Array 1 12449-12135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQKE01000020.1 Stenoxybacter acetivorans DSM 19021 Q384DRAFT_scaffold00016.16_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 12448 36 100.0 33 .................................... CTGGTTCCATAATGCGGTGAAACAAATGTTATT 12379 36 100.0 34 .................................... GTGTTGTTGCAGCGGACATGAGTTTAGTCAATCC 12309 36 100.0 33 .................................... AACAGCAAGCGGCGAGCAGTCAGAAAGCGAAGC 12240 36 100.0 34 .................................... GTATCAAGGAAACGCAAGAAAAATACCCTGATTT 12170 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 100.0 34 GTCTTAATCCCTTTGAAATCAGGGGGTTTGAATCCC # Left flank : GATGAAAATGCGTACAACGCAGCGGAAAAAATATATAACGAAAAGCAAGATGATAAAAGTTATAACAAAATGCTTATTGCGAAACGTGATTTATTGAACAGGCAAAGTGATGTCAATAATCCTAATCCGCAGGAAAATAAATTTAAACGCGGTGTTGCCGGTGGATACAATAACGCCAAATCTGATTTGGTCGTTGCTAACTTTGAGAAACTAATTCCGAAGAAAAAGCTGGAAGAAATTGCTAAGCCATTGTACCAATTATTGCACCATAAGTTAGATATTGACTTAAACAGCGGAAGAATTACACAAACTGAATATGATGCTTTTAAAGCAAATCCTTTGTATGTGCCATTGACCGGTGATAATAAAGAAAGTGATATTGATGATGTTATTGTTCAAGGACAAACAAAAATCAACCAAAGCAGAGATAAGGCGTTAAAAGGTCGTACCGGTTCAATGGCAGAAGATGCTATTGATGCGATTATGGCAAGCCTTGCTAA # Right flank : CCAGCCCTTTACAAAAAATACTCCAGTAAATCAAATAGATTTTTGTTTATTTGTGTAAATAAAAATCTTATCAAAAACTTACTTTCCTAAGTTTTGTTAAAGGCAGTTTCAGTGCTTGTTGTCATTATTGGCAATGCCAACCGATTAAACCGCAAGCGATATTTGTTATTTTCTCACGCTTTGTTATTGCTGTCATACCGTTTTTTTCAGGCAGCCTGAAACACGGTTTATGCCACCACAAAAAACGGCGTTTCCCATGGTTTCGCCAGCCCCAAATAGTGAGCAGGATAATGTTCTCCGAGGCTGAGCAGCAATAAGGCATCATTGTCTGCCAGTAAATCGTTTAATTTTTGTTCCAATAGCTGCCGTTCCGCCAAAGTCAGCCGACACAAATACGCCGACTTTTGTTTGCCGATGGCATAGGCTTGTAACATTTGGGCAACGCTGCGGCGGGCACGGCTGTTGCCGATGTCGTAGCAAATCAAGTAATCAGTGCGTTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTTGAAATCAGGGGGTTTGAATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 10497-11125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQKE01000037.1 Stenoxybacter acetivorans DSM 19021 Q384DRAFT_scaffold00033.33_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10497 32 100.0 34 ................................ ATATTCTTTTGACTTAATAAACATTGACGGATTA 10563 32 100.0 34 ................................ AACATCTTGGGGGTTAAACTGTGGTTGATTTGGA 10629 32 100.0 35 ................................ AAAATCGGCGCACACTCAGCCTCATGCTCTTGATA 10696 32 100.0 34 ................................ TCTGCATCTGATGCGGAAAATTCAGTAATATCGA 10762 32 100.0 33 ................................ GCTCAACTCACATGCTCGGCATTTATAACGTGT 10827 32 100.0 35 ................................ AATTAAATCATCGACGTCACGTACGTGTGCATCAA 10894 32 100.0 34 ................................ TTTGCAAATGAGTAACTTGTTTTTTTCTGTGTAT 10960 32 100.0 36 ................................ AACTCAACGCGATGCAGCTGTTCTAGAGCAGTGTAT 11028 32 100.0 34 ................................ TGCTCAATGACTACGCCGCAAATTTTTGCATTTG 11094 32 87.5 0 ......T..T..A..............A.... | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 98.8 34 GTCGCCCGCCTTGCGCGGGCGTGGATTGAAAC # Left flank : TCAGGCGGTCTGAAAGGAATCACAAATATGATGATGTTAATTACTTATGATATTTCATCAACAGATTCAGATGGCCAAAAACGCCTCCGCCGCATTGCTAAGCACTGCTTAGACTATGGCTTGCGTGTACAATTTTCTGTGTTTGAATGTGAAGTAAGCCCCGATCAATGGGTAGTGTTGAAAGATAAATTATTAAGTGAATACAACTCGGAAACAGATAGCTTACGGTTCTACCAATTGGGCAGCAAATGGCAAGGCAAAGTGGAACACCATGGGGCAAAAGCGGGATTTGACATGTTTCGCGATTTGCTTATAATATAAGCATCGCTAACCCATTGTAGTCGCCAGATTAGCGGCAGGTTAGCGAAGTAATAAACTCCTTTTATTTCAAATAGCTTGCCAATTTTTGTGTCACTGAATTGGTATTGTCCCTCGAAATTCAAGACATCAGCGAAAACCCTTTCGCCAAGTCTTGACAGTAAAGCCGTCGCAAGGCGGCA # Right flank : CAAGATGATGTATTGCCTTGTACCGCCACATATATCAATATCTACCATGATAGATGAGCAAGTACTCGTGTTTGGTGGAGCAAGAGGAGGATATTCGTGTGGTGTTAATAGAGGGTTCATGCACGAATCCGCAGACGATACCGGATCGATGGCAAGATTTTGATATTGAGTATGTTACCTGTGATAATGTACCTTATATAGACGGAAGATGGATAGAGCAGACGTTGCTACCTAAATTCGGTATAGTCGTGATTAATCAAACCCATGATAATGGAGACCCTAAAGATGTCTATATGTGGCTTATTTAATTTATGAGTGGAGTACGGATTGATTTGACGTTTGATTTACTGGAGTTTTTGGCATGCCCAACGGAGAATTAACTCATGGAAATATGTAATAAATTTTAGTTTTGTGCTGTATGTAATCAGAGCACTGTTACGTAAGCAGGTATTGTTGGCAATAGAGATTTTAAATCAATACTTTCGCCCTGAATACATTAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCGCCTTGCGCGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.60,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 29364-28188 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN050773.1 Stenoxybacter acetivorans DSM 19021 Q384DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29363 28 100.0 33 ............................ GATCGGTTAATTCTTCATTCTGATTGCCGTAAT 29302 28 100.0 33 ............................ GCCGTGCCGCTTTCCAGCTCGCTGAACTGCAAT 29241 28 100.0 32 ............................ CAGACGACAATACAGGGTGGCTTTCCGGCTCT 29181 28 100.0 32 ............................ AGATCGCCAGCCATATTCAGTACTGTTGAGCA 29121 28 100.0 34 ............................ GGACACCGCATCGGGTGATTTTCAGCTGCTTGAT 29059 28 100.0 32 ............................ ACCCCGTGTAGCAACGGGCGGCAAGATTTTAA 28999 28 100.0 33 ............................ TTGTTTGACGAATTGACAAAAATATCGCCGAAA 28938 28 100.0 32 ............................ TATTAAAGTGCTTTTAATTGCTTTTTAAAAAC 28878 28 100.0 32 ............................ GCCAACCAACAACAAAACGCCCAAGAACAACA 28818 28 100.0 32 ............................ AGACAGACTTGTCTCAATGGCAGCCGAACAAC 28758 28 100.0 32 ............................ TGCGATTTCCAAATAATTAAATTCAGCTGGGG 28698 28 100.0 32 ............................ AAATCATCACTTGAGTTTTTTTCACAAAAGGA 28638 28 100.0 32 ............................ TAGTTCAATAGAATCGGTTAAACATACCAGCT 28578 28 100.0 32 ............................ TCATATCCGTTATTATTTTCAGTGATTTCAGT 28518 28 100.0 33 ............................ CATGGCGGCGGTTACGTATGCCGATGCCGTCTC 28457 28 100.0 32 ............................ AGCAACGGCAACACAATAAAAATAAATAACGG 28397 28 100.0 32 ............................ TGATATGCAGCAAGCCGGAAGTTCTACAAAGT 28337 28 100.0 32 ............................ CATACACTGCTATAGAACAGCTGCATCGCGTT 28277 28 100.0 32 ............................ AATCGCTCATCAGCAACTAAGCGGTCATATGC 28217 28 78.6 0 A...........T..C....T..TT... | GT [28198] ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGGAGAAACGTATCGCGCATACAGGTTAAAAGCAGTGCCGATCGACTATTACGGCGCTCGGTGCGTAAAGGGTGGATAACGGAGGAGGAAGCGCAACAACGCGTTCTGAATCACCAAAACCAGAGTTGCAAACTGCCTTTTATTCAGATGAAAAGCTTGTCTTCAAAGCAGGCGTTTCGGCTATTTATCCAGCACGGGGAACCACAGCAATCACCCTCCTGCGGACAATTCAGCAGCTACGGCTTGAGTGCAGAAGCAACCATCCCCTGGTTTTAGTTCAGTAAATCGGGTGGGAGTCCACTCGGTTTTTCTTTGACAAATTTAGCTTTATAGCCAGCCCTACTGACAAATACTGTTGCGCTCCGAGCTGACCCTTTTTTTAGGTGTTTTTTTAATTATATGATTTTTATATAAAATATTTTAGTACTCTAAAAAAGGGTTTTTAGGCTGAAAGGTTGATTAAGTTATTGTTATCAGTGTATTGTATTTTTTTACTCCT # Right flank : TATCCGCAGCCCCCCAGTACAGCTCCAAAAATTCAGGCAGCCTTTAGGCTGCCTGAAAACAGGTTAAACCCAATAAATCAATGAATTAACGTTTATCCACAGGAATATAATCACGGCGTTCTGAACCGGTGTATAGCTGACGCGGGCGACCGATTTTTTGGTGCGGATCGGCGATCATTTCGTGCCAATGAGATACCCAGCCTACAGTACGTGCCAAGGCAAAAATCACTGTGAACATGGATACAGGGATTTTTAACGCGCTTAGAACGATACCTGAATAGAAATCTACATTCGGATACAGTTTGCGCTCAATGAAATAGGGATCGTTCAGGGCGATTTTTTCTAATTCCATTGCCAATTTGAATTTGGGGTCGTTATGCAAACCCAGTTCGTTTAATACCTCATCACAGGTTTGTTTCATGATTTTGGCGCGCGGGTCCATGTTTTTGTAAACGCGGTGACCAAAACCCATTAAGCGGTATTTGCGCTCTTTTACACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43860-44248 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN050773.1 Stenoxybacter acetivorans DSM 19021 Q384DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43860 28 100.0 32 ............................ ATCGCGTTACTTTATTAAATAATACATGCACT 43920 28 100.0 33 ............................ TATGAACTAGCATATAAAGAAATGTCTCAAATT 43981 28 100.0 32 ............................ CAGCATCACGCAAAGGCGCAATGATGTTTTTT 44041 28 100.0 32 ............................ TCTAATTCGGTTTTTTCTTCTGCGCTTAACTC 44101 28 100.0 32 ............................ GCGTGTCTGACCTGCGTCAATCAGGTCATAGT 44161 28 100.0 32 ............................ GGCTTGGATTGTTTTTGAGGTGTTTGCCATGA 44221 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAATAAAATACCTTCTCCATACGGAATCAATGGTTGCTGGGGATATGTAACGAATGTCTACGTAAGACCAGCTTATCGGAATAATGGGGTTGGTAAGAAATTATTGAATTTTGTTAAAGACCAGGCAGTTGCGAATAAGTGCGAGTTGTTGGTTGTATGGCCCAGTGACAGGAGTTATCCATTTTATAAACGAGCAGGATTTAAATCTGAAGAAAGGGAACAAGACCCTTTGGTTCTGGTGCTTTGACCCCAGAATCAGATTACATGATTGGACTTCGAACCTCTCTTAGTGTGGGATGTTGTCCGCTTGCCAGGCATCTCTTGTCAGATTCTGATTGACAGGGGACTAATTCCCGTATCAGTGAAACAGTAACATCACAGCCATAATTCACGCTTCGTTTTTTGCTCCCAAGGAGACTGTAATTTAAATTGTGTAATTGCCTGTTTTTGATATAGCTATACTATTATTTTTCAGAGAGAAAAATAATAGTATAGCTATG # Right flank : AACAAAAAGCAGCCCTAAGGCTGCTTGGTTAAAGTTTACTACCGTACAGGCGCGGAAGATATTGGTTTTCCATGCGTCATCAATGAATCACATAACCGCGCAAATAGTTAATGCGTTGGTTGGTTAATTGTGTTTCACAATTCAATTGTGCCAATTCTGCTTCACTGCCGGATTTTGCTTGTGCGGCGGCACGGCATTGCTTTTCTTTCTGGGCAACCCATTGCTCTTGATCACCAGTCAGCTCGTTGCGAATGCTTCCGTCCATATCCCGCCACAAACGATTAATTTCGGCTGTCGCATTGCGGCTATTGCTTTGTGCCTGCAATAAATCATCGGCAGATACTGTTGCAACAGCATTGGGCGGCAATACCGCACCACCGTTTAGAATGGCACTGGCCATTTGTGCATCAGCATTGGCACTGGCTTCAGATGCACTTACCGGTATTTCCGGAATTGATTGCAAGTTATTGACATTCTTCAGCGCATCGGCACGGTTAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //