Array 1 37405-38848 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123127.1 Streptomyces sp. ADI98-12 scaffold002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 37405 28 100.0 33 ............................ GGCGGGGCCAGAGCGGGGGGGTCCCTCCGGTCG 37466 28 100.0 33 ............................ CTGCTCATGCTGCGGGCCGGTCTCCAGGGCCGC 37527 28 100.0 33 ............................ CCCGTGGGCATCCGCCAGGCGGGCGGCTCGGAC 37588 28 100.0 33 ............................ GGACAGCGGCGACCTGCTGGCGCCGCCCGCGAC 37649 28 100.0 33 ............................ CCTGCGAGGGGGCGCGGGTGGACACCCGGGCCG 37710 28 100.0 33 ............................ GAGGACGGGCATGACGGCGTGGGAGAGGGCGCC 37771 28 100.0 33 ............................ CTTGGGGCCGGTCTCGACGAGGTGAGCGTTCAG 37832 28 100.0 46 ............................ CTGATGGCCGACCACCCTGGCCGACCACCCGGCCGCGAACATCATC 37906 28 100.0 33 ............................ TACCTGCACCGGTACGACAAGACCGCCGCCTGG 37967 28 100.0 33 ............................ CGCGGCGACGACGGGCTGGGAGCCGTCGACGCT 38028 28 100.0 33 ............................ GCGGCGCGAGCAGCCGCTACGGCGGCATGTGCG 38089 28 100.0 33 ............................ CGCCGCCCGCACCTCTTACGAGAGGCGCCTCCA 38150 28 100.0 33 ............................ CTCGCAGGTCACGCGCGGTTGAGGGGGGCAACC 38211 28 100.0 33 ............................ GCCCTCCGCCCCCTGGTGGCGGTTTCGTACTCC 38272 28 100.0 33 ............................ TCAGCGCGTTCAGGTGCGGGTGCCACCCGCCCG 38333 28 100.0 33 ............................ CTGGTCCGGTTTCCGGTGACTTGGACGGCTTGT 38394 28 100.0 33 ............................ GCCCGGTGCCGACGTTGAGGCGACGCTACTGAG 38455 28 100.0 33 ............................ CGCACGGGCCTGGTGGTCCGGCCGTCAGGTCCG 38516 28 100.0 33 ............................ CTGCTCCGTCAACTCACCACCGGCCCTCTGGCC 38577 28 100.0 33 ............................ GTGCAAGCAGAGGATGCCGCAGGGCGGCCACAT 38638 28 96.4 33 ......A..................... CTCGGCGCGCCAGCCGGACGGCGCCCGGGTCGC 38699 28 100.0 33 ............................ CGAGCCGGGCGCGGTCTACCGGATCTTCTGCCC 38760 28 96.4 33 .............G.............. GACGTCGCCGCTCGATGGCGACACGATCCGGAG 38821 27 82.1 0 .........-.GTG.C............ | T [38846] ========== ====== ====== ====== ============================ ============================================== ================== 24 28 99.0 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGTACCGACGACCGTCCGTTCCTCCTGGGCCGCAGGCACTGGCGATTCATAATGATCTTCGTCGCAGCCCTGTCCCTAATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGTCGCCCTGCTGCTATCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCAAGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCACCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTCCCGACCCACGAACGAAGGGTGACGCACATGAATGAAAACGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CACTCCGTGCCCCCGTTGCCACCCCGCCCCCGAGGCCGCTCCGCGCCCATGTCGCTGCCTATCAGGCGGAAATTGACCAGCTGTTGAACCTGAGATGATGACTGGCACCAGGTAGTTGGCGACCAAGCTCCCTGCGCAACCGCGGCGCCTATCACGTGCCCCTCCTTGGCCGTCGGGCTCTCTCACCGGTCAGACTGACCGCCTGGGCCGTCCCCGTAGGCTGTCCCTCCCCGACGCGCACCAGGAGTCCTGCGTCTGGTCGAGTACGTCGACAAGGATGACGCCGGTTGCCCCGGTGCAGAACAGCCGAGTCCCCCAGACTCTCGCGGTGTGCCCTGAGGAGGAAGTACGTGGCCGTTCTTGCACGTCACAGCCTTGTCGGCTCGATGGGCAGAGTCGGTGCGGCAGGCGACAACGCGGCCATGGAGAACTTCTTCGCGCTGCTGCAGAAGAACGTCCTCGACCGCCGACCCTGGCGGACCAGAAACGAACTCCCGATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47715-47238 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123127.1 Streptomyces sp. ADI98-12 scaffold002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 47714 37 100.0 37 ..................................... CCACCAGCCCGACGAGGGCCAGTGGTGGGTGGTCGAG 47640 37 100.0 37 ..................................... GGTCCATTCCAGGGACCGTCGTACGCGCGGACTGCGG 47566 37 100.0 36 ..................................... TCCCGCTTGAAAGCGACGACGCAGTAGATGTCGATG 47493 37 97.3 36 .C................................... ACCACGGCCTCGTCCATCTGCCGGACCCACTCCGTG 47420 37 100.0 36 ..................................... GCCTACACCGCCACCGTGCGCCGGGACCAGGTCCAC 47347 37 97.3 36 ..............T...................... TCCGACCATCGCGGTGACGCCGCCATTGGTGAGGGA 47274 37 75.7 0 ..........T.......A.A.........GAAGGC. | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 95.8 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCACCCGAGCCGCCAGCACCGTCCCCGCCTCCTTGTGCGGCACCCCCACCCGGCCACCCGACCCCTCAACCACCCCCAACCGCTCCTGCCAGGCACAACACCCCTTCCCCACGTCATGCACCAACCCCAGAAACTCCGCCGCCTCCCCCGCCCCGAACACCTCACCGAACCGCCGCGCCAGAGCAGCCGAACCCCGCAGGTGATCCACCAGCAGATGCCGCGCACCCCACGGATTCCGGCTGTGCGCGAACAACTCACGACCCGACATCCCGGCCCCCCCAACCGATCGACCACCCACCGAAGGCAGCCACCGTAAAGTGGACCACCGACACCACCAACCCAGACCACCCCGAAGCGACCAGCCAGGCCGCTTCGGAACCTGAAGCACACACACGACACGCCAATCACACCCAAGGAAAATGTCAAATTTGCTCGCAATTGAGCCTCGCTTAACTCGTGGTCGAGAGCACTCAGACAGATGAACCCCTGGCCAACCAGGG # Right flank : ATCACCAAGCGCGCCGTCGCCGCCTGGGAACAGTGGAAGGCGGCACGCCCGTGACTCACCCCGCGCCCGACCCGGCCGTGGTCGTCGAGGACGTCGAGGACCTCAAGGCGGCCGTCGTCGCCCTCACGGCCCAGCTCGGCGCCCTCGCCGGCGCTCCGCCGGGCCCCGGGCCGTCCTCGACCGGGCCGGACCCCGTGGAGGAGGGGTACCCCCCGTTCATCCTCCTGCTGGAGGGCGACGAGTACGAGGCCGAGCTGCGGGCCCTGGCCGAGTGGGTGGAGAGCGTCCTCGTGCCGGGCTACCTCGGCGAGGCTAGCCAGGACGCCCGCTGGTGCCACCAATGCAATCCCGAGCGCCAGCAGGAAGACCTCGCCACGCACCTGCGGGCCGCATTCGCGGTACTCGAAGAGCGCGTGCACGCAGGCCGCCTCGGCAGCTACGGCGTGGCCACCTGGTCCGGCTTCCAGGAGAAGGCGTTCACCGTCCAGCGGCTCGACCAC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.50,-20.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 56089-57795 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML123127.1 Streptomyces sp. ADI98-12 scaffold002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 56089 37 100.0 37 ..................................... CTCTCTTACTCCGGCGCCTCGCAAGAGGCCGCCGCGG 56163 37 97.3 36 ..........................C.......... TGCCGCCTGCTGCTCATCATCGACGCCGTACCCGCC 56236 37 97.3 38 ........T............................ TGGCTGAACACCTGCCCCAGCGCCCCCGGGGGGCGCGG 56311 37 100.0 35 ..................................... GACCAGCTTGGATGCACCCACGTGCAGGTCCGGGA 56383 37 100.0 34 ..................................... CGCCCTTCTGGACTCCTCGTCCCGGGAGGTGCCT 56454 37 100.0 36 ..................................... ACGGCCCTGGTCGAACAGGTCTACCCCGGTTACCTG 56527 37 97.3 36 ....................G................ TCTCCTGACGATCGATGGGGCCGCCGGTCGGCGGTG 56600 37 97.3 36 ......................G.............. CCATTTTGGGCATGGGCGGCTTCGCCGGCCTTGAGT 56673 37 94.6 37 ................A.....G.............. GCCCCTGCGAGAGACGACCAGCCCCTCATCCTCCAGC 56747 37 100.0 37 ..................................... GGCAACGTACGCAGGAATCATGAAGGCCACCGTGAGG 56821 37 91.9 35 ........T.....T.......G.............. TGCACGTGCGCAACCCAACCGCACGCCGCCGCCAA 56893 37 97.3 35 ......................G.............. TTGCGCTCCGCAGGGGTGCCGTAGTCGGCGGCGGC 56965 37 94.6 37 ...................A..G.............. GGTACAACCGGCGCTGGGAAAAGCCGACTCGTGCAGG 57039 37 91.9 37 ....T.................G..A........... AGGAGCACGGAGGCGCCACCCGTGAGCACCCGCAGGA 57113 37 94.6 35 ..........T.....A.................... ATGACTGCCGACCGGGCCCACTCCGTGAGGATCAG 57185 37 97.3 38 ..........T.......................... CAGGTAGGTGATGGCCGGCATGGTGCTGTCGTGCGGGT 57260 37 94.6 35 ..A.......T.......................... AGCGTGCTCTACCGGCCCCTGCCGGCCGGGCAGTC 57332 37 94.6 36 .......A..T.......................... CGCGTCGCCGGGCACAAGGCCGGGGAGACCCGGCTC 57405 37 94.6 36 .....................A.......G....... CTCGGCGGCCGTCAGGACGCGAAGCCCCCGCGCGGG 57478 37 89.2 36 ..................A.A.G....A......... GCACACGGGCCCATCACCTGGCTCACCGGCCACGTC 57551 37 91.9 35 ..................A...GT............. TCGCACATGACCACTCGTAGCGGTGCACCTCGGTG 57623 37 94.6 27 ...............G......G.............. GTCAGCCCGTCAGGTACGTGATCCCGG Deletion [57687] 57687 36 83.8 36 A.........TT....-...........A.....C.. ATCCCCGGCGAGCCAGCCGTCCGCACCGGCTGCACC 57759 36 86.5 0 C......-G....................G......A | T [57770] ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 95.0 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : CACGCATCCTGGCCCGACACCTCCGAGGAGACCTCCCCGGCTACCTGCCCTGGATCGCAGCCTGATGGAACTCCTCCTCACCTACGACGTCGATACCACCACGCCCGAAGGCCGCCGCAGGCTCCGCCGTGTCGCCAAGCTCTGCGAGGGACACGGCATCCGCGTGCAAAAATCCGTCTTCGAGATCATCACGGACGACCAAACCCTGCTGCAGCTCACATACGACATCGAAGACCTAATCAACACCGAAACCGACAGTGTACGGATCTACCGACTGCCCCACTCAGGCACAGAAACCGTCCAAGCGCTCGGAGCGGCAGCACTTCACCCACATCACAGCGACCTGATCCTGTAGACAACGGCACGCCCGCTTCGGAACCTCAAGCACACACGCGACACGCCCATCGCACCTAAGGAGAATGTCGGATATCTGCGCGAATGGGCATCCTTCAATTGGCTTTCGTGAGCACTCAGACAACCAAACCCCCTGGCCAACCAGG # Right flank : AGGCCGAGCTTCACGGCCTTTCGGCACCTCGCACAACCCTTAGAATCTCACGCCATGCGACGCTACAGACACTCAGAGCAGCGGGTGCCGACGGGCCGCCCGTACCTTCTGAGGGAGGTCTATGACAAAACCCCCAGCATCGACGACCGAATCTGCGCTCTCCCCGACCCCGCCGATCCCACCGAGTACGAGGCCATCGCGGACGCCCTGTGGGACCTGTTCCTGTCCACGAGGAATCTGGCGGAGCAGCGCAGCGGCACCGGTTGCACGCGTCACCCCGATGGGCCTGTCGACACCGAAGCCCCGGAGGACTGGGGGTTCTGCTTGCTCTGCAACACCAACCGGCGTCGGGGACAGCCCAGTTCGACCGCAGCGCAGAAGCCGCCCAAGCACGTCTGGGCCGTTCCGCCCCCTCCCTACACCCACGGGGCGCTTCTCCAGACGCGCCGATCGCTGAACGACGCGCTCCTCGAACTCAACTACCGGGCCCCGGACGCTTC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //