Array 1 37169-36999 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVY010000010.1 Enterococcus plantarum strain DIV0204D scaffold3.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 37168 34 100.0 35 .................................. AGAGTGGGTCAAAGGGAAATTTGTTGGAAAAGTGG 37099 34 100.0 33 .................................. TTTAGGTTTAGACGGTTTATTGCCTTTAATTAC 37032 34 76.5 0 ..................T...AA...AA..CTA | ========== ====== ====== ====== ================================== =================================== ================== 3 34 92.2 34 GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Left flank : TTTCTATACTAAATATGGGGATGGCGGAGCAGATATTTTACCGTTATTCCGTTTGAACAAACGTCAAGGCAAGGCATTGCTGAAAGAATTAAGCGCACCGGCTGAACTCTATACGAAAATCCCAACTGCTGATTTAGAAGATGATAAACCTTTAGTAGCTGATGAAGTAGCGCTTGGTGTCACTTATGATGATATCGACAACTACCTCGAAGGAAAAGCAGTATCAGAAAAAGCAAAAGAAAAGATTGAAAGTTGGTATAAAAAAACACAACATAAACGTCATATGCCAATTTCAATTTTTGACGATTTTTGGAAGTAAACATTAGGAAAAGAATGACTAATATTTTAGTGCGAACCTCAAGTGCACATAAAATCACTAAGGGACCCGCACCAAACTTTATGGGTGAAAAAGGCTATTTCTGTTTTTAATAGTTATGTAGATTTATTTGAGAAAATCAAGAATATGGAAAAAATATGGAAGATAATCCTATTTTTTCACA # Right flank : AAATGGAGTCTTTCCTTTTTTTACATCTAAAATCAAATTAACATGCCATCATTTTGTTCAAATGGTTAAAAAAAGTGTAAAATTAAACTAGTTATCTGAAATAGTGGATAAACTATTCTACAATTGTACTAACTAAAGGAATAAGAAGGTGATTGAAAAGATGAAAAAATTGTTTAGGAAAAAAAGAGAGATAGATAAAGTAGCGTTTTCTTCGTCTGAGGAAAACGCACCAAAAATCGATGATAGTGATATTCGGATACCAGCCGATATTAAAGGGCTGTCCAATCAAGAAGTACAACAACTTTATACTGAAGGTAAGACCAATAAAGAAGTGGAAGATCTATCTAGAACTACAAAACAAATTATTTTAGATAACTCGTTGACATTATTCAATTTTATTAACTTGTTTTTAGCAGTGGCAGTTTTTGCAGTCGGTTATCCTAAAAATGCGCTATTTTTTTGGATCATTATTATCAACACAGCAATTGGTGTTATTCAAG # Questionable array : NO Score: 7.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.09%AT] # Reference repeat match prediction: R [matched GTCTCACTCTAATATGGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50813-50981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVY010000003.1 Enterococcus plantarum strain DIV0204D scaffold3.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 50813 33 100.0 33 ................................. AGCACTGGTCAACAGACGTTCATTAGAAACAGC 50879 33 100.0 37 ................................. ATTATCGTTTGTTTGCTAGTGCTAACTAGTCGAGCTA 50949 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 100.0 36 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : ATAGAGATAAGTATGAGTATTTGCAGAATAGTGCAAGAATTTGAATGGTATTTTCCAACTGATGGCAAGCATTGGTAATATTTGACTGGAATAGTAAAAAATTGCATAAAATAAAAGGAAAGAAACGGATTTATTGATGGTCGGAGACTATTGGAATGGTGGGCTTGGAAAATGGATGCATTACATCGATAGCTTTGGGACATTGATTTCATTATTTTATGATTATTTGAATAGATAATTGTAGAGAAAAGAAGATAACTTTTTGAAATTAACCGTGACTTCTGTTACTAGAATACTTATAATTAGAGAGAGAGTTAAAGCGTTTTACTATATATAGTTTAAGTGCGAATAATAAGTGCACATGAAATCGCTAGGAGATCCGCACCAATTTCTTGGTAATAATGGAATGGAAAAGCGACTATTTCTCATTGAATTCACATTTTTTACTATGATTATGGTTGGAAAGTGACAGATATGTATATATTTCGTCCCTTTTCACG # Right flank : TTTTTCGATCGTAGACTGGAGTTAGTAAATTATTTTGTCTCACTCTTTATCGAGTGAGATTTTTTCTTCAATCATCTATTTACCAATCGTTAAAACAGAACGATTTATCTTTCCCGTTTATCAAAAGATACTCGTCAAATCAAAAAGAAATATTGTTCTACAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTGGTTATGGCGGGAGCAGGCAGCGGAAAGACGAGAGTTCTAACACACCGTATTGCCTATTTAATTGAAGAAAAAGATGTGAATCCATGGAATATTTTAGCAATCACATTTACTAATAAAGCCGCAAAAGAAATGAGAGAACGGGTTGGGAAATTATTAGAAATCGGTGGAAACGATGTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6163-5456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVY010000035.1 Enterococcus plantarum strain DIV0204D scaffold3.35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 6162 33 100.0 34 ................................. TTTTTGGTTATCAAAACGTTGTTTTGGGCTAAGG 6095 33 100.0 33 ................................. TATGCAAAAGTACATTGATCGAACAGCCACACG 6029 33 100.0 36 ................................. TTATGATCGTTCTACTTCTTTCAGATTTTTGTATTA 5960 33 100.0 33 ................................. CCACATTGCTCCAAATACGTTACCCCCAAACGG 5894 33 100.0 35 ................................. ATAGTAGTAAACATTATCTGTGTAAGTCGCACCAT 5826 33 100.0 35 ................................. GACGAGTAAAATAAAAATAAAATCATCTCCTGACA 5758 33 100.0 35 ................................. TAACGATTATACAGTCGGAAACATCATTGCAATGG 5690 33 100.0 34 ................................. AGCCATCCGATGATTCGCTTCATAGATTCGATCT 5623 33 93.9 33 .......................AA........ AAGAATATCTTTAAAACTACGATTAATTAAATC 5557 33 100.0 34 ................................. GTTAGCGTCAACAAATGTTTGAAATTCATCAATT 5490 32 84.8 0 ...............A.......TC-..A.... | CCA [5467] ========== ====== ====== ====== ================================= ==================================== ================== 11 33 98.1 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGAAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCACTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACTCTCATGTAGTTTGGCAAAAACGAGTATTGGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAACAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAGCTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGGTTTTAGCTAGGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGGAATATGTCATGTATTTCAACTATTTTCACG # Right flank : CTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAAGGGTTTATTTTTAAAAGATATTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGCAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 147533-148109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLVY010000005.1 Enterococcus plantarum strain DIV0204D scaffold3.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 147533 34 100.0 33 .................................. AATAATCAAACAATGCTTGTCAAAAAAGGTAAA 147600 34 100.0 34 .................................. AGCTAAAGAGAAGCATATCATATGGTTTATGAAC 147668 34 97.1 34 .................................T GCTTATTTTATTTGCAACACTTTAATGCGACCAA 147736 34 97.1 34 .................................G AAGCAAGGTAAAGAAATTACAAGAGTTACTGAGT 147804 34 97.1 33 .................................T TGACCCTATAGATAAAGTTACCGTTGCGAAAAA 147871 34 97.1 33 .................................C ACGAAATACACCCTCTTCTATTTTTATGTAAAA 147938 34 100.0 34 .................................. TTATATTTGTTTCGAGTTCGCTTGGTTGGTTACC 148006 34 100.0 33 .................................. ACACCGTTTATTACTATTAATGGAGAACCTGCA 148073 33 85.3 0 ......................ACT...-....T | AC,C,G [148095,148102,148107] ========== ====== ====== ====== ================================== ================================== ================== 9 34 97.1 34 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : TTTAGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGCTCGAAGAATGGAACTTGCCGTTTGAGAAAGGTAGCAAAAAAATGCCAAGATTATGGACAGCGTGTTCAGAATTCTGTTTTTGAGTGTGTTGTTGATGCAACGGAGTTAACTCGCTTGAAAAAAGAGTTGATTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTATAGATTAGGGAATAATTATCAAAATAAAGTAGAGCATATTGGTGCAAAAGAAAGCTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAAAATTGGTGCGAACCCCAAGTGCACATGAAATCACTGGGGGATCCGCACCAAATTTTAGGTATATTTTGTTTAAAAAAGCCGTTTTTCTCATCTGAATTTAATTTTCAAAGTATTTTTTTGTGAGAAAGTAAAAACATGTCATGTATTTTTGCTGTTTTCACG # Right flank : TCCAAAATAACAATTGCTGATTCATATTGCTCGTCTTATTTAAAAAAATTCTATACAATATAAATGGAGACAAGTAAAACGGTAGTGGAGGGAAATGAATGAATAACGTGATGGAACAATTAAGGAAATATGCATTATTACGAGGAATTGTTTATATGATTTTTGGATTGTTGATTGTGATCAATCCTAGGAGTGTGTTCCAAGTCGCTGTTTACTTTATATCAGCTTATATTGCAATCAGCGGTGTATTAAATCTTTACGATGGTGTTAAAGTCAAAAAAGCAACCGGTACCTATGGAATGAGTTTTCTAGGTGGAATCGTCTTATTAGTGATTGCAGGAATCGTGCTTGTTTTTGCGAAGGGAATCGTAAGTATTTTACCGATTTTCCTAGGTCTTATGATCGTGATTATTGGCGTGACTCGTGCGATTCAATCCGTAAACTTACGAACATATGTCAATGTTAGTTGGATGCCGATGTTGATTTATAGTGTAGTTTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //