Array 1 910937-909601 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079098.1 Methylococcus capsulatus strain IO1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 910936 37 100.0 36 ..................................... ATCGAGTCGCGCCTCATCCTGGGGACGGGGCATACC 910863 37 100.0 36 ..................................... TCCCGGAAGACCTTCCAGGCGGCGACGTCCATCACG 910790 37 100.0 34 ..................................... ATGATCACGGCCAGCACCGCGGCCATGCCCAGCG 910719 37 100.0 36 ..................................... TCGCCAGGATGTGGTCCATCAGCGCCGGCCCAGGTC 910646 37 100.0 34 ..................................... TCCTGGTCGTCGATGGCCTTGAGCGCGGCCGCCG 910575 37 100.0 35 ..................................... CTTCAGAAGCAATGTCGGGAGTGGTGCTCATAACA 910503 37 100.0 36 ..................................... ACCGGATCGACCCAGCCGCGGCCGGCGAAGATCCAC 910430 37 100.0 36 ..................................... GCGCGGGCGCTGGAGATCGCCGACTCGGCCATGAGG 910357 37 100.0 34 ..................................... GGCACCGACGCCGGCGAGGCCACCGGCTACTGGA 910286 37 100.0 36 ..................................... AAGAAATGCCGCCGTGACGCCATGGGTTGCAGGACC 910213 37 100.0 34 ..................................... AAGGCGGAAATACGGCGCGCGCTGCCGAGCCATC 910142 37 100.0 36 ..................................... GCGCCGACGCGCGAACAGGCCCTGCTCGATGCCGCC 910069 37 100.0 34 ..................................... GACCGCATGGCGCGCTGGGCAATGGCCGCCATTC 909998 37 100.0 36 ..................................... CTTGATTTTGGCGGCATTGCCGCTTTTGCGAGCGGC 909925 37 100.0 34 ..................................... CCCCTAACTACATCATGAGGGTATCAGTATGAGC 909854 37 100.0 34 ..................................... TTGGACGCCCCGGGACGAGCGCCTGGGGTCCCCC 909783 37 100.0 35 ..................................... AGCAGCAGCTCGTAGGGGATGTTCAGACCGGCGGA 909711 37 100.0 35 ..................................... CTGCACTGCAGAGACCTGCGACCACACACCCCGCA 909639 37 94.6 0 .........................C...G....... | TC [909611] ========== ====== ====== ====== ===================================== ==================================== ================== 19 37 99.7 35 GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Left flank : TGACTCTGTTCAGCGATCGGCTGGGTTTGACTGGCAAGGCCGACATCATGGAGTTTCTGCCGGACGGCACGCCGCGCCCGGTGGAATACAAGCACGGCCCGCGACGGCAGCGCGAGCACGATGACGTTCAGGTGGCGGCTCAGGCGCTGTGTCTGGAGGAAATGACAGGCAAGGAGGTGCCGGAAGGGGTGATCTACCATCACGGCTCGCGAAGGCGGCGCGTGGTGCCGATCACACCGGAGTTGCGGATAAAGACCGAAAGGCTCATCCACGAAGTACGCGCCCTGTTGGCTTCTGGGAAACTGCCGCCGCCGGCGAGTGAGCCGGAACGCTGCCGGGGCTGTTCCATGATCGAAATCTGCCAGCCGGAGATGCTCAAATCCGCCGCCGAGATCGACCGGCTCGCGCAAACCCTGTTCGAACCGGAAGAGGACCTTCCATGACCGTGCTGCAAAACACCCTCTACGTCACCACGCCCGAGGCTTATCTACGCCTGGAGG # Right flank : ACGGATACGCTTGCGAAACAGGAGGAAATGAATGATGCGGAATGCGGCTAGGGTCATTCCCGTGATTCTGATCTCGGCAGTCGCCCTGCACGGCTGCGCGATCGGATACCAATTCAACTACGCCGAAGCCGAGCCTACCATTCGGACGAACCCCAAGATCGTGGTGGCGGTCGGCTTCCAAAATCGACGCCCTGCGATCGTGAGCCAAAAGAAGCCTCCCGATTACGTGGGGGTTCTTCGGTCCTCGCTCGGCATCCCCTACAGTGTAACCACGGAGTCGGAGAGACCGATGGCGGATGACATGGCGACCGCCGTGGCGGGAGCGATCGAGCGGGACGGAGGCAAGGCGATCGCGCTATCCATTGCGCCGACTGCGTCGATGGCGGAAATCGTCCGCGATGCCAAGGTTAGAGGCGCAGGAACGTGCATGGTATTCACCCTGCGCGACTGGCAGACGGACACCTACATGAGCACGAATCTCGTCTACGACGTGGCGGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTAAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 1191930-1187082 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079098.1 Methylococcus capsulatus strain IO1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1191929 28 100.0 33 ............................ CCTCATCGGCCATGATGGTCGCGCGCTCAGGCA 1191868 28 100.0 33 ............................ CTAGGGTCGGTGCTGATCGGCTCTGGCATGCGG 1191807 28 100.0 33 ............................ CGTTGAGGGTGGGACAAGTGGGACAGGACAGGA 1191746 28 100.0 33 ............................ TCTGCACCAGAGCCCCTGTGTCGCCGATGTCGC 1191685 28 100.0 33 ............................ TGCCACGAAATACCGGCCATCGGCCAGAAGGTC 1191624 28 100.0 33 ............................ TCATCCTCATGCCCTCCTGGCGAATCGGATTTC 1191563 28 100.0 33 ............................ CGGTCCGGAGGCGTAGATGCCGGGGATCTGGAT 1191502 28 100.0 33 ............................ GCCGTCATGCTGATGCAAGCCCCGAACATCGCC 1191441 28 100.0 33 ............................ TCGCGTTCAGTGCACCGGTGGGGGAGGAATCGG 1191380 28 100.0 33 ............................ TTCCGCCGATAGCCCCGCCGAACAAGCCTCCGA 1191319 28 100.0 33 ............................ TTTGCCGCTGCCCGCGGCGACCGCAATATTGAA 1191258 28 100.0 33 ............................ CCGATTTCACCCCGATGGAGATTTCCATCGTCG 1191197 28 100.0 33 ............................ TTGATGTTTGCTATTGCCAAAATCTTTATCAGT 1191136 28 100.0 33 ............................ CCGACCCCATCAGCGCAAGCAAAAGAACCAAGC 1191075 28 100.0 33 ............................ CCCACGGTGAAGCCGGAGACGTACCAAGGAGAA 1191014 28 100.0 33 ............................ GGTTTATGCCATCGCCCGGATGGATGGATCGGA 1190953 28 100.0 33 ............................ GCGGTAGTGGTACGGGAAGCGGTAGTGGTACGG 1190892 28 100.0 33 ............................ CCTGGTTGACAAGACCTTCGTGACAACCAAGCT 1190831 28 100.0 33 ............................ GCATGACCGGAGGTCCGCGCTTGGTGGTTACGA 1190770 28 100.0 33 ............................ CCGGTCGATGTTGGGCGTAGTCAAGACCATGTC 1190709 28 100.0 33 ............................ GATCGGCCTTTGTTCGTCCACGCTGTACCTGGG 1190648 28 100.0 33 ............................ GTTCTTCGATACGACTTGGGATTGGCTGACCGA 1190587 28 100.0 33 ............................ TTGATCAGTCGCGCTAAAAGCCGGCTAATCCAG 1190526 28 100.0 33 ............................ CTCCTTCCGCCGGCCCGGTGCCCCTACGCGCAC 1190465 28 100.0 33 ............................ GTCCGCCGTCAAGGTCAGCCACGCCTTGCCGGA 1190404 28 100.0 33 ............................ TTCCCCTCGATGTGCTGCTTGAGCCGGGGAAAT 1190343 28 100.0 33 ............................ CGACTTCTTCGCCGACGCCAGCAGGGCCGCGGC 1190282 28 100.0 33 ............................ GTCTCGGTCGGTGGTGCGGCCTCTTGTCCGTAT 1190221 28 100.0 33 ............................ TGATGATGCGCCTGCTTTCCCGTCCGTACTGTA 1190160 28 100.0 33 ............................ TGACGCGCCAGGGCGGCGGCTGGCCGACGAGGC 1190099 28 100.0 33 ............................ CGAGTCTGGCGGCCTCGGGCCTCTGGCGCTGCC 1190038 28 100.0 33 ............................ CTGGCCGCACACTCTCAAGATCGGCCTTTGTTC 1189977 28 100.0 33 ............................ GATGGAGCCGGAAATCGCCCCGGCCAAACCCGA 1189916 28 100.0 33 ............................ CAGCAAAACCAAAATCCGGCACTTTGTGACGTA 1189855 28 100.0 33 ............................ CTGACCCGGTAGAGTCCGTCATATGCCGGCGCT 1189794 28 100.0 33 ............................ TCATGACCGCACTCGGTCAACTCCTGATCGCCC 1189733 28 100.0 33 ............................ TCATGAGACCACCTTGCCGAGCTTCGGAATCGC 1189672 28 100.0 33 ............................ CCTGGCTATGAGGCGGACAAGCGGCCTGACGGC 1189611 28 100.0 33 ............................ CCCTTTGATTTATTGGTGGGCCATGTAGGGATC 1189550 28 100.0 33 ............................ CGTCCCTGGGCGGCCCGGCGTATGGGCAAGGTC 1189489 28 100.0 33 ............................ TCTGCGCGAGGCCGATCTACATGGCGCTGATTT 1189428 28 100.0 33 ............................ CGAGCGCCTCAACGCCCAGATCGAGGCCATCAA 1189367 28 100.0 33 ............................ TTTTCCTTATGGATCATAAGGGCGTGGGACAGA 1189306 28 100.0 33 ............................ TTGCAAAAAGCTCTCTCGCGGTGCCACAGAGTC 1189245 28 100.0 33 ............................ CCAGGTCCGGAACTCGGCTTCGGCGTTCGCGGC 1189184 28 100.0 33 ............................ TTGGCGTCGATGTCGGCGCCGGTGAGACCCGAT 1189123 28 100.0 33 ............................ GGATGGCCTGATCATCCCCGCGGCCGCGGCGAC 1189062 28 100.0 33 ............................ CCGGGAGATATCCCTCATCCAGGCTGTGCAGTC 1189001 28 100.0 33 ............................ CGACCAGCGGGGCCGACTGCATCATCAGGTAGC 1188940 28 100.0 33 ............................ CAGTTCAGACTGAGCCGGACCAGGGCGATCGCG 1188879 28 100.0 33 ............................ CGTGGCCAGTGCCTTGTCCTCCGCCATCACGCC 1188818 28 100.0 33 ............................ TCATCCGGAGTGCCGATGCAGCCCATGACGATG 1188757 28 100.0 33 ............................ TCAATAATTGCCCGAGTGCGGTCATGCCTAAGC 1188696 28 100.0 33 ............................ CTACTATGGTCAGGTGAAACCCGGCCTTTACCG 1188635 28 100.0 33 ............................ CGTAGTCGGGGCGGAGTTCGCCGGTGTCGCGGT 1188574 28 100.0 33 ............................ TGTCTGCATCGTGTAGCGCAGCGGAACAGGGCA 1188513 28 100.0 33 ............................ CGTAGTCGGGGCGGAGTTCGCCGGTGTCGCGGT 1188452 28 100.0 33 ............................ TGTCTGCATCGTGTAGCGCAGCGGAACAGGGCA 1188391 28 100.0 33 ............................ CCTTGGCGGGAGCACCCTTTCCCCGATCATCTC 1188330 28 100.0 33 ............................ ATAAGGAGAAAGCCGACATGGCAAAGCGTAGCA 1188269 28 100.0 33 ............................ CGTAGAGCCGGCGACCGTTCAAAGGATCAAGCG 1188208 28 100.0 33 ............................ TCGCGGCGAAGGTCTACGCCGCGCTCCTGCATG 1188147 28 100.0 33 ............................ CGTGACGAGATACGAGTTTCCGGACGTTCACAT 1188086 28 100.0 33 ............................ CACCCACGATCACCCCCAGAAAAGAGAAGGCCC 1188025 28 100.0 33 ............................ TCATGCGTGTCATCGGTGCTTCCCGCCATCAAG 1187964 28 100.0 33 ............................ TGATCATCCTGGGTATCGCCGGTCGCGCCAGGG 1187903 28 100.0 33 ............................ GCCATCCGGTGGCTGGAGACGCGCGGCCTGTGC 1187842 28 100.0 33 ............................ CACGCCGCCGGATTCCGCGGCCACCGCCTCGGC 1187781 28 100.0 33 ............................ TGTTGGGCGGTCGACCGGGACGGCGGTCGACGC 1187720 28 100.0 33 ............................ TCATGCGTGTTATCGGTGCTTCCCGCCATCAAG 1187659 28 100.0 33 ............................ GCGCCGGCACAGTTCAAACCTCTCCGATTGCCG 1187598 28 100.0 33 ............................ CTGCAAAAGAGCATCGAGAGCAGCCTGATTGCA 1187537 28 100.0 33 ............................ CGCCGGAATCCAGCACATGACCGAGCCGGAGGC 1187476 28 100.0 33 ............................ CAAACTGCCGGATCTGCCGCATCAGCAGCCGGG 1187415 28 100.0 33 ............................ TTTTGGGCATTTTGTTCAAGAGTGTTTAAAGAA 1187354 28 100.0 33 ............................ CGAGGAGAGCATCATGAGTCGCGCCAAAGCCTA 1187293 28 100.0 33 ............................ TCCCGGGCCATCTTGATGTAACTCTTGCGGATC 1187232 28 100.0 33 ............................ GCACGCCAAGCAGCAAAAGCCGACGCCCAAGCC 1187171 28 100.0 33 ............................ TGTCCGGCGCCTGGTTGGCCGGCACATTCATAT 1187110 28 100.0 0 ............................ | A [1187084] ========== ====== ====== ====== ============================ ================================= ================== 80 28 100.0 33 GGCTCCCCCGCACACGCGGGGATAGACC # Left flank : CTTGCCACTGGCTTTCAGCGTCGCTAAGCGCGTGATGGACGATCCGTCTTTGCCATTGGAGAGGGCACTGCGCAAAGAAGCCGCCCGGCAGTTTCACAAGCAAAAAGTCATTCCGAAGATGATCGACCGCATCAAGGAGTTGCTGCATGTCGATGACGGTAATGGTGACGCGTAACGTCTCTCTCCGCATGCGCGGCTTTCTGGCATCCTCGATGCTTGAATTGGCCCCCGGTGTCTATAGCGCACCGCGCCTCTCGACTGCAGTCCGCGAGCGTATCTGGGCGGTGGTTGAGGATTGGTTCACTGCCGAGCAGGATGCCTCGGTCGTAATGGTTTGGGTCGATCCCGCAATGCCTGGCGGACAGAATGTCCGGACTCTCGGGCTGCCACCGGTTAAATTCGTTGAACTTGACGGAATAGTCCTGACTCGTCGACCTTAGGGTTTAGTGGATCTTTAACAGTCCGCTTTTTTGTTTTACCTCAAAGCGTTAGCCTATAGA # Right flank : CCGGCGGTGTCAAGGGCGAAGTGCAATACCTGGTTCATTGAAGGAGCACAAGGAAGTCGAGCGAAGCGAACGAGTGCGACGTCCCCGCGAAGCCATAGGCCCGGATGTTTTGCCGGAATCCGCGGCTTCATCGCGGGTGGAGACGAAACATAAGTGATCCGACAAGGCGTCGAGTCACTGGGGGCGCCTTGGCGGAGTGCGTCGCGGAGAGACGGACGGAGCCGAGGCGGACGCAGGACGGCGCGGGCCGCCGAAGGCAAGGACGTCGCCAGTTTTTTGCTCCCGAGGGGGACGGGGATGTCCCGTCGGGTTTCGCAAAAAATGGCGACGCTCCATCTGTCTGAAAGAAGCCGATGAATACAAGAGCTTCCGGAGGAGGGACACTCCCGTCCCGACGTCTGTCGACTCAGACACGATCCCGGGTCACATGGTGAGGATGCCTCTGCCCTTAACTTGCCTCCCGCGCGTTTCGATGATCCTTTCAGCGTCGGCCGGACGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //