Array 1 476996-478895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHP010000003.1 Salmonella enterica subsp. enterica serovar Singapore strain SGEHI2016-PSU-BS-170SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 476996 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 477057 29 100.0 32 ............................. GTCGAACCATGTATTTGCGTTACCGCTTGCAA 477118 29 100.0 32 ............................. GCTATTACGGCGACACCGCGCTTGTTGTCTAT 477179 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 477240 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 477301 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 477362 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 477423 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 477484 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 477545 29 100.0 32 ............................. TCCACCGCCTGGCGCTTGAAGGTGAGTTACTG 477606 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTAACCGG 477667 29 100.0 32 ............................. ACGGTGAGCCGCGGCTACATATCAAAGAGCAG 477728 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 477789 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 477850 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 477911 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 477972 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 478033 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 478094 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 478155 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 478216 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 478277 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 478338 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 478399 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 478460 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 478521 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 478582 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 478643 29 100.0 75 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTGGTGTTCCCCGCGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 478747 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 478807 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478868 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= =========================================================================== ================== 31 29 99.4 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495178-496734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHP010000003.1 Salmonella enterica subsp. enterica serovar Singapore strain SGEHI2016-PSU-BS-170SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495178 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 495239 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 495300 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 495361 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495423 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 495484 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 495545 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 495606 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 495667 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 495728 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495789 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495850 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495911 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495972 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 496033 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 496094 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 496155 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 496216 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 496278 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 496339 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 496400 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 496461 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 496522 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 496583 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 496644 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496705 29 93.1 0 A..............A............. | A [496731] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //