Array 1 262486-262668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000005.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_5.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 262486 37 100.0 37 ..................................... CAGGCACGGGCGGGTATCATTTCTCATGCAAAGAACT 262560 37 100.0 35 ..................................... ACCTGTCAATTATATCCATCAAGCAGGGTATGAAA 262632 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 100.0 36 GTTACATCCCTACTTCTGATAAATGTCACTCTTCAAC # Left flank : TTGATCTTGCCATGATCGTCGTGCAGGATCGAGAAGCTCCATGATTCCCTTGCCACGATCCTCTCAAGATCGCCGCCGCGCGTGAATACGTTCTCCTGGAAGCCGTCGCCGTACACAAGCGCATCTATGAGGCCCTGCTCCATGACGTAATCGAAATCGAAGCCCTCTAACCATTGCCATACATCGTCTGCAAGATTTTCGTCCTCGCCTTCGAGCCGCCAGCCGTTAGCGAATGCAAATAGGGCGTAAGTGTCTATCGCTTCTGCGAATACGCCGCCCTGTTCATATATCGTGCGGTATTTCTTCAGGTTCTCCTGATTCCGCATTCTCTCTGAGAAATAGTTGCGCCTGTTGCTGCCGCCTGACGCTATGTATGTCTTTGGCTGCGCTTCATTCTTGAAGGCTTGAAGTGCCTGCTTTAACCGGTTTAACACATTCTAAAGATTAGGATGAAGGTAAATAAAGCTGAAAAAAAAGGAATTGAGTCCAATACATCTCTT # Right flank : CACTACCAGCCCGATATCGGTTTTTTAGCCGAAATTCAGGCGTGCTGGCAATTTATTGAAATACTTATAAAGACAAGAAAACACTATTGCATAGACACAATATTATTTGCCTGATTTATAAGTTGATTAACTTCATATCCGCAGGACTCACATTTAAAGTTTTTGATACCTTTGATAAGCTGCGTAATCGCCTTCGCGGGTTTTTTCCCGTTCTTTTGCTTCGCACCACATGACGAGCATACAAGATCATTGCATTTGTTATATTTGATCTCTACAATCGGTATGCTTACCTGCATCGCTTTGTGCCTTAGGTAGTCCTGCTGCTGAACGACTGGCCACAGGTTCTTCAGGTAATTCAACTGCTTACCGAAGTTCTGTGTTATGCCATTGCCAACATCCCATAGCAGTATCTTGGGATTCTCTGACTGTTCCATGATATAATCTACCACCTTCCTTGATATCTGGTGATTATACGTGGATACATACCTCTGTTCTACGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCCCTACTTCTGATAAATGTCACTCTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 173892-169674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000001.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 173891 37 100.0 34 ..................................... TGATCTGAATACTTACCTGGCTGTCTATCTGCAC 173820 37 100.0 37 ..................................... ACCCCTCTATAATCCTTCTACGCATAAAACCCGTATG 173746 37 100.0 37 ..................................... ATAAAGCAAGGGATATAGCTAGAAGAGAAAAAGCAGC 173672 37 100.0 37 ..................................... TCCTTCTCTGCCTTTTGCGCCTCTTCCATCTTTTTGA 173598 37 100.0 36 ..................................... AGAAATACAGGCGACCGTTTAGATTTACGGTTTAGT 173525 37 100.0 35 ..................................... TGGGTAGCATACAGACGAAACCTTTTTTGAATGGT 173453 37 100.0 36 ..................................... CGAGGCACAGCAGACCGACCGGGAAGATTACAGCCT 173380 37 100.0 35 ..................................... TGTTTAGATAGATCTGTCTGGACTGTTTTTTTTGA 173308 37 100.0 37 ..................................... AGGGTGCTAACATGGGCTTATTCGATAACGTTTTAAG 173234 37 100.0 42 ..................................... TCGGGAGTCTGGGAGTCCTGTTCCTTATGCGAAGTACGAATT 173155 37 100.0 35 ..................................... ATAGCTAAATCATTCCTAACATCCTGAACCGAAAG 173083 37 100.0 36 ..................................... TGGAGCCACTACCCCTAACGTAATAGCAACATTCGC 173010 37 100.0 34 ..................................... TAAAAAAGAAGCTTCTTACAGACAGAGAGAGAAG 172939 37 100.0 37 ..................................... AGAAATGGGATAAACGATGTCAGGACTGTGGGAGCGT 172865 37 100.0 37 ..................................... ATAATATTGTCTATATCACCATCCTTCAGGCTATCGC 172791 37 100.0 36 ..................................... GAAAAAGCTGAGAAGTCCGGGGTTGTCGATACTACT 172718 37 100.0 38 ..................................... CCGTCTGTCCTGGTGGTACAAATATCGCAAGTCGTTTA 172643 37 100.0 36 ..................................... TAAAGACCCTGAGCCCTGAATCTCCTATAGTATCGC 172570 37 100.0 37 ..................................... GGGCAGTTTGGACATAGTGCAATCGTAGTCTCAATGA 172496 37 100.0 37 ..................................... ACTGTTTCCTGGTTTTCTGGTTCTTGATTTTCCATAT 172422 37 100.0 37 ..................................... CAAGTTTCTTTGGCTTCAGGTCGCATGTAGCATCTGA 172348 37 100.0 34 ..................................... TTATGATTCTCCAGTTTCCATCTGCCGTTATACC 172277 37 100.0 36 ..................................... AGGGCCTGATAATAATAGGTGTTTCGTTATGCGTTG 172204 37 100.0 35 ..................................... CTAGAGATCTTGTTCTTGGCAGATCCGGTTCTTGG 172132 37 100.0 33 ..................................... TTGTAAGGGATCCTACCAGGAAATTACCTTTTA 172062 37 100.0 39 ..................................... ACGGCTGTCTTACTGCGCTGTCGCAACGGCCCCGGTGCC 171986 37 100.0 38 ..................................... TCATGCTGAGTCTGTGCTGCAGCTCAACGACTTTCCTT 171911 37 100.0 38 ..................................... AAGCTGATACGCTAAGGTAGCCCCGGGGGCGTTGCGAC 171836 37 100.0 35 ..................................... TCGATGGAAGTTTCCTTGTCGGATCACTCCCCATA 171764 37 100.0 37 ..................................... GCAACGGCAAGACGCTTGCAAGCTATAGGGCAGAGGC 171690 37 100.0 35 ..................................... AAAAGACAGGCGGAAGAACTTGTAGAAAAAGGAGA 171618 37 100.0 35 ..................................... AAGGATGCGGGTAAGCCCGCATTACCTCCCATAGC 171546 37 100.0 37 ..................................... ATATATATACTATTGCATGTATGTAACCTGTGGGATT 171472 37 100.0 37 ..................................... CATCAAATTTCACACGAAAAGACATATGAGCACCATA 171398 37 100.0 35 ..................................... CTGTATCGGTCGAAAAACAGGTAGACCTTATACAA 171326 37 100.0 35 ..................................... TGTCAAATTTCACACGAAAAGACATATGAGCACCA 171254 37 100.0 40 ..................................... TCAGGTTGTTGGCTGGCGTTTAAATGTCTGAGGTTCTAGA 171177 37 100.0 35 ..................................... TGAGATCCCTCACGCACTCCTGGCATGTGATGTGC 171105 37 100.0 35 ..................................... GGGAGTGCTATCATACATCATACGCAGGTGATCCA 171033 37 100.0 35 ..................................... ACGAGCTCAACCGCCTTGCGCAGCACGGGATGCTT 170961 37 100.0 37 ..................................... ATTCGTTATCCATCTTTTAAAACCTCCTTATCCATCT 170887 37 100.0 34 ..................................... ACGAGGTACCTGCCGCGATGACCTCACGCGTGGA 170816 37 100.0 38 ..................................... ATAAAGATACATTTCTCCACTCACTGTTCAATACTGCA 170741 37 100.0 36 ..................................... AAAATGTTTGGAGGGTGAACAATACCAAGCTGCATA 170668 37 100.0 38 ..................................... GGAATGACGTGTCTTAGTGTTTTTTCCCCACTCCCAGG 170593 37 100.0 36 ..................................... TCATGAATAAATATAAATAAGTGTCACGGAAACCCG 170520 37 100.0 47 ..................................... GAAATTTGTTTGTGTGTATGGATGGTTGTAAAGGCATGCCTGGTATG 170436 37 100.0 36 ..................................... ATATACTTCACGGCAGCGTTAGCCGTTCCGCTATGG 170363 37 100.0 35 ..................................... GAATCAGGATACAGTTCGCTCATTTGCTCGATAAA 170291 37 100.0 36 ..................................... TCAATGTTAGAAAATGAAAAGAGTAGAATCATATCA 170218 37 100.0 36 ..................................... TGGTTGGGGAAAAACGAGTCCGCAGGAATGGCCAGG 170145 37 100.0 36 ..................................... TAGATAGTCGGTGATATAAATGGCAGAAGTATATTT 170072 37 100.0 37 ..................................... GCAGGAGGCATGAACCCCAAAAGATGCATAAACTACA 169998 37 100.0 35 ..................................... CTGGCGCTTCAGAAAGATAAGAATGCAACAGTAAT 169926 37 100.0 35 ..................................... TGGTTTCCTTATTTTTGATCTCGGTTCTATCTATA 169854 37 100.0 36 ..................................... GGCACTATCTACCCTGCTCGATTTGCTCGTTACGCT 169781 37 100.0 34 ..................................... CAGATGTTCTAAAGCGAACGAGGAAAGGGGTAGT 169710 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 58 37 100.0 36 ATTCAAGAGCGACATCCAACAAAACAAGGATTGAAAC # Left flank : GAAAAGAGCTGAATGTGTTCATCGCATCGAAAAAGAACCATATTAAAGGTATAGTGGATGAGGTTCTTTTCCTTGATGATGGGACGGCAGCACCTTTTGAATACAAGTTCGCAGAATTCAAGGATAAGATTTATCAGACCTATAAATTCCAGCTTGTCCTGCATGCTATAATGATACAAGAGAACTATAATATCAATGTTAAAAAAGGGTTTATATGCTTTACAAGAAGCAATAACCGAATTGAAGAGGTTAATTTTACAGAAAAAGACCTCAAGAGAGGAATCGAGATCATAAATGAGATCCTTGATATCATTGACAAAGGCTTTTATCCAGGTAAGACCAAGAATAAGAATAAATGTCTGGATTGCTGTTACAGCAACATCTGCATGTGATTTTCTTATCCTTATAAACCAATCAATAATTTTGCAGTAAGAATTTTAACCGCAAAAATTAAGGTATAATAATGCCTATTTTGCCCTGAATAGGCGAAAATTTGTGCT # Right flank : AGATTCTTATAATATATATACCTTGTGCCAACAACAGTACTTCCGATCGGTCGTAGTTCCGAATAGTATCCTGAATCATATTTGTGCTAAGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTCATTACCCCACATTACCCTACATTGTAATTCTTCTACTTTTCGGATAGGCTCTTAATCCGAACCTGCATGGTACCGACGAGCCTCATGGCGTGCAGCGCCGCCGCAGCGGTAACCGTCTTGTTATCCGAAGTCCAATACCGCCGGCCGGATCGATCAGACCCGCGCTCCCAGGGCATGCTTCACCGCTACGTCGATTCCCTCCAGCTCGTCCCGCGCCCAGGTGATGTGCGCATCGGGCCGAACCAGGATCCAACCGTGCTGCCCCCCGAGCAGACCGCTGAGCGAACCGGTCGGATCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAGAGCGACATCCAACAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 256452-260697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000001.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 256452 30 100.0 37 .............................. TCCTTAATACAACCTGCAGAGCTTATACGAGCTAACT 256519 30 100.0 37 .............................. GCAGCAGAATAAGTCCGTACAGCTCTAGCATGATAAT 256586 30 100.0 36 .............................. AAATCTACTCCCACCATCAGGGTACTGATAGGCAAA 256652 30 100.0 37 .............................. TTGTATTTTGATTGCATATATTTCATTTTATTATGAT 256719 30 100.0 37 .............................. AGTTCTGGCGCAGCGGCACAGGCTACAGCCCCGATAT 256786 30 100.0 37 .............................. AGGCCTTGACTGTCTAAAGAGTGCTGTAATTCATCTG 256853 30 100.0 37 .............................. CGATCTCGGCGCTTCGAAGATCACGATCAATATACAT 256920 30 100.0 36 .............................. GAGAAAATGGAGAATGGATTCCTGGGAGTGGGGAAA 256986 30 100.0 37 .............................. GGTTGTCTTGTTGTACTATATGTCATCCCTCCATACG 257053 30 100.0 37 .............................. TAGACAAGCGCATATACCCGCACCTGTTCAGGCACAG 257120 30 100.0 37 .............................. AATATCCCGCTAAGCTCTCCGCTATTGATTTTGCTTG 257187 30 100.0 36 .............................. TCGAAGGAGAATCAAAGACATGATAGAAAGCATAGA 257253 30 100.0 40 .............................. ATCAGACTGCGGGACAATTCGAGTTTGTCAGCGCGGGCAA 257323 30 100.0 37 .............................. GTGTCACCTCTCCTACTCCCTGCTCTTAAATCGATTG 257390 30 100.0 39 .............................. TGGGAGAGGGCACCCATTACTGGAAAGTGAGACCTTACA 257459 30 100.0 36 .............................. AATTACCCCATTCCTGAACAGCGCCTACACTATTGA 257525 30 100.0 36 .............................. GATATACGCGAAAGAATACAAAATGAGCTTAAACGG 257591 30 100.0 36 .............................. TTCTTCTTTAGTCCACTGATCCATCGACGGGGAATC 257657 30 100.0 35 .............................. GAGCATTATACGAGGGTGACGCCACAAAAAACGAA 257722 30 100.0 37 .............................. ATACGGGATTATACAGATGAGGATTTAGACCGTGAAT 257789 30 100.0 42 .............................. TGAGTACATCTTACAGGGTGTAACAATGTCAATCACCGCAGC 257861 30 100.0 36 .............................. TAAGCCCCGAAGATGCCAGCAGCGCACTTATAAAAA 257927 30 100.0 37 .............................. ATATTTAACCTCAATTATGTACCTAGTTGTTAAACTC 257994 30 100.0 36 .............................. TCTAAATAAGCTACAAATACGTTTGACGTGCCAGCT 258060 30 100.0 36 .............................. CTTTCCGTATAAGGCATTGCCCAGTTTTTTTGTGAG 258126 30 100.0 36 .............................. CAGGCTGTATAAGGGACGGTCTCGCCCGCTTAAAGC 258192 30 100.0 37 .............................. ATCCTACGATGATATACAACATTAGTTCGATTGTCTT 258259 30 100.0 36 .............................. AAAATGCTTTGCTGTACTATAGTACATGATGTACCT 258325 30 100.0 36 .............................. AATTACCCGTCATACATAACGTTACTGCAACTTGCA 258391 30 100.0 34 .............................. TGCTGTGAAAACCGCCCTTATTAATCTCTTCTGG 258455 30 100.0 38 .............................. GCGGACTATATCTATCCTGGGTGGCAAGGGTAGCGGGA 258523 30 100.0 37 .............................. TAAGGATTGTTGGGCGGCATACATGAGGGCATACAGG 258590 30 100.0 37 .............................. CATCATGACGAATGCAGCCCCTAAGCCAATTTGCTCG 258657 30 100.0 38 .............................. TCGCCAGACCAATCATTTATATCCAGAACAAAAACGGC 258725 30 100.0 37 .............................. GTCAGAATCTGCTGGCCTGCATCACTTGCGTCTGGAA 258792 30 100.0 38 .............................. ATAAGAGAGTGTGGCCGCCTGGCCTGTGTCTATGCTCT 258860 30 100.0 37 .............................. GCAGATTCTGACAGGGCAGATCATAGAGCGGGTCATA 258927 30 100.0 38 .............................. GAAAATCCCCATCACAATTGCAGCAATACTGATCGTAA 258995 30 100.0 37 .............................. TACAAAGCTAAATGACGCAGAAGAAAAGGCAACAGGA 259062 30 100.0 36 .............................. TTGTTATCGCTTCATTTACACATTGTATTTGGCTTT 259128 30 100.0 36 .............................. TACTCACCTCACAGCCCCTCGTCCTCTTCCCTCACC 259194 30 100.0 36 .............................. TCGGATGAGTACCAAACATCGTTCGCATACCCGCCC 259260 30 100.0 37 .............................. GTCTATTGTCTCTTTCTGTGAGGGAGTTAGCTCTTGC 259327 30 100.0 36 .............................. GTAGCCCATAAACGCCTTATATCAACCCTGGTAACT 259393 30 100.0 36 .............................. TTAAATCACCTCTTTTTTACATGCTTTGTTTTTTTC 259459 30 100.0 46 .............................. GGCTCTGATCGATGTAGCACTCAGGCTCGCAGATGTACACCAGCTC 259535 30 100.0 37 .............................. CGGTATTAAGGGCCGCGAGTGATCCAGCCACTACGGC 259602 30 100.0 37 .............................. TGAAATGGTAGAGGTCAGGAGGTGATAGCACGGAAAT 259669 30 100.0 36 .............................. TAGGGGCCTGCCTGGGTCCCATAGATCCAGGAACAG 259735 30 100.0 35 .............................. GGGGCTGCAGGGCAGCACGCTAAAATGCAACTTCT 259800 30 100.0 37 .............................. AATATTATTAGTGCGTTAGGATCTCCTGCAAATAAAG 259867 30 100.0 36 .............................. CAGAAAAAACAAGCGTTACCTAACTTTCCCGCATAC 259933 30 100.0 37 .............................. ATGTCTGCACCGCCTTAAGCTACCATGCTAAGATACA 260000 30 100.0 37 .............................. TAGTGGCCGCCTCCAAACCTGTTTTGCCCTGCAAGCA 260067 30 100.0 38 .............................. AGAGAGAAAGCAGAGATATCATAAAGATTGTTGGGCGG 260135 30 100.0 38 .............................. ATAGTACACCTCGCCCCCTTAATGCATAACAATCTCTC 260203 30 100.0 36 .............................. AGTACATCATTCTATGCGACTGATGCGCTTTTTCAG 260269 30 100.0 37 .............................. ATACAAAGTATGGCGTTGAGATCCCCACCAATTTGTG 260336 30 100.0 37 .............................. GAGGTCAAATTCCAGGATACTGTTTATAAGTTCTTTT 260403 30 100.0 36 .............................. AGATATCAGGGATGATTTACGGTCTGCGGGTATGGA 260469 30 100.0 36 .............................. TTGTAAGATTAAAACGCTCCTCAAGGTCGAGCAAAC 260535 30 100.0 36 .............................. CGCAACACCAGTGATCTTGTGTCTGGCGGTAGCTCG 260601 30 100.0 37 .............................. TGGGGCTTGAGGCATACAAAATATCAGACCCGATAGA 260668 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ============================================== ================== 64 30 99.9 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : CTTGTCCAGGATTTTGGCTATGCGATGAAGATGCGTGAAGGGGCAGATTATGGCTATGTATATAATGAAGATTCTGCGCAAGAACTGATAAACACAGCAAATAAAATTTATGAAGTTGCAAATCGGTTGGTATAATTTTATTTGCTTAATATTCTGGATGAATATCGCCACCCTTCTTCGTGCGCTCCCCTGCCCCGCCTCCACGCCCTCAACCCCCGCCATGAATCCAAAGACTGCAAAGTGCAGCCGAATCTTTGCGTACTTTGCGCGCTTTGCGGTGGGGCTTTTGTATTCAAATTTTGACGAAAACGTGCAAAAAAGTCGTGGATCTTTATAAAGGCAATACCAAACCTGACATCCACGATAAAAAGTTCCTTTTTACCAAAGGTTTTTGTGGAATGAGTTCGATTAAGATTTGAGGAAAAAACGATAGTGATTCCTATAAAATTGCTTTGAGAAACACCAGTGAATTAAGTCAAAAATGGGCTCAAAAAAGCTTG # Right flank : TATCTTGCATAGTTTGCGCTCACAGAGAGCTTTTTTGAAATATTTCTCTGCGCCTCTGTGCCTGGTATGAAAAAGTTCAACTATATCGCATCTTAGATTCCGATGTGGTTCAGCTAATATAAAACAACGAACTGGTACGAACCCGATACGAACTCGGGCTTATGAGTTCGTTTAAGTTCGTTTTGAGTTCGTTGTTAATCGTCTTTTTCATGTTCATTTATGAACAGCGTTCATAGCCGACTCCGTGACTGTTGTTTTTATATAGGTCGTGAAATTTAGGGCATTACTGGATTAGTAGGATAGGTTTTTATCATCATTCGATACTGTCTTACCGTCTAATTATTGGATGGGTTCGCATGACCTTGAGGAATTCTTTTTAAGCAATCCCTCCCTTTAGCTACCCGAATGAAAATCTCAGACTTGAATCTCCCGGACAGCGCCATTCAATTCTATCGGGATACAGGCATAACCGAGCTCTATCCTCCGCAGGCCGATGCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 414481-415452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000001.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 414481 36 100.0 36 .................................... GCTATATCACTAAATACTATATTCATTGCATTATTG 414553 36 100.0 36 .................................... ATGAAAAATGAACAAACAGTTGAATAACGACTATCG 414625 36 100.0 35 .................................... TCAACTGATCACCTTCGTTGAATTTGCATATAGTG 414696 36 100.0 36 .................................... TTGATCTCTCCCCACTTCTCGGATAGCCAATCTGCG 414768 36 100.0 35 .................................... ACAGTCTTTGCCAGTTTGACTATCCACCATAACTG 414839 36 100.0 40 .................................... TTTCCACCCTCGCCAAAAGCTGCTTTCATTACTATTTTCG 414915 36 97.2 34 ..................................G. ATATTCGGAGTTGGTGCACCGTTCGCTTTGATCC 414985 36 86.1 36 G.....A..G.........G........G....... GGATTTACGCTATACATAACTACCTCCAATTAAACA 415057 36 100.0 35 .................................... TCCTGCTTCGGCACCACTGTGCGCGTGAACCTGCG 415128 36 100.0 36 .................................... TCATATGAACTTATTACATCTTCGAAATCTATATCG 415200 36 97.2 38 ...............A.................... AGATGATTATCGTCATGAATCACAGGACACCTGATATA 415274 36 91.7 36 ......A..G.....A.................... AATTTAGGATTCTGTGATTGAAAAGTGAGGTTTATG 415346 36 100.0 35 .................................... TGATTATTGTAAATGTAGGCGTACTGTTCTTTGCG 415417 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 98.0 36 TTGAAAGCAAGACTCCAAAAAGAAGAGTATGGCAAC # Left flank : AAAGGAGCTTTTCTGAAATTATTGATTTACAGGCAGAAAAACTAGCAACCGCAATCCTTGAAACAGGCAAATACACCCCTTTTATCTACAGGTAGCCATGCCATCGAAATTTGTGTTAATTGCATACGATATCACAGATAACAGCCTGAGGAACAGGCTTGTTGATGTCCTCTTTTATTTTAATCTCCAGAGAGTGCAGTACAGCGTCTTTCTGGGGTATATCAGCGAGACGCATCTTAATCACATGGTCGAACAGATATATGATGATTTTGAGCATGAAGATGTGAAAATACTCATAGTAGAGATATGCAAAGGATGCTTTAAAAACATACGATCAATAAATTACGATATACCCAAAGAGGAGCGAAAACATCTTGTGGTCTGAGTTAGTTGGCTGATGTTTATAAATCAGTTCGACAGAACCACACCGCCAAATTTTCATATGGAAAAGAAGGCATATTATCAGAGGAAAAGTGATTTAAGAGATTAAAACTATACTG # Right flank : CTTATATGTGCCGTTCTTTAAGAGCGTGTCTTAAATCCTGTTAATCCTGTTATCCTGTCCAGAATATTCAGAAACGCTCTAAGCTTATTATTGAGAAAGATAAAAACCACAAAAGATTTATTATCTACGGCATTCATAAATGAAATAAAATTTTAAAATGGTGTTGTGTATGGGGATATTGAATAAAATCGGAAAGGTTATTGACGTATTGCTGGAAGAAGAGAACGAAAACTATGATAAAGGGGTTGAATTTGAGAAGTACGTGGCTAAGCTTTTTAATCAAAAGTATTTTAGCATCGCTGACTGGACAAGGGATTTATCCGGTAAACACGATATAAGGGTTGAATCAGATTCCAACCCGGATTTAACAGTTCGTTATCTACCAACTAATGAGAAAATCAGTGTGGAATGTAAATTCAGGTCAAATCTCTATAAGGGGAAATTGCGGTGGACATACGGGCTGAAGATAGAAGATTACCGCCTGTACTCAAGAGAAAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAAAGCAAGACTCCAAAAAGAAGAGTATGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 4 507292-504505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000001.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 507291 30 100.0 36 .............................. ACGGAAGCAGGCGCAGTTACTGCATGGGAGGGTGTA 507225 30 100.0 36 .............................. AAGATCCGGAGCTCGTTGATCAACTCGGGTATATCA 507159 30 100.0 36 .............................. TTAGAGGCACCAGCCGAGCCTGTATTTCTATTGAGA 507093 30 100.0 36 .............................. GAGGATTGGAAAGCTTTTAACAGAGTAGCTGCTAAA 507027 30 100.0 37 .............................. CCTTCTCAAGCTGTGCTTTTTCTCTGTCGAGCATGCT 506960 30 100.0 39 .............................. ATTTGCATGTTCAAACCTCGATTTTCGTAATGCGAACAG 506891 30 100.0 39 .............................. ACATGAGAAACGGAACCGCCATTATATTTGAAATTGCCT 506822 30 100.0 35 .............................. CAAGCTTAGCCGATGCAGGTATTTTGTCATCGAGG 506757 30 100.0 36 .............................. TTCAGATATATACGCCCCTCTACCCAACTGCCCAAA 506691 30 100.0 39 .............................. TAGTATCTTACGAAAGATATGAAGGATGAACGCTTTGGC 506622 30 100.0 38 .............................. TCTCTTTCGCCCTCTGCTCCTTCTGTAGTCGCTTCTGC 506554 30 100.0 37 .............................. AGACATAAGAAAAAAGTTTTGGGTTTTCTGGTCAAAT 506487 30 100.0 38 .............................. CTGAATACCCGCATACCTGGAGCGAAGGGCATAAAACC 506419 30 100.0 40 .............................. AAAACAACTTAAGCGGCACATCGTGGGAATATGAAACATC 506349 30 100.0 35 .............................. GCAGAAATATCTTTTGCTGTCTGCTGTGTACTAGG 506284 30 100.0 36 .............................. ATCGCAAAAGCCAGGATAGGGATTACATGTACCATT 506218 30 100.0 36 .............................. CAACAACGGATGCAATTAAGAAAGGGTTGTCTCGGT 506152 30 100.0 40 .............................. GTTGCCCATAAGCGACGTATGTCTACCCTGGTTACTGGAG 506082 30 100.0 36 .............................. CCGTTAACTCACCAAATTGAATTTGATATATAGTTT 506016 30 100.0 38 .............................. CCGTCGCCCCGTCGTCGCAGCGCACCATGCAGACGGCT 505948 30 100.0 39 .............................. GCCACATCAGCGACAATGCCACAAACAACCTCTTTTATC 505879 30 100.0 38 .............................. GTAGTTGGAAATATTACCGCAGACGGTTTACCGCCAAA 505811 30 100.0 36 .............................. GGGTGTATGCCCTGATGCGCCGCATCTTATCGAGAT 505745 30 100.0 38 .............................. CTCGTACGACTTGTAATAGGAGACAGGCTTGGCGGCGA 505677 30 100.0 37 .............................. TCGTGGGGGTGTATCGCGGCAGTTCGTACACTCTCGC 505610 30 100.0 37 .............................. GCACGATTGATTACTCATTAGGTTTCTTCCCCACAAA 505543 30 100.0 36 .............................. TGAAAAACCCACTCATAAAACGAGGGAATGATGTCC 505477 30 100.0 36 .............................. CTGCTCCGGGTTGTACAGGGCATTGCTCCTGATCTC 505411 30 100.0 37 .............................. GCAGGAACTCAAACGCTTTTGCCTCTAGCTGATATCC 505344 30 100.0 36 .............................. ATAAACCAGAGCAGAACTGCAAACACAAAAAATATA 505278 30 100.0 36 .............................. ACAGCAGCGACACCGAGAGTCGCTATGAGGATTACC 505212 30 100.0 36 .............................. GTCGATACCATGAGCCGTGTGATATACGGAAAAAGC 505146 30 100.0 42 .............................. CTCAGTTGCTATGTCACGGATCTCAGGCGGTATCATCTTCTC 505074 30 100.0 37 .............................. TTGAGCAATGAGGACAAGACCAACTTTTACAAGCTGC 505007 30 100.0 44 .............................. TGGACTGGGATATTTCAGACAGTTCCCACCCATGTTTTACACTG 504933 30 100.0 36 .............................. TTAGCTATCATAGCAGGGGCGGTATATCTCATAGCC 504867 30 100.0 36 .............................. AATGAAGGGGGCAAGTGGTTTGTCTGGAAAAAGCTC 504801 30 100.0 37 .............................. TTTTCTGCTCTGCATCTGCTCAAATAACAGCTTAAAA 504734 30 100.0 35 .............................. CCCCTGAAATTCTCGATTCTGACGTACAGGAGCTA 504669 30 100.0 38 .............................. TACGGAAAAGCCACAGTCCCACACTTGCGACAATCGCC 504601 30 100.0 37 .............................. TCCAAACTGATATACCAGATGGTCTTAAAGAAGGTGA 504534 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ============================================ ================== 42 30 99.9 37 GTTAAAATCAGACCTTAGAGGGATTGAAAT # Left flank : GGTGAAAAGGAATACAAACCCCTGATAATGTGGTGGTAATTCTGTACGTGGTAATTGTCTATGACGTAGGGGTAGAAAGAGTTAATAAAGTAAGAATTTACCTGAAGCAATACCTTAACTGGGTACAGAACAGTGTTTTTGAAGGTGAACTTACAGAATCCGAATATATGAGAATAATGAATCGTCTCAAAGAGATAATTGATGAATCACTGGACCATGTAATATGCTACAAGAGCAGGGATAAGAGATATCTTGATATTGATGAGGCTGGCACAAGGAAAGCTGAGATCTCAACTATAATCTGATTTCGGTTCTGAAAAGTCGTGGATCTTTATAAAGGCAATACCAAACCTGACATCCACGATAAAATATTTTATTTTACCAAAGGTTTTTGTTAGATGAGTTCAATTGAGATTTGAGGAAAAAACGATAGTAATTCCCACAAAATTACCTTGAAAAATACCAATATATCAAGTCAAATATGGGACTTAAAAAGCTTG # Right flank : TTCATCACCGGGATTTGATAATGAGCTAGTCTCGTTCGTGCAGCAGCATAACAGGAATATGCATAACTGGGACACATAAAAAGAAGAAAATGTCCTGCATACTACTCAGAGCTGCAAAAGAGGTGTAGGCAATCCCGGTTCATAATTTCCATGTTACATTTCTTGAATGGTATGGGTGATGAGATAGGAATTGTACTACAATAGCCAATCCGTAACGGTAATTGGAGGTAGAATCATACCAACTAGCTTGAGATAATGGCCTATATCGCATATGTAGTGTCGCTTTAGTGCAATAGTTCTCAAATGCTCAGCTGTATGGCATTTTGTATTAAACGGCTCTATTTCTACCTGTGACCTGCTTTGGGATTGAGCCGCAAGGACTGAAAAAATAGATATTTTTGTGGTGTATTAGGTCTATCAGTCCTTATATCACCATAGGTAAAAAGAGCATGTAAATGTAATGGTACTAACCTAATAGGATAATTTAAAACTGTTGTAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 5 514825-512580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMIY01000001.1 Candidatus Methanoperedens nitroreducens strain ANME-2d ANME2D_Contig_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 514824 30 100.0 38 .............................. GGTTAAAAAACATCATGGGCACCAGTACCAGCATGTTC 514756 30 100.0 37 .............................. TCTGCCGAGACCCTGGGGGCGGCTAAATTAGAGGGGT 514689 30 100.0 37 .............................. GCCTGTAATCGCGGTATGCCTGAACAGGTGAGGGTGT 514622 30 100.0 35 .............................. TTCTTTCACAGTAGGAGGTTCAAAACCCCATTTGC 514557 30 100.0 37 .............................. TGTGCAACACCACCAACAGCAGAAATTACGCCCTGAG 514490 30 100.0 36 .............................. ACGGCTTTGACCTGCTCCTTGCGGAGTATGGGTTTT 514424 30 100.0 37 .............................. ACGGGAATTGTGGCAGCAACGAGTTTCGCCGATGCAG 514357 30 100.0 37 .............................. AATCAATGTGGCTACACTTGAAAGGGATAGGTGTATA 514290 30 100.0 37 .............................. CCTAAATATAGAATGCCTGACCCACCACCTAAATATA 514223 30 100.0 36 .............................. ATACCAGGATGTAACATATCTAAAAAAGTTATGGGG 514157 30 100.0 37 .............................. TAAGGCGTGCTAATACCGTAGTCATCAGCATATACCC 514090 30 100.0 37 .............................. TGCAAGTATAAATACAACCCATAGTTCAGCAGGGATA 514023 30 100.0 37 .............................. CTGCGATTAGTAAAACTTATGGTGCGCCTGGCTGCGT 513956 30 100.0 39 .............................. GTAGAGGATATAATACCCTACATTGATTATATTTGATGT 513887 30 100.0 39 .............................. CCAGAAGCGACACCACCGCCTTTAACTACACCTACGACT 513818 30 100.0 35 .............................. AGGACTTCCAGCATGTCGCAGGTACCGAAATGGTA 513753 30 100.0 37 .............................. TAAAGGGTGTTGGGCGGCATACATGAGGGCATACAGG 513686 30 100.0 38 .............................. ATCTAAGAAGGCAGCAGCCACAATACCAACCAGGGCGG 513618 30 100.0 35 .............................. GGAGAAGGAACAACAACAATTAGTTCCATAATACT 513553 30 100.0 37 .............................. AGGAGAGGTCGAAGAGGTTACGTCCAAACTTGGCTAC 513486 30 100.0 36 .............................. GCACCCTCACGCTAAATTGCAGCCTGGCTTAAATTT 513420 30 100.0 37 .............................. GTAGAATCTGGAGAGATTAAATACTGGCGGGCAGGAG 513353 30 100.0 40 .............................. CGAAACAATAGGGCGGATTACTTCGCCCCTATAAGCTATA 513283 30 100.0 37 .............................. GTCTCATCAATCAGACTAGGATCTACCATCTGAATTT 513216 30 100.0 37 .............................. GCGGATTCATCTTGGTTATCTCTATAACTTTATTCTG 513149 30 100.0 39 .............................. TAATCTATAGACTGACAGGGGATAAGGATGTACTGAGAG 513080 30 100.0 36 .............................. GATGCAAGGAGTCTGGTGCTGCGCGGCTTCAATCTT 513014 30 100.0 39 .............................. ACGGTTGATGTGCCAGTTCGAGCCAACAATCGCATCAGC 512945 30 100.0 37 .............................. ACTACACGCGCCAGGTAGCCGTCACAGTGTTTTCGCC 512878 30 100.0 39 .............................. AAGAACACCAAAAGAATATGTAAAAAGTAGACCTGTCTA 512809 30 100.0 36 .............................. ACAAGAGGTTGGTAAAAAGGTAAAAAAAAAGAGGAA 512743 30 100.0 37 .............................. GGGATCCAGGATAGGGCTTTTTCTTGTGGTGCGGAAG 512676 30 100.0 37 .............................. TTTTTAGTGCTGTTGCTATCTTTTTCACACATTTTGA 512609 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ======================================== ================== 34 30 99.9 37 GTTAAAATCAGACCTTAGAGGGATTGAAAC # Left flank : AATATACGAGAATATAGTATCGATTTAATTAAGACCGTAAGAGCTTTATGCCCAGTTATTACTGAAAAACGAGTAAATATAAAAGAAATTCAAGTGAACGAAAACATAATATAAGTTTTTCACCCCGGCAAAAACTTGTCCTCTTCTCACCATGTCCTTACTTCTGCTCCCTCAGAGGCACGCGCTCCCCTGCCCCGTCTCCACGCCTTCAATCCCCGCTCTGAACACCACAAGCGCAAAGCGCAACTGGATCTTTGCGTACTTTGCGCGCTTTGCGGTGGGGCTTTTGTATTCAAATTTTGACGGCAACGTGCAAAAAAGTCGTGGATCTTTATAAAGGCAATACCAAACCTGACATCCACGATAAAAAGTTTCTTTTTACCAAAGGTTTTTGTGGAATGAGTTCGATTAAGATTTGAGGAAAAAACGATAGTGATTCCTATAAAATTGCTTTGAGAAACACCAGTGAATTAAGTCAAAAATGGGCTCAAAAAAGCTTG # Right flank : GAAGGCGGCAGCATCTTTTGTTTAACCTCCTTCTCTTACATTCTTAGTAATAACCGTCCTTTCCCCTGCATCACATTCCGCTGATCTATCCTCAATCCCCGCCATGAACACCAGAAGCGCAAACCGCAGCCGAATCTTTGCGGACTCTGCGCGCTTTATGGTGAATTCATACAAATTCTTGAAGTAGCAGGAAGCCCAGCTTCTATCAAGGCTTCCAGTTTTTCAAAAAATCAACCCGATCGAAATCTCTGTCGTTTGAAGCGATATGTTTTATTCCATAAATCTCACAGGACGCCGCATGAATAGCATCAGAAAATAAGAGGTTATACTTCTTCGATAGTGTTTTTGCATGTTGCAACACTTCTAAGGTGAGAGGCAAGATAACAATACTGGAATCAAATACATCATCAAGTGCGCCATAAGCAACATAGCACTCAGAGATCACATCCGGACGCTCTTTAATGAACCTGATGATATCGACATCTCCATATTTTAGCTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCTTAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //