Array 1 66453-63854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000011.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66452 30 100.0 36 .............................. ATGTTTAAGTCAGATGGCTCACCAAATCAAATGTTT 66386 30 100.0 36 .............................. TTTATTGTAGCTGTTATAACTTCTTTATTTGTATTA 66320 30 100.0 36 .............................. TGATTTATTAGAGGAAAATAGAGAATTAAATATTAA 66254 30 100.0 36 .............................. TATTGCTCTAAATTTAGTAGACCAAGTTCAATTTCT 66188 30 100.0 36 .............................. TTAAATGCTTTATAAAGTATTAATTCATTTTGTAAC 66122 30 100.0 36 .............................. TATTAATCCTTCTATTGGAAAATATCGTCTTCAAGA 66056 30 100.0 36 .............................. TATAGTTTTGTAGCTCTTTCAAGTTCATCTGCATTT 65990 30 100.0 36 .............................. ATATATCTAAATGGATTATTATATCTAACTCCATCT 65924 30 100.0 35 .............................. ATTTTATAATGGTAAAAAAGAGTTTTACATAGCTG 65859 30 100.0 36 .............................. TTTTGAAGTTTAGTTATATCTGGGTCACCAGTCTGT 65793 30 100.0 35 .............................. CAGCATCTAAACCTTCTCTTCTTGCTTCCTCTGAA 65728 30 100.0 36 .............................. TTAAAATTCAATTTAGTAAATGAAGTTAATTCTGGA 65662 30 100.0 36 .............................. TTTTCTTTTGCAGCACTTCCTAGAACATCTCCATCA 65596 30 100.0 34 .............................. TCAAATCTAACTGATGTTCTTTTATTATCAAAAG 65532 30 100.0 36 .............................. TCTTTAGCTTTTTCTATTTCAGCAATTATCTCTACT 65466 30 100.0 36 .............................. GGATTATCCAATCTTTAATCTTATTACCATACCATT 65400 30 100.0 36 .............................. TATCTCTTAAAGCACTATCTAATTCAACAATAGTTG 65334 30 100.0 36 .............................. TATTGAACTTAGCATCTAATTTAGTATTTTTAGTAG 65268 30 100.0 37 .............................. TAGAATAAAAATTACTTGCAGAATAAAAAATGTCTTC 65201 30 100.0 36 .............................. TAGAAAAAAGTGTACATTGACAACTGAATATCCCCT 65135 30 100.0 36 .............................. ACACTTATTTTGATTTTATTTATTTTAATTTTTTAT 65069 30 100.0 36 .............................. TCCATCTACTTTTTTACTTTTAGCTTTTTCTTTAGT 65003 30 100.0 36 .............................. AGTCTGAAGATGAGCGAATGTGCTATATCTGTAATA 64937 30 100.0 37 .............................. TTAAATATAATAAATCGTAATGTACAAAAATAACTTA 64870 30 100.0 36 .............................. TTTCTTGAGTTAATTGAACCCCCATTTTTAAGCTCC 64804 30 100.0 36 .............................. TTTTCTTCTAGCTCTTTTTTCTTAGCCATTTTACCA 64738 30 100.0 36 .............................. ATGTTTATACATGAGTTTAGTGATAGGTTCTTGGTC 64672 30 100.0 36 .............................. AAGGCAAGTGATTTGCTATTTAGAATAGGTGTAAAC 64606 30 100.0 35 .............................. ATTTCTTTTTGTGAAGTGTTAAGAGATTGCTCTTC 64541 30 100.0 36 .............................. ACAGTAGCTATTCCAATTTCTTCTGCTTGTGGCATA 64475 30 100.0 36 .............................. TCAAAGATGCCCCTCTAGCTGGTTTTTGGGTATCTA 64409 30 100.0 36 .............................. TGTGTTGAGTCGTGATATTGACTTTTTCGGAAACGG 64343 30 100.0 35 .............................. TTGTAGTCCTTCCATTTCCATCACACAAAAAGCAT 64278 30 100.0 35 .............................. TCTATGTTATGTACATGATTACCTTGTTTGAGTAG 64213 30 100.0 36 .............................. TAAGAGTCTCTTTGTATATCAATTTCTCTAGTAGAT 64147 30 100.0 36 .............................. TAAATTATTAGTTTTAAAATTTAAAGGGGGAAAAAA 64081 30 100.0 36 .............................. GCTAACTTAATTACTTGTTCCACATTTGCTAATACC 64015 30 100.0 36 .............................. AAATATTCAATATAGTTTTTAAATACACTTTCCATT 63949 30 100.0 36 .............................. TCATTAGTACTTGTTATTCCAGTAAAAGCTACTTTG 63883 30 93.3 0 ...............A........C..... | ========== ====== ====== ====== ============================== ===================================== ================== 40 30 99.8 36 GTTAAACAGTAACATGAGATGTATTTAAAT # Left flank : CAGATTTAAAAGAGTATACAATCTTTTTAAATACTATAGTTAAAGATGAATCTGGAAATATGATTGTAGGAAGTGATGTATGGTATGAATATATATCACTACTAAAAAATGATAATGTTGAGTATTCTGAAAAGAGGGTGAAAATGTCTGAAATTATGGAAAAACTAGATTATTTTACGTATAAAGTTCAGAAATTTGATAATTCATTTAATGATTTAGTTGGAGATATTTTTTATATTGATGATGGAAGTAAGTATTTTACAGAGGGAAAGTTTGATAGAAGTAAATTTAATCAAAATGAATTTCTATAATGTATTTAGATTATATAGAGAATATTTATCCCAAGTTAATTAATTAGAATTAGTTTAAAGCTATTGAAATATAGATATTTTATATCTTATATATATTTTCTAGGATTAGCTGGGATAAAAAATCTGTATATTAGTGTTTTCAGTGTATTTAAGGGAATTATATTTTTAAGAAGTACTGATTTTAAAGTG # Right flank : TACTCTATCATAAAATTTTAATATATTAAACAAACTAATATGTGATATACTTATGTATAAATAACAAAATAAATAGGTGATGTTATGAAAATTACAGGAACTTTGATAAATTACTATTTCCATTGTAAAAGACAATGCTGGTTGCTTGGTAATAGAATAAATTTGGAAGAAAATAGTGAAGATGTAAAAATAGGTAGACTTCTTCATGAACTAAAAGAAGAAAAATCAAAATATAAAGAAATTGCAATTGAAAATATAAAAATAGACAAATTAACAAGAGAATATTTAGTAGAGGTTAAAAAGTCTGATGCTGATATAGAAGCTGTTAAGTGGCAAGTTCTTTTATATTTAAAAAAGTTAAAAGAAAAGGGAATTGTAAGAAAAGGGAAAATTGAATTTATAGAAAAAAATAAAACTAATAAAAAAATAGTCTTTGTAGATTTGAGTGAAGTATCTGAAGAACAGCTTATATCTATAGAAAGAGAAATTGTTAATTTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 190586-191212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000002.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 190586 29 100.0 38 ............................. CTCAAAATTAAATAGTTGGCTATGGTTAAGGGATTGCC 190653 29 100.0 38 ............................. ATAATAGCAGATATGATGTTTAATAACGGAAGTATAAG 190720 29 100.0 38 ............................. CTGAATGAACCTAAGGTAGTTGAACAGATTGAAAAGAC 190787 29 100.0 38 ............................. TATGTCAGGACTTCTTAAACCATATTCAGCATACACTC 190854 29 100.0 37 ............................. AAATTTAATATTGCTGGAAAAGGAGAAATGGATATTG 190920 29 100.0 37 ............................. AATGCTGAACTTAAAGTAATGATGCTATTTTGGGACA 190986 29 96.6 37 ............T................ AAATTTGCAAGGCTAAATTGCCCCTTAATTAATGGTG 191052 29 100.0 37 ............................. AGTTTTTCTATATATTCAGATATTTCACTTTTATCTT 191118 29 100.0 37 ............................. GAAATATGTATAGAAGCATTGAAACAAGATAAATATT 191184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 38 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AGTTCATACAAACAAAGGATTATCCTCCCCATTTTAAGAAGGGAGGTGATTATGTATGGATAATTTTTTACTTAGTATATTAGCCAGTATTCTGGCTAGCTATATAGTTTACTTAATAAGTAAGTTATTTAGAAAACGTAAAAAACCACTCAAAGCTGGCACTAAGAGTGGTTGGGAACTTGATTTTAAAATAAAGTTCCATAAATTCAAATAACATCGTTTATGATGAACTCCACTCTACTGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATATTTATAATATAATAAAATTATAGAAGTTTTGCAGTGAGCGAAATTTGTGATAAAATATGGCTTAACAATTGGAATATAATGCATTGAAGATGTGTGATAAGTATTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGGAAATACTCAATTTGTTTTGGG # Right flank : GTTTATATTCCTCACACATATAATACAATTAATTCAGTTTTAATTGTCATTATGCTCAATATTTAGTTTTTCTGTATCTTATAAACCAAGAATATAATTGATAGAGACACCAAAAATTTTAGCAAATATTATTAACTCATCATCTCTTATTGGTCTTTCATCAGACTCTATTATATTCATAACACTTGTATTTATATTTGTTTTTTCAAACAATTATTTTTGTGACCTATTCATATTTTCCCTAATATATTTAATCACTTGACTTATGTTCATACATGATCACCTCGAAAAATTTCTATTGTAGAGTTGTAAAAAATTTAGCTTTAAAATATAGAATATCAAGTGATTTTAAGTAAGAATTGTAACAATTAAATAAGTATAAGACAAGTTTATGAGTTCATATTTTATAACAAGGGGTGATGTTATGAAAATACTACAACAATTTAAACCATACAAATATGATAAAGAAAAAAATATAGAATATGATGAAAAAATTATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 45903-46876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000001.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 45903 29 100.0 37 ............................. TTAAGCTTAAAGATTATGGTTTTCAAGTTTTAGTTAA 45969 29 100.0 36 ............................. TTAAGAAATGCAGATAATAGGATACCTTTCAACTGG 46034 29 100.0 38 ............................. TGGAAACTAATATTTATATAAAACTTGTAAATATACAG 46101 29 100.0 35 ............................. CGAGAAATTGAGCTAATTTTACTATTATCAGCATT 46165 29 100.0 36 ............................. AAAGGTGTGAAAAGAGATGAGTTAAATCAAAGTGAA 46230 29 100.0 36 ............................. GAAACGAAGCTAGTTATTGTGATTATACAAGTTTCC 46295 29 100.0 36 ............................. TTAATAGCACATCTTCGCTTTCAAGTTTCTCTATCA 46360 29 100.0 37 ............................. TATATATTGGATGTCAATGTCAAGAATACAAAATTTA 46426 29 100.0 37 ............................. ATAGGAAAATAGAGATAGGTTCACAATCTAATGATAG 46492 29 100.0 38 ............................. ATTTTTTCTTTTAGTTTTTTAGGAACTGGTAATCCACA 46559 29 100.0 36 ............................. TTCTGAATCATATGAAAACAAAATCTTATTTGTATT 46624 29 96.6 35 ...........................G. GAAATTATTAATGTTATTTCTACTCTTGCAGTTGC 46688 29 93.1 46 .......................A....G CATAGTCTATTGAACATTTATTAAGAGATAACTTTCGTTTTATATA 46763 29 79.3 55 ...........G...TA.T.A..T..... GTTTCACTATTGGACAACGGAAGTTTTTTCAGTGAGTAAAGATTGAATCACTTTA 46847 29 72.4 0 TA.....C....T..T...A...A...T. | A [46866] ========== ====== ====== ====== ============================= ======================================================= ================== 15 29 96.1 38 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GACAGTCAGTTTTTTGTTTATCTGAATAATATTTTACTTAAATTATTAGAGGTCTTTTTGTACATTTCTTCTAAAACATAAGAATATATATTCATAGTTAGTTTTAAATCTGTATGACAAAATCTTTCAGAAACTATTTTCATATTAGTTCCTACCAAATGTAACAAACTAGCACCTGTATATCTTAAATTATGTATTTTCATTTGTCATTAGGTATTTTTAATACATTATATAACTATGATTTTATTATTTGAAATCTAAGTTATAAATACTATTGATGATAGAGTAATTGTATACAAAAATATATAATATATTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAAATATGTTTAAGCATTGAAATGTAAGGTATTGATAGTGATTGATAAACATTATCATTTGCACTACTGTTCGCTCACTGCAAATTTAAGAGAATTGCATATGTGTGAGTATTGGAAATTCTACGTTTATTTTAGG # Right flank : TATTATCTTATTTCTATTTGTAACTTTTTTAAGTATGTATTGTCCAGTTGTAATTTGTTTTTATTATTTTAAACTTTCAATTCCAAAATTATCTAATATAATTGAATTAACTTACTTTCTTTTTTTATTTTACCTCCTTGTTCTCTAATTAATTTATACATTTTATTTATATTTAAGAATACATACTCTAATTTGATTACATAAAATAAAATGTTTTTCTACTATAAATTAAACTCTTTAAAAAATATGACTCAACTACTTTAATTTTTATTCTAATGATACATTAATTCTAGACATAATAAAACTCTCCTAGCTAGATGATTTTACATGTTTTAACTATCTCCTAAAAAAGTATAGTTTGATAAAAAGAGCATTTTTATATAAGCACCATACTTTTATTGTGGAAGATAATTATTTTATGAGGTATTGAAAACTTACATAAAATCTGTGGATAAAAACTCATACTTTCATTTTACTGACATACATCTAAACATAATAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 93665-96596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000001.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 93665 29 100.0 38 ............................. TAGACTGATATTCATCCATACTGATGATTCCTAAAGAA 93732 29 100.0 35 ............................. AGGGTTGAGTTCTGGCGTATTAAGAGGTGAGGAGC 93796 29 100.0 37 ............................. TGGAGAAGGTCTTGGATTAGCACCAATAGGTCATAGA 93862 29 100.0 36 ............................. AGTGAAAGCAAGGCTATTCCTAATTCTTGGAGTGGA 93927 29 100.0 38 ............................. AAATAAGTTTTGAAGCAGAATTTACACACAATAAACTA 93994 29 100.0 37 ............................. AAATAAAAGAATTAGGATTTACTCAACAATCAATTAA 94060 29 100.0 37 ............................. ACCAATTTTTGTATGCTATATCACAATCTTTACTCTC 94126 29 100.0 37 ............................. TCTTCCACTTTAGGTTTATATGCTGACCTATACTTTG 94192 29 100.0 37 ............................. CTGCATTATCTACAAGTGGGTGGTTTTTTAAATTAGT 94258 29 100.0 36 ............................. AAGAAAGACAAACATGTTCAAAGTCATGTTCAAACA 94323 29 100.0 37 ............................. CGGCAAATAAGAGCAGTATATTCATCAGATTTAAATA 94389 29 100.0 37 ............................. GAGGTTGATGCTTATAGATTAAGTAAATTAGCTACTG 94455 29 100.0 37 ............................. GTTAGTGTATGTCCTGGTACTAACGCTACCTTCATTA 94521 29 100.0 37 ............................. TCATTATAACCCCAACCAACTACAGTTGCAGGGATTT 94587 29 100.0 39 ............................. TATAGCTAAATCTATTGTGGATTTAATTATTTCTGCCTC 94655 29 100.0 37 ............................. AACTCTTTTGCTATTCGTTTCACTACATTATTATCAT 94721 29 100.0 37 ............................. AAAAGTAATGAGAGTTTAGAAGATAGAAGGTTTAGGA 94787 29 100.0 38 ............................. TTATTTTCTCTGATAATTCTACTAAGGTATTATTTAAA 94854 29 100.0 35 ............................. ATATGACAGCACAAGGAACACCTACAGCACAAGCA 94918 29 100.0 36 ............................. AAAAACTAAAACAGTCTATGGCTATATGAAAATCTC 94983 29 100.0 37 ............................. AAGAAAATAAGACGTTCAAATCAAAAAAGACGAAGTA 95049 29 100.0 37 ............................. TCTATTCCAACATAAAGATACAAAGTAGTTTCTTTTT 95115 29 100.0 38 ............................. AAACAAATCATCACACAAGCAATTATTATGCTTACTAA 95182 29 100.0 36 ............................. GTCGTAAAACTTAAAGATGAAACAAAAGGAATGATT 95247 29 100.0 37 ............................. AGATTCGACGGAGAACTTTTATCTAATAAAGAAAAAC 95313 29 100.0 37 ............................. ATCACCTGGTGATATACCCCTCTATCATCTCCTGCTA 95379 29 100.0 37 ............................. TGGTTTGTTGCAACATATGTGTTCCTTCAACATATCC 95445 29 100.0 38 ............................. GAATCTGGAGCAGGTTTATAAGTTTCTGGATAGCTAGA 95512 29 100.0 36 ............................. AAAAAATATAAAAGAGCTAAGCACATGAAGGATAAT 95577 29 100.0 38 ............................. TATGTTAAATTTGTTGATGAATTATATCCCAATTTTTA 95644 29 100.0 36 ............................. CACCTCTCACTACTATAGAATCTTTATCAACGCTAA 95709 29 100.0 37 ............................. GGAAGTATAATTTTTACTTTATCTCCATACTCAAAAA 95775 29 100.0 37 ............................. TGTATTGAGGGGTCGAAAATAAGTGTGTTCAAACTTA 95841 29 100.0 37 ............................. TTTGTAAATGTAACAGTTTTATCTAACATTTTACCGC 95907 29 100.0 36 ............................. GTATTTAGATATTGCAAGTAAATTACCTTCGGTATC 95972 29 100.0 38 ............................. TTTCATCTAATACCTCCTTGTTTTATCAAGAGGGTTAA 96039 29 100.0 36 ............................. ATTAATTCAGAACTTGCACAGTTGTATATAGAACTT 96104 29 100.0 38 ............................. ATATTCATATACTACATATTCTTTTCCTTCATCATTAA 96171 29 100.0 37 ............................. AGGTCTAAAATTTGTATTTAGACATACTAAGTTATTT 96237 29 100.0 37 ............................. TCACAAAAACAAGGAATACTTAAGTTAGCATCAATGA 96303 29 100.0 37 ............................. TAGAGTATTGTTCTACAATTATATTTCCAACTGAACT 96369 29 100.0 37 ............................. TGAAGTTTTCTTTTAAATTATCATCCTGTATAGCCTT 96435 29 100.0 37 ............................. ATACAGGAACAGGAGTCGGAACAGAAAAAAACGCCTC 96501 29 96.6 37 A............................ GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 96567 29 82.8 0 .C.............A......AT.T... | G [96588] ========== ====== ====== ====== ============================= ======================================= ================== 45 29 99.5 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : GAAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAACGATTAATAATCTATAAAAATGGAAAAAACATCCAATATCCTACAAAAATAGATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCTGATTTAAAAGATACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAACGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 74462-73313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000020.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 74461 29 100.0 36 ............................. CTTGTAGATAATGCAGAAGAAGAAGAAAAACAGATT 74396 29 100.0 37 ............................. GATGCTACCTTATTTTTATCTAATCCCCAAATAAACT 74330 29 100.0 37 ............................. TTATTTCTTAACCAGTCAAATAATCTATTTTGTCCTG 74264 29 100.0 36 ............................. ATCATAGTTTATTAACACAGGAAACGAGGTTAGTTC 74199 29 100.0 37 ............................. AACTCTTTTAAAAAAGAATATACGATTTTCAGAGAAG 74133 29 100.0 37 ............................. TATTAATTGCTTATCTATTAATTCTTTTAATTTTTCA 74067 29 100.0 36 ............................. TGAAGGGTTATAAAAAAAATAATAGCGAAAAGGGCG 74002 29 100.0 37 ............................. CACGAAAAAATCAGAAGGGGAGGGGGGTTATTTAAAA 73936 29 100.0 37 ............................. TTAAAACTTGAATTATTTCAAAAAGCTAAACATCAAG 73870 29 100.0 37 ............................. TTTAATTGCCCTTCATAGAATATTATTTCACCTTCTT 73804 29 100.0 37 ............................. TATGAGAAAGTTGAATTTAAAGGCGAAATGAACATGG 73738 29 100.0 37 ............................. TCTTTATATTGATATCCAAGAATAAGCGCACGTTCTT 73672 29 100.0 38 ............................. TTGCTTAGCGCAATAACTTTTGAAAATACTACAGGAGT 73605 29 100.0 37 ............................. TAAGATGTCCAAATGCTAAGAGAGAATTCTTAGGATA 73539 29 100.0 37 ............................. AAAAGAAGTTTTGAAAGTAAATGTGTAAATAATAATA 73473 29 100.0 38 ............................. GAAGTCAACAATTTGGCTATTGGTTAAGTACAACTAGC 73406 29 100.0 36 ............................. AAAGAAAATTGGGTTTTTGATTAAGAACTTGCGAAT 73341 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATCTAAGTGACATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGCACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTCATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATCAGTATTGATAATATTAAAGTATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTTAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAATTAAGAAATATTTAATCCAACTACAATATAAATTAGAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 19393-21514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADBH010000009.1 Clostridioides difficile strain 078LVP015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 19393 29 100.0 39 ............................. CAATATATTCTAGCAGGAGCAGATTTAGGAGCTTTACAA 19461 29 100.0 35 ............................. ATTCTTTATACAGAGAAACACGATACTATTTACAG 19525 29 100.0 36 ............................. ATATCTTTGTACTCTTGATTTTCCAGCTTTGATATA 19590 29 100.0 36 ............................. AATTGCATAATATTAGAGAGTTTAATACCATCAAGT 19655 29 100.0 37 ............................. GATGGTAAAATGGGAGATACTTTCTTTGGATTAACAG 19721 29 100.0 34 ............................. TTGCTTATACTTACAACTTTTTCTGCTGTAGCAT 19784 29 100.0 36 ............................. AAAACTGTTTCTACTTTTTTAGTCCCAAGTAATTCC 19849 29 100.0 37 ............................. CGCATTTTTGCTTTTATATTGCTTCTTCTATCTTCTA 19915 29 100.0 38 ............................. TCTAAAATATCCTCACAACTCCTGTAATTGTATTTTCT 19982 29 100.0 37 ............................. TGGTTTACTAAGAAAATAACGGATTTTTAAGAGAAAA 20048 29 100.0 37 ............................. TTTGATGAAAAAGAAGAATATAAGAGGGATGTGGCAA 20114 29 100.0 36 ............................. TAACTCCAAACTCCGTAAGTCTTGCCATTTCTCCAA 20179 29 100.0 36 ............................. GAGTATCAAGAGACCAGGGAAAGGCAGGTAAAGCAG 20244 29 100.0 36 ............................. AATGGTAAAATGAAGGCATAATAAATTTCAATATAG 20309 29 100.0 39 ............................. AGAGACAGTTTAAAACTAAATCAGAAGAAAAGTCTTATA 20377 29 100.0 37 ............................. TTTAAAGCACCCTTAAAATCTGGTTGGGCATGTTCTC 20443 29 100.0 37 ............................. TTGGTAGACAACCTGGTACTTGGCTTAAGATTGATAA 20509 29 100.0 36 ............................. CATGTGATAGAGATAATATACAATATGATAGAGAAA 20574 29 100.0 35 ............................. GCATAAAATACCTTCAAAAATAGCTTCTACTGACA 20638 29 100.0 37 ............................. CGAAATAATGTTTTGTTTTCGATGGGTATATATACGG 20704 29 100.0 35 ............................. TAGCTTTTGCGACTGGAAGATACGCAGATAATTTA 20768 29 100.0 36 ............................. ATTGTAAGCTCTTTAATTTCTAAATTAGCTCCGATT 20833 29 100.0 36 ............................. TTAAGTAGAGCAATGTATCATGGTTATGTGAAAAGT 20898 29 100.0 36 ............................. CTAGTAAATTTTGCTAAAAGGCACTATTATTGTAGT 20963 29 100.0 36 ............................. CAGTTGACACAATGAGTAAAAGCGAAGCAGAGCAAG 21028 29 96.6 37 A............................ TTATGTTATAGGAGCAGGTTGCAAGAAGTATAAGCAA 21094 29 100.0 37 ............................. CATAGATTTTGGAGATTTAAGGGAAGGCAATATGTGT 21160 29 100.0 36 ............................. GGGTTTGCATCTTTATTAGATAATTTTATTAATAGA 21225 29 100.0 36 ............................. TAAATATAGAATAAAGCATTTTAGTTTACAATGCAA 21290 29 100.0 37 ............................. ACCTAAAAAATCAATGCAGCTTATCTTATATGCAATG 21356 29 100.0 36 ............................. ATTAAGGAATAGTAATTACAGTGGACTGGAGTTAGT 21421 29 100.0 36 ............................. ACGTTTCGCAAGGGATTTTTTAAAGCGAATGGATAA 21486 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.4 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGCTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGACATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGTTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAACATGATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAGAAAGCACAATCAAAGCACATGGCTTTATAAGTAAAGAATACTGGCAAAATAACCATAATGCTGTTAAAAATGAGTATATACCTATATCAGATACATTTGTATATGATATTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGTTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTGAAAAATATAAAAGTCTAAGTTTAGCAGTATACAAAGATAATAAAAAAGCAGTTATTTTTTATAATAAAAAAGGTTTTAATGTAGTAAAAGGGCAATTAAATGAAGACTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //