Array 1 1594791-1585855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017696.1 Bifidobacterium asteroides DSM 20089 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1594790 29 96.6 32 ............................C TCGCAAAAACCGACCCGGCTATAAAGGATATC 1594729 29 100.0 32 ............................. CAGCACTTGTATAAGGTTGGTGAATTCACTAG 1594668 29 100.0 32 ............................. GAGTTCATGCAAGAGCTGTATGCTGGTGGCGG 1594607 29 96.6 32 ............................C CGAAGTTTGTTGGCATGCAGGGTCCGTTTGAG 1594546 29 96.6 32 ............................C AACAATCGCCACAGCCACCATGCACAATATGA 1594485 29 100.0 32 ............................. TCAGCTAACAACAGTTCCTTATCGTTGTACTG 1594424 29 100.0 32 ............................. ATGCCAGCCTGGAACTCACGCCAGCAGTGTCA 1594363 29 96.6 32 ............................G AGTTCAGGCGGGAATAGCTCATTGCCGATGAT 1594302 29 100.0 32 ............................. GCCGGAGAAACGCCGTCAGAGCTGTAGCAGTC 1594241 29 100.0 32 ............................. GACCTTTCGGCCATCTGTGCATTGTTGTATGT 1594180 29 96.6 32 ............................A CGGGCGCCCTAATCAACAGCGGCAGATACAAC 1594119 29 96.6 32 ............................C CTCTGGTGGTAACGCTCAGAGTCCCGTGACCA 1594058 29 100.0 32 ............................. AATAAGGTCTCTGCACACTTCATAACCGATTT 1593997 29 100.0 32 ............................. CGTAAGTATTTTCAGTGGTCTGGTTCATGTAG 1593936 29 96.6 32 ............................G GGTCACAGTACGCTGCCAATGGCATGATGATT 1593875 29 100.0 32 ............................. TTTCTTGTAACAATTCCTGATCTATGTCTGTC 1593814 29 96.6 32 ............................C CGGAGCCCGAGGACAACGGATTGGAAAAAAGA 1593753 29 100.0 32 ............................. ACCCGATTTACCCCGCACAAGACGTTGAACGT 1593692 29 100.0 32 ............................. TATGTTGACGTTCGGGCGAGAGCCACATATAA 1593631 29 100.0 32 ............................. ACGTGCCCACCCTGGGCAACTGGCTGCGAGCC 1593570 29 96.6 32 ............................G CCTCCCCCAGTCGCCGGCACCGATGCCGCCAA 1593509 29 96.6 32 ............................C ATCGGAAGCGCTCACACGCACATCGACCCTTG 1593448 29 96.6 32 ............................C TTGTCCCTGTCATCCCTGTCGGCTTTCGGGCA 1593387 29 96.6 32 ............................C CCAGATGGGAATCAACAATGCTTATGCACAGG 1593326 29 100.0 32 ............................. TCGCCTTCATGGAACCCGGTTCGGATCAGAAT 1593265 29 100.0 32 ............................. GGATTTTGTAGGCATCGGAAAGATAGTGATCA 1593204 29 96.6 32 ............................C CATCATGAATCCATCGGTGTTGGCGTAGATGA 1593143 29 96.6 32 ............................C TTCCGACAAAACCGCATGGATACACGTCAAAC 1593082 29 100.0 32 ............................. AAAAGTTGGACATATTATTTCAAAAAAGTTAT 1593021 29 96.6 32 ............................A TTCAATCATATCAGCCACCCATAAGCCCAACA 1592960 29 96.6 32 ............................C GGCATCGCCACCAGCGCGCAGAATATGAAAAC 1592899 29 100.0 32 ............................. TTTGAAAAATACGGATTGGCCTGGCTGACGGC 1592838 29 100.0 32 ............................. GCTGAAACTGGCGTGCTCATTGAGTTTTTTGG 1592777 29 96.6 32 ............................A GTGTCCTTTAGCCTGTCATGGTTGCGCAATTT 1592716 29 100.0 32 ............................. TCGCCACGAATCACACGGTCGGCCAGCTCCGA 1592655 29 96.6 32 ............................C CGGTCCCATAGATAGACCAAAGGCTCTCACCA 1592594 29 100.0 32 ............................. TCCCTCTCTATGTTGACACTGTTAACATTCTA 1592533 29 96.6 32 ............................C CTGGTATTGTATAGTCGATTCGTTTGCGTAAG 1592472 29 96.6 32 ............................C CGTATCTATCCGGGTGAACGGGTATGCACTAA 1592411 29 96.6 32 ............................C AGGAATATTTGGGTGACGAAATCTACGGAACC 1592350 29 96.6 32 ............................C AATGTGACCTCGTTGCTCAGGAATCTCAGATT 1592289 29 96.6 32 ............................C ATTTTCATCAGGCTCATCCTGAGTAGACACTG 1592228 29 96.6 32 ............................C AAGCTCTCTCTCCATATGTCATGAAACCCACT 1592167 29 96.6 32 ............................C GTGAGCTTGGTGCCGTCCTTGAGCTTGGGTTT 1592106 29 100.0 32 ............................. AACCCCGCCATTCCCATAGGAAGGCGGGGAGC 1592045 29 100.0 32 ............................. CAGCTTTCCTGGCATAATCCTCTTGCTGAATT 1591984 29 96.6 32 ............................C TCATTGCGCAAGGCCGGAAAGTTCAGCATATT 1591923 29 100.0 32 ............................. CTGCGCTGCCTCATCGACTACAAGCTCGGGGT 1591862 29 100.0 32 ............................. GACCTTGCAGAACGGAAGCTCTCTGATAATCC 1591801 29 96.6 32 ............................C ATATTTTCAAGGGACTGCCGCACGTTCCCCTT 1591740 29 96.6 32 ............................C CTGTGAAGCAAGGGTAGGGGCTGAATTTTTGA 1591679 29 100.0 32 ............................. ACGCCAAGAATCCAGGAGGATCATGAATTCGC 1591618 29 96.6 32 ............................G TCATCGCTATGCTACAAGCCGTCGTCGAATGA 1591557 29 100.0 32 ............................. TCGATGTGAAACTTGGAAGATGTTTTGTTGAA 1591496 29 96.6 32 ............................C TTCGGCACCATCGGGGCGCTCGTGGTCACCCC 1591435 29 96.6 32 ............................C ACTGACATGCATCTATATCATAATCACGGAGA 1591374 29 96.6 32 ............................C AACAAGGCCGTGCTGGACCGGCAGACCGCCAC 1591313 29 96.6 32 ............................C CGCGGAGGTGCATCGTGGCGCTCAACCAGAAC 1591252 29 96.6 32 ............................C TGCTTCATGACAAGGCGACCATATGGAACGAA 1591191 29 96.6 32 ............................C CAAAGGATCATCGATATCAGCGGTCAGGATAT 1591130 29 96.6 32 ............................C AGCCCCATCACCGGAAACACCAACAACAAGTA 1591069 29 100.0 32 ............................. GCACGGAGAGGTAGGTGTGCGATGGCCGAGGA 1591008 29 96.6 32 ............................C CGTGTATGCCCATCCTATCGGCCATCCGTATC 1590947 29 96.6 32 ............................G CCTGGAACTGTCCGAACGCATCGGAGGCAAAG 1590886 29 96.6 32 ............................C GACGTTTGGATACGGGAAAACGCGCCGGTTCT 1590825 29 96.6 32 ............................C ATATTTTCAAGAGACTGCCGCACGTTCCCCTT 1590764 29 96.6 32 ............................C AACCAGCAAAAAGGGCCGCAGTCGCTTGCCGA 1590703 29 100.0 32 ............................. TCGCCTATGTTCCGCATGGCTGCCGGTGAGAT 1590642 29 96.6 32 ............................C AACGGTATCCGCAGCTGATCTATACCATCAAA 1590581 29 96.6 32 ............................C TAATGTCAAACGATTGCCGAATGCGCCGAGAG 1590520 29 100.0 32 ............................. CTGCGCTGCCTCATCGACTACTAGCTCGGGGT 1590459 29 100.0 32 ............................. TCCGGGCCGCCGATGACGTTGCTCAGCTCCTG 1590398 29 96.6 32 ............................C CAGGATGATACCAGCGATCAGCCCGATCCGCA 1590337 29 100.0 32 ............................. GACGACGGATGGACTTTTCGGCCGCTTCCTTG 1590276 29 96.6 32 ............................A CTGCAAATTTTGTTGATTTGACAGATTTGTTG 1590215 29 100.0 32 ............................. TACGGCCAGCAGTTGCACACGTCCAAGGTGGA 1590154 29 96.6 32 ............................C TTCGCCACCATCGGGGCGCTCGTGGTCACCCC 1590093 29 96.6 32 ............................C CGGTCATGTCCTTTCCCTGGACAGCAAACAAC 1590032 29 100.0 32 ............................. TGGAGGGCGTTCATGTCAGGTGCGTGACCGTG 1589971 29 96.6 32 ............................A CCCTCACGGCCAGCCGACTGCCTTTTCCGCAG 1589910 29 100.0 32 ............................. CGGTATCGCCACGAATTCCTTGATACCGTTGT 1589849 29 96.6 32 ............................A ATGTCACCGCAGAAGAGCTGGTGCACTGGTTT 1589788 29 100.0 32 ............................. CCATGCGCATCCAAGCAACGCATCAATTCAGT 1589727 29 96.6 32 ............................C AAGGTAGTGGAATTCAGGGACTCGCTCAAGCT 1589666 29 100.0 32 ............................. CGTATTCCGCTCTGAGGACCGTCGCCAACATC 1589605 29 96.6 32 ............................G CCAAAGACGAAGAGGATGCGCCTGCCGAGGTT 1589544 29 100.0 32 ............................. CTCGTTGCGCAACGCCTGCCCGTCGTCAGTGT 1589483 29 89.7 32 ................T..........TC GCAGTATCCGAACGCATCGTTGGACCCCTCGT 1589422 29 93.1 32 ................T...........C CTTTGCCCTGGACGATCAGCTTTTGACAGTAC 1589361 29 96.6 32 ............................G TCGTTTATCCGGTCGTCGTCACTCATACCCTC 1589300 29 96.6 32 ............................C GCACCCCGACTGCATCGTCAGCGTCAGCTGGG 1589239 29 96.6 32 ............................C TATGCAGTTCGTGTCTTGCTGGTAGTCTGCTG 1589178 29 100.0 32 ............................. GTCAAGGCTGTGGCTGATGGTATGGATATCAG 1589117 29 96.6 32 ............................G GCGTCCGGAGCCAGCTTTTCGATCACCAAGAT 1589056 29 100.0 32 ............................. TACTTCGCCTGGGATATGGCGTATGTGTACGA 1588995 29 96.6 31 ............................A TGGACTATCTCGCCATCATCGCCGGTGCCCC T [1588969] 1588934 29 100.0 32 ............................. TATTTTCAACCTGTGCGGCCAGGGTCGGGGCG 1588873 29 96.6 32 ............................C GGTAAGACCGCAAGCAACATTAAAAGGATTAT 1588812 29 96.6 32 ............................G GCCGGCCAGAAGGTATCGGTGTTCAAAACCAC 1588751 29 96.6 32 ............................C AAAGACTACCAGCGGGAGATGGCCGCCATCAG 1588690 29 100.0 32 ............................. TGGATCCCTTGATGGCCATGCCATTGAGAAAG 1588629 29 100.0 32 ............................. GCTCCTTTCAACTCAATTGAGTTGGTATCTTT 1588568 29 96.6 32 ............................G GTCTTCGGGCAGACTGCGCAGAGCACCAGCGC 1588507 29 96.6 32 ............................C GAATGGTGTCCAAGGAGGCGGCCGTGGGTGCC 1588446 29 96.6 32 ............................C GGGAGCAGCGTGACAAAGTCCTTGCCAGACCT 1588385 29 96.6 32 ............................G CGGCGGCGAAAGGCCATGGTGCCACCGAGTAA 1588324 29 100.0 32 ............................. GACCCGACAAAACGTACTACGCTGCCGATAAT 1588263 29 96.6 32 ............................A CCACTTGTTCGGTGTGGCCTGCGCAAGTGACC 1588202 29 100.0 32 ............................. TTATTTTATAGACAGTCTGAACGGTTTCGGAA 1588141 29 96.6 32 ............................A GGCTGGCTATACTTTTGACCAGATAGCACTTA 1588080 29 96.6 32 ............................C GCGATCACATCGTCAAGCCTACAACAAGGTAA 1588019 29 100.0 32 ............................. ATCAAGACCACTAACAGCCTTTAAAGCCTTTC 1587958 29 100.0 32 ............................. TCGCACCGACATTGCTTTCCGTGTTCCACTGT 1587897 29 100.0 32 ............................. GCCAGGCCTGCCACCATGGGCGAAGGTCACAT 1587836 29 100.0 32 ............................. TCTATCATATCAGCCACCCATAAGCCCAGCAA 1587775 29 96.6 32 ............................C ACGTCCATGATCGCATTGTTTCCTGTGATATA 1587714 29 96.6 32 ............................C GCGAGTCTGTATGGCATGTACGTTATAGGAAA 1587653 29 100.0 32 ............................. ACTGCTTGGTCTTTTGGTCATAAAAAAGGATG 1587592 29 100.0 32 ............................. TCTCCCCTAGCTTCAACAGTTTCTCCAGATGG 1587531 29 100.0 32 ............................. GCATACAACGGAGCGGACAACGCGCAGATAAC 1587470 29 96.6 32 ............................C AAACTGGTGGATTATCTCAACGATATGTCCAA 1587409 29 100.0 32 ............................. CCACGGTTGTAGACCTTTCTGCCATGCCTCAA 1587348 29 96.6 32 ............................C TTCTCCGACCCGATCACGCTTGGCATGATGCA 1587287 29 96.6 32 ............................C GTGTCACGTTCGCATTGACGTAATCCACTGAT 1587226 29 96.6 32 ............................C TCGATATACGATGTCAGGTCCTTCCATAGGCG 1587165 29 96.6 32 ..............T.............. CACAATGAGACCATCCTGACTCTGCAAGTCGT 1587104 29 100.0 32 ............................. AATTCATCACCCGCTGCTGTTCCCTGCGCGCC 1587043 29 100.0 32 ............................. GGTATTCAGCATGTTTTTTGACTCTACGGCTG 1586982 29 96.6 32 ............................C TACAAAAAGCAGCCGATGACGATGCTCACCTG 1586921 29 96.6 32 ............................C TGCATGTAGATCATGGGCTTGATGTCGTAGAC 1586860 29 96.6 32 ........T.................... CCTGCCCGTACAGGGCGGACTTGGCAAACTGC 1586799 29 100.0 32 ............................. CGATCCTGGCGCTCAGATGCGCCATGCCCGAC 1586738 29 100.0 32 ............................. TCACACGTCGAATGGTATACAGGCAATGGACA 1586677 29 100.0 32 ............................. GCTTTGGAGGCGACATTCTGGACGATGCCGGA 1586616 29 96.6 32 ............................C TTGACGATCCGCAGCCTGGGGGTCATGTCCGG 1586555 29 100.0 32 ............................. CCTCACGTTGCATGAGGCACAACGTCTGAAAA 1586494 29 96.6 32 ...................C......... CCGGCAGTCAGCGGCAGGCTCGGCCGGCGGCA 1586433 29 100.0 32 ............................. TCGGTCATCGGCAGCGTACGGCTCGAAGACCT 1586372 29 96.6 32 ............................G TCCAGCGAGCTCAAAGGCATCTGGGACAAGGC 1586311 29 93.1 32 .............G..............G GAGGCCAGGGTGACCCGGGTCCCGGCACTGAT 1586250 29 96.6 32 ............................C GGTCGAGAAGAAGCGGGTGCAGCTGTGGAAGA 1586189 29 93.1 33 ..............T.............C GACCCCAAGGAGGCCCTGACGGTGGACGGTGAC 1586127 29 100.0 32 ............................. GCTCGTTGGATGCATACCGATACATGGCATCT 1586066 29 89.7 32 .....T........T.............C CGTGCAGAGCTAGCTACAGCCATGTCAGTGAG 1586005 29 96.6 32 ..............T.............. GGTTTCCGGTTTGTCGTCTTTGCCTTTAGGTT 1585944 29 93.1 31 ..........T........T......... GGATCAGGGATAGGGTTCAAGAAGGAGCCAA T [1585918] 1585883 29 89.7 0 ......T......T...........C... | ========== ====== ====== ====== ============================= ================================= ================== 147 29 97.7 32 GTGTTCCCCGCATCCGCGGGGATGATCCT # Left flank : GCCACATCACCGCTAGGGTTCGGGACCGGCTCTGGGAACGCATCACAGGGCAGATCCGAACCGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGAGTTTCAAAGTGCATCGCTCAGATTGGAACCCGGTAGACTGTGAAGGATTGACTCTTATGGAGAGGCCTACGGATGGCGGCGATGGCAGATCTGCGGGTGGTAGAAACCGATACCGCCGGACTGGTTGGAGCAATGCCAGCAAGTACAGACGTGCGGCGAGGTTCCGGCGCTCGCAATCCGGCTGAGCCCAAGCGGGTCTGCACTTTTCAGATGAGTTTTGCCGATGAGTGCCGAGTACTGATTATTAAGCCAGTGCATTGATAAGGAGTTTGGTGTATATGGTCTGAATTGTAATGGCTGAGACGGGGAATAGAGGGGGGCTCGAAATGCAAACTCATTAAAAATCAGAAATCTTGGTTATTGTATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : AAAGGACATCTAATGGATGCCTTCAGGTTCACCATTATGAGAGGAGACGACCAGAAAATGCATAAGGCTTTAATAAGCGAAATGGCATCCAGGGATTGTGCCTGCACCCGTCATGACAGCATTCCTGAGGATCTGATTGACGGCTATCCGCCGAGACACGCATAATCGAGAAAATGGGTGAAACTAAGCTCCTGGTCTGGAATTCGCTGGATGATGTGGACAAGAGAATGATCCAATCGGATTGCGTATACTACGGTACAGGCTGCGGCGGCGAAACAGAGGTGGGTTTCTACGACGTTATCCGCATAATGCGATTCGACTGGTTCATTCACGTGCTCCCACATGCTGTTTCAATCAGCAAAAGAATCGCTATAGGAGCGTGGCGGAGAATCCATAACAACATTATGGTTTGAACATGAGTATGATTTAAACCCGAGCGTTTGATTCTCTGGGGATGATCCAGCCGTCTATTCGATTAAGAACGAGAATACCGCGTGCTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //