1864883 32 90.6 85 ...................T....A.A..... GACGTGTCGCTGGAATCCTGCGAGAGGACTGCGTGTGCTTGGGTTAAAACTGCTCCAAACGTGGATCAGTGACGCGCTTTGCGAC 1864766 31 84.4 34 .......A.A...A............-..G.. TACCCCCTTACAAGGCGTAGGTCGGCAGGTCAAC G [1864750] 1864700 32 81.2 0 .........T..AT.......C.TA....... | ========== ====== ====== ====== ================================ ===================================================================================== ================== 43 32 98.6 36 GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Left flank : CGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGCCGGCGCCTTGAGGGCGGGCCCTTCCGCTCCCTCCCTTTCCTTTCTTCCTTCTTTTGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGGCAAGTGGTTGAGGGAAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGGTCGGTTGGGCGGGGTTCGCGGATGTGTGGGGGAAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : GACGAGAGGCGTCGCGGCAAGATGTCCGTTATCGGTCCACGCGCAGTGCGTGCGTGAATGCGACCAACCGCCCGACCTGCCCCGCCCCACGCATTTTCGGGCGCTCTCACATCGCAGGCCCGCGCACCCCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGACTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGGCCGGGCGGAACCCCAGCCTCGCGTAGGCCGGCGCGCTCCAGGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCGACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGTCTCGTGCCGATGCCCCTGCGCAGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGCCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCAGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGAGCCGCTCGTGTTCCGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //