Array 1 517-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RXKQ01000422.1 Klebsiella pneumoniae strain 4803 contig_385_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
       516	    28	 100.0	    33	............................	CACCTGCGGGACTACTTCATGGAGCGCGTCCGC	
       455	    28	 100.0	    33	............................	CAAACGGGGGTGATCCATGATACTAAGCAAATC	
       394	    28	 100.0	    33	............................	TGCCGCGCCCTCGTGAGTTCGAGCAGATCCTGC	
       333	    28	 100.0	    33	............................	CGAGGAAATGATCGCCATTGACCGTAAGGCGAT	
       272	    28	 100.0	    33	............................	CGATGCGCAGTTTTTGGAGACGCGAAAATTCCA	
       211	    28	 100.0	    33	............................	TTTACTCGAAGGTTAAGCGGGCGTAATATCCTC	
       150	    28	 100.0	    33	............................	CGGTCAGCACTTCCAGAAAGGCGGATATTCCAC	
        89	    28	 100.0	    33	............................	TCTGGCGCTGCCGTTCCTCTTCGGGTGAGAGGG	
        28	    28	  96.4	     0	.G..........................	|                                	
==========	======	======	======	============================	=================================	==================
         9	    28	  99.6	    33	GTCTTCCCCACGCACGTGGGGGTGTTTC	                                 	       

# Left flank :   TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT
# Right flank :  C

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCACGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//


Array 1 325-53 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RXKQ01000543.1 Klebsiella pneumoniae strain 4803 contig_525_2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
       324	    28	 100.0	    33	............................	TTACCAGAAAAAAGCCCTCGGACAAAAAATATC	
       263	    28	 100.0	    33	............................	CGATCCCGGTTCCTGATGCCGTCGTTGTGCCGG	
       202	    28	 100.0	    33	............................	TAAATTCCATACCCGGTGGACTGATGCACCTCG	
       141	    28	 100.0	    33	............................	TGCAGGACGAGCAGGCAGTAAAGCGCCAGGCGG	
        80	    28	 100.0	     0	............................	|                                	
==========	======	======	======	============================	=================================	==================
         5	    28	 100.0	    33	GTCTTCCCCACATGCGTGGGGGTGTTTC	                                 	       

# Left flank :   ATGCGTGGGGGTGTTTCCGACTGGATCACGTACCTGATCAGCGTAGTGG
# Right flank :  CCGAGTTAACGCTTGAACAAGCGATTCAGCATACGTCTTCCCCACATGCGTGG

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACATGCGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-10.80,-11.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.87   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//