Array 1 988825-990378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041999.1 Streptococcus agalactiae strain GBS11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 988825 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 988891 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 988957 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 989023 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 989089 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 989155 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTAATGATGG 989221 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 989287 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 989353 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 989419 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 989485 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 989551 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 989617 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 989683 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 989749 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 989815 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 989881 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 989947 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 990013 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 990079 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 990145 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 990211 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 990277 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 990343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //