Array 1 1492-1988 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJY01000034.1 Lactobacillus johnsonii strain An197 An197_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1492 36 100.0 30 .................................... TGGTAAAGGTAAACCTTATGTATGGGGTGC 1558 36 100.0 30 .................................... CTATTGATAAGAATCCATTAGGTGAATTAA 1624 36 100.0 30 .................................... TGGTAAAGGTAAACCTTATGTATGGGGTGC 1690 36 100.0 30 .................................... AAGTTTGACATGTGGGACATGTAGGAACAT 1756 36 97.2 30 ...................................C CAATAAGCCCACTAATGCAAAGACCATATA 1822 36 94.4 30 .........G.........................C AAACATTTTAGGTGGCGGTTCTAATATGTC 1888 36 94.4 30 .........G.........................A TTAAGAAAGTGCCCGGCGTAGATCGCTACT 1954 35 77.8 0 .........G.............-..TA....CTCT | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.5 30 GTTTTAGATAGTTGTTAGATCAATAAGGTTTAGATG # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATCATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGCACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTGTCG # Right flank : TTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGCTTTATTGAATTTGGAGATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACTGTCTGTTAGCCAGACCATGTTATCGTTCCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGAATAATAGAACAGAAAAAATCGCTGATTGTAAAATTAAATTGAACACTTGATAAAAAATAAAAAGTCCATTCGGACCTGTTTGATAGAATGTTAATA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATAGTTGTTAGATCAATAAGGTTTAGATG # Alternate repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.29%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //