Array 1 45919-44498 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANRW01000016.1 Neisseria meningitidis 2004090 NM2004090.contig.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45918 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 45852 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 45786 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 45720 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 45654 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 45588 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 45522 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 45456 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 45390 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 45324 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 45258 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 45192 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 45126 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 45060 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 44994 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 44928 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 44863 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 44797 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 44731 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 44665 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 44599 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 44533 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //