Array 1 68368-67546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGLU010000024.1 Escherichia coli strain ME2L-20-47 NODE_24_length_85039_cov_18.846241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68367 29 100.0 32 ............................. GATTTGTCGCCGACGAGGTTGACCCCGCTATC 68306 29 100.0 32 ............................. CGGCTAATGAAACCGGACGAGGGCGCGCTTAA 68245 29 100.0 32 ............................. CGTACATTTGAATTTTATATTCAAGCGGGCTA 68184 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 68123 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 68062 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 68001 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 67940 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 67879 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 67818 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 67757 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 67696 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 67635 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 67574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCAGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17666-18976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGLU010000051.1 Escherichia coli strain ME2L-20-47 NODE_51_length_28263_cov_18.767700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17666 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 17727 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 17788 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 17849 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 17910 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 17971 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 18032 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 18093 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 18154 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 18215 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 18276 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 18337 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 18398 29 100.0 32 ............................. GTATTGCAGAGCCTGATGGGGCATAAGTCGAT 18459 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA A [18468] 18521 29 100.0 32 ............................. GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 18582 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 18643 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 18704 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 18765 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 18826 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 18887 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 18948 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //