Array 1 1492-1988 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NFJY01000034.1 Lactobacillus johnsonii strain An197 An197_contig_34, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      1492	    36	 100.0	    30	....................................	TGGTAAAGGTAAACCTTATGTATGGGGTGC	
      1558	    36	 100.0	    30	....................................	CTATTGATAAGAATCCATTAGGTGAATTAA	
      1624	    36	 100.0	    30	....................................	TGGTAAAGGTAAACCTTATGTATGGGGTGC	
      1690	    36	 100.0	    30	....................................	AAGTTTGACATGTGGGACATGTAGGAACAT	
      1756	    36	  97.2	    30	...................................C	CAATAAGCCCACTAATGCAAAGACCATATA	
      1822	    36	  94.4	    30	.........G.........................C	AAACATTTTAGGTGGCGGTTCTAATATGTC	
      1888	    36	  94.4	    30	.........G.........................A	TTAAGAAAGTGCCCGGCGTAGATCGCTACT	
      1954	    35	  77.8	     0	.........G.............-..TA....CTCT	|                             	
==========	======	======	======	====================================	==============================	==================
         8	    36	  95.5	    30	GTTTTAGATAGTTGTTAGATCAATAAGGTTTAGATG	                              	       

# Left flank :   CTAAAAATATTTTAGATAAATATATACCTCTTATCATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGCACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTGTCG
# Right flank :  TTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGCTTTATTGAATTTGGAGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACTGTCTGTTAGCCAGACCATGTTATCGTTCCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGAATAATAGAACAGAAAAAATCGCTGATTGTAAAATTAAATTGAACACTTGATAAAAAATAAAAAGTCCATTCGGACCTGTTTGATAGAATGTTAATA

# Questionable array : NO	 Score: 6.02
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATAGTTGTTAGATCAATAAGGTTTAGATG
# Alternate repeat :   GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGAT

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:74.29%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.10,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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