Array 1 110008-107843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTN01000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50263 50263_c37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110007 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 109946 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 109885 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 109824 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 109763 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 109702 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 109641 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 109580 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 109519 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 109458 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 109397 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 109336 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 109275 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 109214 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 109153 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 109092 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 109031 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 108970 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 108909 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 108848 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 108787 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 108726 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 108665 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 108604 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 108543 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 108482 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 108421 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 108360 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 108299 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 108238 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 108177 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 108116 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 108055 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 107994 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 107933 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 107872 29 100.0 0 ............................. | A [107845] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129612-126553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTN01000037.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 50263 50263_c37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 129611 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 129550 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 129489 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 129428 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 129367 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 129306 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 129245 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 129184 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 129123 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 129062 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 129001 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 128940 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 128879 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 128818 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 128757 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 128696 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 128635 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 128574 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 128513 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 128452 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 128391 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 128330 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 128227 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 128166 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 128105 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 128044 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 127983 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 127922 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 127861 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 127800 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 127739 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 127678 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 127617 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 127556 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 127495 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 127434 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 127373 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 127312 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 127251 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 127190 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 127129 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 127068 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 127007 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 126946 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 126885 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 126824 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 126763 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 126702 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 126641 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 126580 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //