Array 1 30729-32084 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQDW01000012.1 Neisseria meningitidis strain M38774 M38774_S14_cleaned_ctg_10224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 30729 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 30795 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 30861 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 30927 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 30993 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 31059 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 31125 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 31191 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 31257 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 31323 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 31389 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31455 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 31521 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 31587 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 31653 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 31719 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 31785 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 31851 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 31917 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 31983 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 32049 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //