Array 1 251104-252174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWE010000005.1 Listeria marthii strain FSL L7-0523 NODE_5_length_437980_cov_15.722075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 251104 29 100.0 35 ............................. CAGTGACTGCTGTGTGTTGTGTGTTACACGTCCTG 251168 29 100.0 36 ............................. GATGTTAATTTTTTCATCATCACTAAGTGTCTAGCC 251233 29 100.0 37 ............................. GGAGATATAGTAGAAGCCGCAATGCAACAATGCAATG 251299 29 100.0 38 ............................. AAGCAACTTGGCGAATACATTTATGACAAGTGGAAACT 251366 29 100.0 37 ............................. ACGATACCACGCAAATCAACAGAATTTATTTGTACAC 251432 29 100.0 37 ............................. AAAATATATCTCAGAATAGCATCATTCGCATTTAAGC 251498 29 100.0 38 ............................. TTGGATGGCTTCTAATACCTCTGGAACTTCTTTTTTCT 251565 29 100.0 37 ............................. TTAACTGCCATAACTGGCTTTTTTTCTTTCGCTCTTC 251631 29 100.0 37 ............................. TTCTATTTAATTCCGAGAACTGGCGCAGGGTCTGTCC 251697 29 100.0 34 ............................. GCTGGTAGAAGAATATTATTAATAGATGGCGAAG 251760 29 100.0 34 ............................. TCGCAAGGTCCTTTCAATGTACTGTAACTTATCT 251823 29 100.0 36 ............................. ATCATTAGCGCACTTACCGGTTTGAAAGATGCGTTT 251888 29 96.6 34 ..A.......................... AAAAACATATTTAAATATCCCTACGCTTTTAAAC 251951 29 96.6 35 ...C......................... ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCAT 252015 29 96.6 36 ..............A.............. GAAGTCGAGGCAACACGTATTGCAACAGCACTAGAG 252080 29 96.6 37 ..............A.............. GATGACAATAGAGGGATTTTGATTGAAAGGTCTGGGC 252146 29 89.7 0 .......T........A......A..... | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 98.6 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAATCATCACATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATTGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGAGTAGTGTGAAAAAGGCTGGGTATCGACAGAAAGGTGAGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGTTTTTGAAAACTATGTAGAGAAGGGTGGATTTTCGTTAGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TGAGATTCCAAATTTTCCATTCCCTACACAAAAAAGCCAACCAACATGATTTAGGCTTATTTTTTATCCTCCCCGTTAACAATTCCGCAACAAAGACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACACCCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGTAAAGAAAGCAACACAATTAGTGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 267114-269282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWE010000005.1 Listeria marthii strain FSL L7-0523 NODE_5_length_437980_cov_15.722075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 267114 29 100.0 36 ............................. GAATTAAAAGGTTTTGTGGATTTGATTGTTAGATAC 267179 29 100.0 34 ............................. CTTACAGCCTTCACGTTCTAGTTCCTCCATCAGT 267242 29 100.0 35 ............................. TCTATTGTTGTTGGTGGGACATCCGTCGAATTTGC 267306 29 100.0 34 ............................. CCTAATTCTTCTGCGGCTTTTTTCACTGTTCCAT 267369 29 100.0 36 ............................. TAATCTTCGCGCGGATAAACAACGACTGATTTCCCG 267434 29 100.0 36 ............................. CCCACCTCGCTTTAATCAGTTTAAAATCGTCTGCTT 267499 29 100.0 38 ............................. AGCTAAACTAGCTTTTGGTAACAACTGGATTGATAGAG 267566 29 100.0 36 ............................. GAATGTTTGTTGACGAAAAATTTAGGAATGAATGTA 267631 29 100.0 38 ............................. AGGAGAACACGGTTCCGGCAATTAATACGTAGTGGAAA 267698 29 100.0 37 ............................. ATTAGATAAAGGTACCGTTTTTGAGTACGTTAGCGAA 267764 29 100.0 36 ............................. AACGCCTGTTTACTCATTAAGCATCTTCCTTTCTAT 267829 29 100.0 35 ............................. AATTTATCAACTACAACAAACGAAATCCATCTAGT 267893 29 100.0 35 ............................. TTGACCAGTCCATCGATATTCGTTTTACCTACTCC 267957 29 100.0 36 ............................. GCGGCAACGATGCTAATATCTCCACCAGAACTGATA 268022 29 100.0 37 ............................. TACATATTTCCCAGAATCTAAAAGAGAACGGAATGAG 268088 29 100.0 36 ............................. TACCCTTTAAGTCCTTGCCAATTGCCTTGAACATTT 268153 29 100.0 37 ............................. GACTTTGTACCAACGCTCTCTACTGTTGCATATTTGG 268219 29 89.7 29 .......................CCT... GTTAATCGCGTTATTGCGACTTAGTAATT GT [268238] 268279 29 100.0 37 ............................. TCGTCAAAAACAAAAAAAGGTTCAATTTTTCTATCTT 268345 29 100.0 36 ............................. AAAGCCAATTCTGAGATTCCGTCTTGTAGCGTTTTT 268410 29 100.0 35 ............................. CTTAGAAGCGCTAGAAAAGCAAATTAACAGCATTT 268474 29 100.0 38 ............................. ATGGAAATCGTCCATAAAACTTGGGGGACGGGCTTCTA 268541 29 100.0 36 ............................. ATACAACTAGCTGGGCTAACAGAGTTAGATTGGAAG 268606 29 100.0 35 ............................. AGCAATGTACCGCTGCTTGCCAAACCTCTAAATGC 268670 29 100.0 36 ............................. AAAGCTCTCCAAACGTTCCTTTTACGAGCAAATCAT 268735 29 100.0 35 ............................. TGGTTCTAATATAAGTGGTTGTCCCGCCCATTTAC 268799 29 100.0 35 ............................. AAGCGTCAGAATAAGATGTTGTGATGACTCTTTTT 268863 29 100.0 35 ............................. AAGTTTAGGAACTCGACTTTCTTTAGTTCCATTTC 268927 29 100.0 36 ............................. CACACTACCAAATTATTTAGCAACGATGCTGAATCT 268992 29 100.0 36 ............................. ACGATATTAAACCAGTGATACTGCTTTGCCGACGTA 269057 29 100.0 37 ............................. TATAAATTTCGACGTCACTTTCGTTCTCAACGCCTTC 269123 29 96.6 37 .........................G... TTGAAATCATAATTATTAAATTTAGAAATGCACTCTG 269189 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 269253 29 86.2 0 ...............C......CA....C | C [269275] ========== ====== ====== ====== ============================= ====================================== ================== 34 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTAGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAGTCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //